RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 TOMM6Q96B49 74 aa7.42□□□□□ -1.22
CDH3-208ENST00000569036 MRPL35Q9NZE8 188 aaKnown RBP7.42□□□□□ -1.22
CDH3-208ENST00000569036 FSIP2Q5CZC0 6907 aa7.42□□□□□ -1.22
CDH3-208ENST00000569036 TMEM262E9PQX1 116 aa7.41□□□□□ -1.22
CDH3-208ENST00000569036 SMKR1H3BMG3 65 aa7.41□□□□□ -1.22
CDH3-208ENST00000569036 ZNF80P51504 273 aaPredicted RBP7.41□□□□□ -1.22
CDH3-208ENST00000569036 HERVK_113P61574 105 aa7.41□□□□□ -1.22
CDH3-208ENST00000569036 LINC01620Q4KN68 170 aa7.41□□□□□ -1.22
CDH3-208ENST00000569036 Q6ZRU5 148 aa7.41□□□□□ -1.22
CDH3-208ENST00000569036 TRAV12-2A0A075B6T6 113 aa7.4□□□□□ -1.22
CDH3-208ENST00000569036 A0A0U1RQV1 116 aa7.4□□□□□ -1.22
CDH3-208ENST00000569036 GAGE7O76087 117 aa7.4□□□□□ -1.22
CDH3-208ENST00000569036 APOMO95445 188 aa7.4□□□□□ -1.22
CDH3-208ENST00000569036 GAGE12FP0CL80 117 aa7.4□□□□□ -1.22
CDH3-208ENST00000569036 GAGE12GP0CL81 117 aa7.4□□□□□ -1.22
CDH3-208ENST00000569036 GAGE12IP0CL82 117 aa7.4□□□□□ -1.22
CDH3-208ENST00000569036 HTN1P15515 57 aa7.4□□□□□ -1.22
CDH3-208ENST00000569036 UBE2D1P51668 147 aa7.4□□□□□ -1.22
CDH3-208ENST00000569036 CFAP126Q5VTH2 177 aa7.4□□□□□ -1.22
CDH3-208ENST00000569036 WFDC10BQ8IUB3 73 aa7.4□□□□□ -1.22
CDH3-208ENST00000569036 PPDPFLQ8WWR9 84 aa7.4□□□□□ -1.22
CDH3-208ENST00000569036 LINC01587Q99440 93 aa7.4□□□□□ -1.22
CDH3-208ENST00000569036 UBE2D3P61077 147 aa7.39□□□□□ -1.23
CDH3-208ENST00000569036 UBE2D2P62837 147 aa7.39□□□□□ -1.23
CDH3-208ENST00000569036 SMAGPQ0VAQ4 97 aa7.39□□□□□ -1.23
CDH3-208ENST00000569036 FOXI1Q12951 378 aa7.39□□□□□ -1.23
CDH3-208ENST00000569036 ERCC8Q13216 396 aa7.39□□□□□ -1.23
CDH3-208ENST00000569036 WFDC2Q14508 124 aa7.39□□□□□ -1.23
CDH3-208ENST00000569036 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.39□□□□□ -1.23
CDH3-208ENST00000569036 NEXN-AS1Q8NBZ9 246 aa7.39□□□□□ -1.23
CDH3-208ENST00000569036 TMEM263Q8WUH6 116 aaKnown RBP7.39□□□□□ -1.23
CDH3-208ENST00000569036 C20orf173Q96LM9 149 aa7.39□□□□□ -1.23
CDH3-208ENST00000569036 LINC01600Q96MT4 127 aa7.39□□□□□ -1.23
CDH3-208ENST00000569036 NAA38Q9BRA0 125 aaKnown RBP7.39□□□□□ -1.23
CDH3-208ENST00000569036 GTSF1LQ9H1H1 148 aa7.39□□□□□ -1.23
CDH3-208ENST00000569036 CRCT1Q9UGL9 99 aa7.39□□□□□ -1.23
CDH3-208ENST00000569036 K7ERJ3 54 aa7.38□□□□□ -1.23
CDH3-208ENST00000569036 CRYGDP07320 174 aa7.38□□□□□ -1.23
CDH3-208ENST00000569036 CRYBA4P53673 196 aa7.38□□□□□ -1.23
CDH3-208ENST00000569036 CKS1BP61024 79 aa7.38□□□□□ -1.23
CDH3-208ENST00000569036 LYPD5Q6UWN5 251 aa7.38□□□□□ -1.23
CDH3-208ENST00000569036 TEN1Q86WV5 123 aa7.38□□□□□ -1.23
CDH3-208ENST00000569036 TMEM141Q96I45 108 aa7.38□□□□□ -1.23
CDH3-208ENST00000569036 LINC00477Q96M19 166 aa7.38□□□□□ -1.23
CDH3-208ENST00000569036 DPH3P1Q9H4G8 78 aa7.38□□□□□ -1.23
CDH3-208ENST00000569036 ICOSQ9Y6W8 199 aa7.38□□□□□ -1.23
CDH3-208ENST00000569036 IGKV3D-20A0A0C4DH25 116 aa7.37□□□□□ -1.23
CDH3-208ENST00000569036 SUMO2P61956 95 aaKnown RBP7.37□□□□□ -1.23
CDH3-208ENST00000569036 ETDBQ3ZM63 59 aa7.37□□□□□ -1.23
CDH3-208ENST00000569036 SPANXN1Q5VSR9 72 aa7.37□□□□□ -1.23
CDH3-208ENST00000569036 C10orf126Q8N4M7 172 aa7.37□□□□□ -1.23
CDH3-208ENST00000569036 Q8TAT8 98 aa7.37□□□□□ -1.23
CDH3-208ENST00000569036 SCGB3A1Q96QR1 104 aa7.37□□□□□ -1.23
CDH3-208ENST00000569036 TRAV21A0A0B4J279 112 aa7.36□□□□□ -1.23
CDH3-208ENST00000569036 TIMM17AQ99595 171 aa7.36□□□□□ -1.23
CDH3-208ENST00000569036 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.35□□□□□ -1.23
CDH3-208ENST00000569036 LCE2DQ5TA82 110 aaPredicted RBP7.35□□□□□ -1.23
CDH3-208ENST00000569036 SPANXDQ9BXN6 97 aa7.35□□□□□ -1.23
CDH3-208ENST00000569036 AGPAT4-IT1Q9H0P7 198 aa7.35□□□□□ -1.23
CDH3-208ENST00000569036 C11orf86A6NJI1 115 aa7.34□□□□□ -1.23
CDH3-208ENST00000569036 DUSP14O95147 198 aaKnown RBP7.34□□□□□ -1.23
CDH3-208ENST00000569036 BAALCQ8WXS3 180 aa7.34□□□□□ -1.23
CDH3-208ENST00000569036 PRADC1Q9BSG0 188 aa7.34□□□□□ -1.23
CDH3-208ENST00000569036 Q9HAA7 133 aa7.34□□□□□ -1.23
CDH3-208ENST00000569036 ZNF815PA8K554 130 aa7.33□□□□□ -1.24
CDH3-208ENST00000569036 A8MWV9 139 aa7.33□□□□□ -1.24
CDH3-208ENST00000569036 PAX4O43316 350 aa7.33□□□□□ -1.24
CDH3-208ENST00000569036 Q6Q795 121 aa7.33□□□□□ -1.24
CDH3-208ENST00000569036 C2orf66Q6UXQ4 117 aa7.33□□□□□ -1.24
CDH3-208ENST00000569036 SCGB1D4Q6XE38 83 aa7.33□□□□□ -1.24
CDH3-208ENST00000569036 Q6ZTI0 123 aa7.33□□□□□ -1.24
CDH3-208ENST00000569036 GEMIN7Q9H840 131 aaKnown RBP7.33□□□□□ -1.24
CDH3-208ENST00000569036 TRAV8-2A0A0B4J237 113 aa7.32□□□□□ -1.24
CDH3-208ENST00000569036 LECT2O14960 151 aa7.32□□□□□ -1.24
CDH3-208ENST00000569036 TSPAN13O95857 204 aa7.32□□□□□ -1.24
CDH3-208ENST00000569036 SRSF9Q13242 221 aaKnown RBP eCLIP7.32□□□□□ -1.24
CDH3-208ENST00000569036 MRPL23Q16540 153 aaKnown RBP7.32□□□□□ -1.24
CDH3-208ENST00000569036 Q6ZUT4 128 aa7.32□□□□□ -1.24
CDH3-208ENST00000569036 SH2D6Q7Z4S9 175 aa7.32□□□□□ -1.24
CDH3-208ENST00000569036 C16orf92Q96LL3 132 aa7.32□□□□□ -1.24
CDH3-208ENST00000569036 TTTY13Q9BZ97 58 aa7.32□□□□□ -1.24
CDH3-208ENST00000569036 CDIP1Q9H305 208 aa7.32□□□□□ -1.24
CDH3-208ENST00000569036 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.31□□□□□ -1.24
CDH3-208ENST00000569036 A0A0B4J2C4 111 aa7.31□□□□□ -1.24
CDH3-208ENST00000569036 TRBV6-5A0A0K0K1A5 114 aa7.31□□□□□ -1.24
CDH3-208ENST00000569036 PRAC2D3DTV9 90 aa7.31□□□□□ -1.24
CDH3-208ENST00000569036 SPINK8P0C7L1 97 aa7.31□□□□□ -1.24
CDH3-208ENST00000569036 GATA1P15976 413 aaPredicted RBP7.31□□□□□ -1.24
CDH3-208ENST00000569036 PMVKQ15126 192 aa7.31□□□□□ -1.24
CDH3-208ENST00000569036 RHOHQ15669 191 aa7.31□□□□□ -1.24
CDH3-208ENST00000569036 SLC25A29Q8N8R3 303 aa7.31□□□□□ -1.24
CDH3-208ENST00000569036 RASL10AQ92737 203 aa7.31□□□□□ -1.24
CDH3-208ENST00000569036 C11orf21Q9P2W6 132 aa7.31□□□□□ -1.24
CDH3-208ENST00000569036 ERG28Q9UKR5 140 aa7.31□□□□□ -1.24
CDH3-208ENST00000569036 TRGV2A0A075B6R0 118 aa7.3□□□□□ -1.24
CDH3-208ENST00000569036 IBA57-AS1B1ANH7 110 aa7.3□□□□□ -1.24
CDH3-208ENST00000569036 FAM19A4Q96LR4 140 aa7.3□□□□□ -1.24
CDH3-208ENST00000569036 ODF3Q96PU9 254 aa7.3□□□□□ -1.24
CDH3-208ENST00000569036 PHLDA3Q9Y5J5 127 aa7.3□□□□□ -1.24
CDH3-208ENST00000569036 SDHAF1A6NFY7 115 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms