RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 KRTAP13-2Q52LG2 175 aa9.35□□□□□ -0.91
CLK3-223ENST00000568488 C22orf24Q9Y442 160 aa9.34□□□□□ -0.91
CLK3-223ENST00000568488 IGHV3OR16-9A0A0B4J2B5 98 aa9.33□□□□□ -0.92
CLK3-223ENST00000568488 NDUFC2-KCTD14E9PQ53 114 aa9.33□□□□□ -0.92
CLK3-223ENST00000568488 LBHQ53QV2 105 aaPredicted RBP9.32□□□□□ -0.92
CLK3-223ENST00000568488 PACRGQ96M98 296 aaPredicted RBP9.32□□□□□ -0.92
CLK3-223ENST00000568488 TRBV30A0A0K0K1B3 111 aa9.31□□□□□ -0.92
CLK3-223ENST00000568488 PDE6DO43924 150 aa9.31□□□□□ -0.92
CLK3-223ENST00000568488 LINC00242Q5T6M2 205 aa9.31□□□□□ -0.92
CLK3-223ENST00000568488 C2orf82Q6UX34 121 aa9.31□□□□□ -0.92
CLK3-223ENST00000568488 KIR2DL4Q99706 377 aa9.31□□□□□ -0.92
CLK3-223ENST00000568488 SMKR1H3BMG3 65 aa9.3□□□□□ -0.92
CLK3-223ENST00000568488 BCE1O60756 84 aa9.3□□□□□ -0.92
CLK3-223ENST00000568488 LINC00337Q8N6G1 96 aa9.3□□□□□ -0.92
CLK3-223ENST00000568488 TMEM18Q96B42 140 aa9.3□□□□□ -0.92
CLK3-223ENST00000568488 BORCS7Q96B45 105 aa9.3□□□□□ -0.92
CLK3-223ENST00000568488 K7EN84 100 aa9.29□□□□□ -0.92
CLK3-223ENST00000568488 GATCO43716 136 aaKnown RBP9.29□□□□□ -0.92
CLK3-223ENST00000568488 RAB4AP20338 218 aa9.29□□□□□ -0.92
CLK3-223ENST00000568488 KIAA0087Q14695 138 aa9.29□□□□□ -0.92
CLK3-223ENST00000568488 LINC00469Q8N7U9 141 aa9.29□□□□□ -0.92
CLK3-223ENST00000568488 OCC1Q8TAD7 63 aa9.29□□□□□ -0.92
CLK3-223ENST00000568488 TIMM21Q9BVV7 248 aa9.29□□□□□ -0.92
CLK3-223ENST00000568488 KRTAP4-1Q9BYQ7 146 aa9.29□□□□□ -0.92
CLK3-223ENST00000568488 IGKV2D-26A0A0A0MRZ7 120 aa9.28□□□□□ -0.92
CLK3-223ENST00000568488 RGS21Q2M5E4 152 aa9.28□□□□□ -0.92
CLK3-223ENST00000568488 AMN1Q8IY45 258 aa9.28□□□□□ -0.92
CLK3-223ENST00000568488 TMEM191AQ9H0A3 160 aa9.28□□□□□ -0.92
CLK3-223ENST00000568488 IFITM10A6NMD0 228 aa9.27□□□□□ -0.93
CLK3-223ENST00000568488 ASB16-AS1Q495Z4 193 aa9.27□□□□□ -0.93
CLK3-223ENST00000568488 TGIF2-C20orf24A0A0A6YYL0 155 aa9.26□□□□□ -0.93
CLK3-223ENST00000568488 A8MWL6 223 aa9.26□□□□□ -0.93
CLK3-223ENST00000568488 SMLR1H3BR10 107 aa9.26□□□□□ -0.93
CLK3-223ENST00000568488 TEX46H3BTG2 121 aa9.26□□□□□ -0.93
CLK3-223ENST00000568488 SUMO2P61956 95 aaKnown RBP9.26□□□□□ -0.93
CLK3-223ENST00000568488 RPL39P62891 51 aaKnown RBP9.26□□□□□ -0.93
CLK3-223ENST00000568488 XAGE1AQ9HD64 81 aa9.26□□□□□ -0.93
CLK3-223ENST00000568488 ZNF727A8MUV8 499 aa9.25□□□□□ -0.93
CLK3-223ENST00000568488 FAM229BQ4G0N7 80 aa9.25□□□□□ -0.93
CLK3-223ENST00000568488 MRPL55Q7Z7F7 128 aaKnown RBP9.25□□□□□ -0.93
CLK3-223ENST00000568488 HBBP68871 147 aa9.24□□□□□ -0.93
CLK3-223ENST00000568488 A0A1B0GUT8 65 aa9.23□□□□□ -0.93
CLK3-223ENST00000568488 KANTRA0A1W2PQU2 76 aa9.23□□□□□ -0.93
CLK3-223ENST00000568488 RPL37AP8A6NKH3 93 aa9.23□□□□□ -0.93
CLK3-223ENST00000568488 NRACQ8N912 160 aa9.23□□□□□ -0.93
CLK3-223ENST00000568488 FAM104AQ969W3 186 aa9.23□□□□□ -0.93
CLK3-223ENST00000568488 PPP1R17O96001 155 aa9.22□□□□□ -0.93
CLK3-223ENST00000568488 UBE2AP49459 152 aa9.22□□□□□ -0.93
CLK3-223ENST00000568488 SEC61BP60468 96 aaKnown RBP9.22□□□□□ -0.93
CLK3-223ENST00000568488 CTAG1AP78358 180 aa9.21□□□□□ -0.94
CLK3-223ENST00000568488 ZNF345Q14585 488 aa9.21□□□□□ -0.94
CLK3-223ENST00000568488 PPP1R2P9O14990 202 aa9.2□□□□□ -0.94
CLK3-223ENST00000568488 LINC00167Q96N53 147 aa9.2□□□□□ -0.94
CLK3-223ENST00000568488 SPANXA1Q9NS26 97 aa9.2□□□□□ -0.94
CLK3-223ENST00000568488 TP73-AS1Q9UF72 201 aa9.2□□□□□ -0.94
CLK3-223ENST00000568488 A0A1B0GVG6 124 aa9.19□□□□□ -0.94
CLK3-223ENST00000568488 GAGE10A6NGK3 116 aa9.19□□□□□ -0.94
CLK3-223ENST00000568488 HIGD1CA8MV81 97 aa9.19□□□□□ -0.94
CLK3-223ENST00000568488 PRSS2P07478 247 aa9.19□□□□□ -0.94
CLK3-223ENST00000568488 CKS1BP61024 79 aa9.19□□□□□ -0.94
CLK3-223ENST00000568488 MRPS36P82909 103 aaKnown RBP9.19□□□□□ -0.94
CLK3-223ENST00000568488 TOMM7Q9P0U1 55 aa9.19□□□□□ -0.94
CLK3-223ENST00000568488 KRTAP13-3Q3SY46 172 aa9.18□□□□□ -0.94
CLK3-223ENST00000568488 FAM231DQ6ZW35 169 aa9.18□□□□□ -0.94
CLK3-223ENST00000568488 FP248Q71RG6 208 aaPredicted RBP9.18□□□□□ -0.94
CLK3-223ENST00000568488 RPL32P62910 135 aaKnown RBP9.16□□□□□ -0.94
CLK3-223ENST00000568488 CT83Q5H943 113 aa9.16□□□□□ -0.94
CLK3-223ENST00000568488 C6orf226Q5I0X4 101 aa9.16□□□□□ -0.94
CLK3-223ENST00000568488 KRTAP13-1Q8IUC0 172 aa9.16□□□□□ -0.94
CLK3-223ENST00000568488 TCAPO15273 167 aa9.15□□□□□ -0.94
CLK3-223ENST00000568488 RIGQ13278 110 aa9.15□□□□□ -0.94
CLK3-223ENST00000568488 LCE2CQ5TA81 110 aa9.15□□□□□ -0.94
CLK3-223ENST00000568488 C3orf22Q8N5N4 141 aa9.15□□□□□ -0.94
CLK3-223ENST00000568488 KRTAP9-7A8MTY7 169 aa9.14□□□□□ -0.95
CLK3-223ENST00000568488 MRPL51Q4U2R6 128 aaKnown RBP9.14□□□□□ -0.95
CLK3-223ENST00000568488 SPAG11AQ6PDA7 123 aa9.14□□□□□ -0.95
CLK3-223ENST00000568488 C20orf78Q9BR46 151 aa9.14□□□□□ -0.95
CLK3-223ENST00000568488 hCG_2014768A0A024R1R8 64 aa9.13□□□□□ -0.95
CLK3-223ENST00000568488 HMSDA8MTL9 139 aa9.13□□□□□ -0.95
CLK3-223ENST00000568488 CFC1BP0CG36 223 aa9.13□□□□□ -0.95
CLK3-223ENST00000568488 IFI27P40305 119 aaPredicted RBP9.12□□□□□ -0.95
CLK3-223ENST00000568488 C4orf48Q5BLP8 95 aa9.12□□□□□ -0.95
CLK3-223ENST00000568488 Q6ZN92 141 aa9.12□□□□□ -0.95
CLK3-223ENST00000568488 LINC01561Q8N1V8 128 aa9.12□□□□□ -0.95
CLK3-223ENST00000568488 ALKBH7Q9BT30 221 aaPredicted RBP9.12□□□□□ -0.95
CLK3-223ENST00000568488 CKS2P33552 79 aa9.11□□□□□ -0.95
CLK3-223ENST00000568488 TAGLN2P37802 199 aaKnown RBP9.11□□□□□ -0.95
CLK3-223ENST00000568488 CEBPGP53567 150 aa9.11□□□□□ -0.95
CLK3-223ENST00000568488 PRLHP81277 87 aa9.11□□□□□ -0.95
CLK3-223ENST00000568488 PNRC1Q12796 327 aaPredicted RBP9.11□□□□□ -0.95
CLK3-223ENST00000568488 TNFRSF6BO95407 300 aa9.1□□□□□ -0.95
CLK3-223ENST00000568488 MT1HP80294 61 aa9.1□□□□□ -0.95
CLK3-223ENST00000568488 FAM104BQ5XKR9 115 aa9.1□□□□□ -0.95
CLK3-223ENST00000568488 SMIM2Q9BVW6 85 aa9.1□□□□□ -0.95
CLK3-223ENST00000568488 IGLV4-3A0A075B6K6 122 aa9.09□□□□□ -0.95
CLK3-223ENST00000568488 TRBV24-1A0A075B6N3 115 aa9.09□□□□□ -0.95
CLK3-223ENST00000568488 LINC00862A6NCI5 91 aa9.09□□□□□ -0.95
CLK3-223ENST00000568488 Q8IZM0 81 aa9.09□□□□□ -0.95
CLK3-223ENST00000568488 IGKV2-28A0A075B6P5 120 aa9.08□□□□□ -0.96
CLK3-223ENST00000568488 IGKV2D-28P01615 120 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms