RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 PKHD1L1Q86WI1 4243 aa8.92□□□□□ -0.98
CLN3-235ENST00000568497 PMCHL1Q16048 86 aa8.91□□□□□ -0.98
CLN3-235ENST00000568497 TMEM18Q96B42 140 aa8.91□□□□□ -0.98
CLN3-235ENST00000568497 SPANXA1Q9NS26 97 aa8.91□□□□□ -0.98
CLN3-235ENST00000568497 C14orf177Q52M58 125 aa8.9□□□□□ -0.98
CLN3-235ENST00000568497 CD164L2Q6UWJ8 174 aa8.9□□□□□ -0.98
CLN3-235ENST00000568497 LINC00173Q6ZV60 143 aa8.9□□□□□ -0.98
CLN3-235ENST00000568497 CYSLTR1Q9Y271 337 aa8.9□□□□□ -0.98
CLN3-235ENST00000568497 CSDC2Q9Y534 153 aaKnown RBP8.9□□□□□ -0.98
CLN3-235ENST00000568497 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.9□□□□□ -0.98
CLN3-235ENST00000568497 NXT2Q9NPJ8 142 aaKnown RBP8.89□□□□□ -0.99
CLN3-235ENST00000568497 IGIPA6NJ69 53 aa8.88□□□□□ -0.99
CLN3-235ENST00000568497 MRPS36P82909 103 aaKnown RBP8.88□□□□□ -0.99
CLN3-235ENST00000568497 C18orf32Q8TCD1 76 aa8.88□□□□□ -0.99
CLN3-235ENST00000568497 GVQW2A0A096LPI5 108 aaPredicted RBP8.87□□□□□ -0.99
CLN3-235ENST00000568497 A0A0J9YXV3 536 aa8.87□□□□□ -0.99
CLN3-235ENST00000568497 C1orf196B1AJZ1 125 aa8.87□□□□□ -0.99
CLN3-235ENST00000568497 COX7A2LO14548 114 aa8.87□□□□□ -0.99
CLN3-235ENST00000568497 MT-ND6P03923 174 aa8.87□□□□□ -0.99
CLN3-235ENST00000568497 COX19Q49B96 90 aa8.87□□□□□ -0.99
CLN3-235ENST00000568497 ORMDL2Q53FV1 153 aa8.87□□□□□ -0.99
CLN3-235ENST00000568497 FA2HQ7L5A8 372 aa8.87□□□□□ -0.99
CLN3-235ENST00000568497 C9orf163Q8N9P6 203 aa8.87□□□□□ -0.99
CLN3-235ENST00000568497 TMEM141Q96I45 108 aa8.87□□□□□ -0.99
CLN3-235ENST00000568497 SMCO4Q9NRQ5 59 aa8.87□□□□□ -0.99
CLN3-235ENST00000568497 AP5S1Q9NUS5 200 aa8.87□□□□□ -0.99
CLN3-235ENST00000568497 IGLV4-69A0A075B6H9 119 aa8.86□□□□□ -0.99
CLN3-235ENST00000568497 IGHV1-58A0A0C4DH39 117 aa8.86□□□□□ -0.99
CLN3-235ENST00000568497 MALP21145 153 aa8.86□□□□□ -0.99
CLN3-235ENST00000568497 LINC00242Q5T6M2 205 aa8.86□□□□□ -0.99
CLN3-235ENST00000568497 SDIM1Q6ZPB5 146 aa8.86□□□□□ -0.99
CLN3-235ENST00000568497 PYGO1Q9Y3Y4 419 aa8.86□□□□□ -0.99
CLN3-235ENST00000568497 A0A096LNJ9 63 aa8.85□□□□□ -0.99
CLN3-235ENST00000568497 UBE2D1P51668 147 aa8.85□□□□□ -0.99
CLN3-235ENST00000568497 CFAP161Q6P656 301 aa8.85□□□□□ -0.99
CLN3-235ENST00000568497 CIRBP-AS1Q8TBR5 109 aa8.85□□□□□ -0.99
CLN3-235ENST00000568497 TOMM6Q96B49 74 aa8.85□□□□□ -0.99
CLN3-235ENST00000568497 SCGB3A1Q96QR1 104 aa8.85□□□□□ -0.99
CLN3-235ENST00000568497 IGKV2-24A0A0C4DH68 120 aa8.84□□□□□ -0.99
CLN3-235ENST00000568497 CNBPP62633 177 aaKnown RBP8.84□□□□□ -0.99
CLN3-235ENST00000568497 TEX43Q6ZNM6 134 aa8.84□□□□□ -0.99
CLN3-235ENST00000568497 Q6ZRU5 148 aa8.84□□□□□ -0.99
CLN3-235ENST00000568497 AMELXQ99217 191 aa8.84□□□□□ -0.99
CLN3-235ENST00000568497 VCX2Q9H322 139 aa8.84□□□□□ -0.99
CLN3-235ENST00000568497 IGHV3OR16-9A0A0B4J2B5 98 aa8.83□□□□□ -1
CLN3-235ENST00000568497 TRGC2P03986 189 aa8.83□□□□□ -1
CLN3-235ENST00000568497 MT1HL1P0DM35 61 aa8.83□□□□□ -1
CLN3-235ENST00000568497 RPL37AP61513 92 aaKnown RBP8.83□□□□□ -1
CLN3-235ENST00000568497 SPAG11BQ08648 103 aa8.83□□□□□ -1
CLN3-235ENST00000568497 C10orf25Q5T742 122 aa8.83□□□□□ -1
CLN3-235ENST00000568497 ORAOV1Q8WV07 137 aa8.83□□□□□ -1
CLN3-235ENST00000568497 CHAC1Q9BUX1 264 aa8.83□□□□□ -1
CLN3-235ENST00000568497 KRTAP9-2Q9BYQ4 174 aa8.83□□□□□ -1
CLN3-235ENST00000568497 IGHV3-64A0A075B6Q5 118 aa8.82□□□□□ -1
CLN3-235ENST00000568497 LINC01546A6NGU7 62 aa8.82□□□□□ -1
CLN3-235ENST00000568497 ZNF561-AS1K7EIQ3 104 aa8.82□□□□□ -1
CLN3-235ENST00000568497 HNRNPA3P51991 378 aaKnown RBP8.82□□□□□ -1
CLN3-235ENST00000568497 CARD19Q96LW7 228 aa8.82□□□□□ -1
CLN3-235ENST00000568497 A0A096LNI7 61 aa8.81□□□□□ -1
CLN3-235ENST00000568497 COLCA2A8K830 154 aa8.81□□□□□ -1
CLN3-235ENST00000568497 K7EMI3 77 aa8.81□□□□□ -1
CLN3-235ENST00000568497 G0S2P27469 103 aa8.81□□□□□ -1
CLN3-235ENST00000568497 SYCNQ0VAF6 134 aa8.81□□□□□ -1
CLN3-235ENST00000568497 Q6ZN92 141 aa8.81□□□□□ -1
CLN3-235ENST00000568497 LINC00614P0C842 121 aa8.8□□□□□ -1
CLN3-235ENST00000568497 NDUFA6P56556 154 aa8.8□□□□□ -1
CLN3-235ENST00000568497 DPH3Q96FX2 82 aa8.8□□□□□ -1
CLN3-235ENST00000568497 CAMK2N2Q96S95 79 aa8.8□□□□□ -1
CLN3-235ENST00000568497 C2orf88Q9BSF0 95 aa8.8□□□□□ -1
CLN3-235ENST00000568497 TNXBP22105 4242 aa8.8□□□□□ -1
CLN3-235ENST00000568497 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.79□□□□□ -1
CLN3-235ENST00000568497 MAJINQ3KP22 176 aa8.79□□□□□ -1
CLN3-235ENST00000568497 C2orf82Q6UX34 121 aa8.79□□□□□ -1
CLN3-235ENST00000568497 UNQ6190/PRO20217Q6UXQ8 127 aa8.79□□□□□ -1
CLN3-235ENST00000568497 ERASQ7Z444 233 aa8.79□□□□□ -1
CLN3-235ENST00000568497 FAM19A2Q8N3H0 131 aa8.79□□□□□ -1
CLN3-235ENST00000568497 TIMM17AQ99595 171 aa8.79□□□□□ -1
CLN3-235ENST00000568497 NUPR1O60356 82 aa8.78□□□□□ -1
CLN3-235ENST00000568497 GAGE2BQ13066 116 aa8.78□□□□□ -1
CLN3-235ENST00000568497 TOMM7Q9P0U1 55 aa8.78□□□□□ -1
CLN3-235ENST00000568497 CDKN2A-AS1Q9UH64 79 aa8.78□□□□□ -1
CLN3-235ENST00000568497 A0A087WYN8 130 aa8.77□□□□□ -1.01
CLN3-235ENST00000568497 A0A087WZ39 114 aa8.77□□□□□ -1.01
CLN3-235ENST00000568497 LINC00310P59036 64 aa8.77□□□□□ -1.01
CLN3-235ENST00000568497 KIAA0087Q14695 138 aa8.77□□□□□ -1.01
CLN3-235ENST00000568497 CST9LQ9H4G1 147 aa8.77□□□□□ -1.01
CLN3-235ENST00000568497 C9orf116Q5BN46 136 aaPredicted RBP8.76□□□□□ -1.01
CLN3-235ENST00000568497 SPACA4Q8TDM5 124 aa8.76□□□□□ -1.01
CLN3-235ENST00000568497 LINC01549A6NIU2 74 aa8.75□□□□□ -1.01
CLN3-235ENST00000568497 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.75□□□□□ -1.01
CLN3-235ENST00000568497 APOMO95445 188 aa8.75□□□□□ -1.01
CLN3-235ENST00000568497 HBDP02042 147 aa8.75□□□□□ -1.01
CLN3-235ENST00000568497 SPINK8P0C7L1 97 aa8.75□□□□□ -1.01
CLN3-235ENST00000568497 PDZD11Q5EBL8 140 aa8.75□□□□□ -1.01
CLN3-235ENST00000568497 BAGE3Q86Y29 109 aa8.75□□□□□ -1.01
CLN3-235ENST00000568497 LINC00469Q8N7U9 141 aa8.75□□□□□ -1.01
CLN3-235ENST00000568497 GEMIN7Q9H840 131 aaKnown RBP8.75□□□□□ -1.01
CLN3-235ENST00000568497 C6orf48Q9UBA6 75 aa8.75□□□□□ -1.01
CLN3-235ENST00000568497 KRTAP9-6A0A140TA67 174 aa8.74□□□□□ -1.01
CLN3-235ENST00000568497 NPSP0C0P6 89 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms