RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	S100A2	P29034	98 aa		7	□□□□□ -1.29
CLK3-222	ENST00000568232	PCP4	P48539	62 aa		7	□□□□□ -1.29
CLK3-222	ENST00000568232	AKR1D1	P51857	326 aa		7	□□□□□ -1.29
CLK3-222	ENST00000568232	SYCN	Q0VAF6	134 aa		7	□□□□□ -1.29
CLK3-222	ENST00000568232	FABP9	Q0Z7S8	132 aa		7	□□□□□ -1.29
CLK3-222	ENST00000568232	KRTAP11-1	Q8IUC1	163 aa		7	□□□□□ -1.29
CLK3-222	ENST00000568232	LOC107984640	A0A0U1RRK4	108 aa		6.99	□□□□□ -1.29
CLK3-222	ENST00000568232	SNAI2	O43623	268 aa		6.99	□□□□□ -1.29
CLK3-222	ENST00000568232	MGP	P08493	103 aa		6.99	□□□□□ -1.29
CLK3-222	ENST00000568232	CT83	Q5H943	113 aa		6.99	□□□□□ -1.29
CLK3-222	ENST00000568232	COA6	Q5JTJ3	125 aa	Known RBP	6.99	□□□□□ -1.29
CLK3-222	ENST00000568232	SUMO4	Q6EEV6	95 aa		6.99	□□□□□ -1.29
CLK3-222	ENST00000568232	HIST1H2BK	O60814	126 aa		6.98	□□□□□ -1.29
CLK3-222	ENST00000568232	LTA	P01374	205 aa		6.98	□□□□□ -1.29
CLK3-222	ENST00000568232	HIST1H2BJ	P06899	126 aa		6.98	□□□□□ -1.29
CLK3-222	ENST00000568232	HIST1H2BO	P23527	126 aa		6.98	□□□□□ -1.29
CLK3-222	ENST00000568232	HIST1H2BB	P33778	126 aa		6.98	□□□□□ -1.29
CLK3-222	ENST00000568232	XCL1	P47992	114 aa		6.98	□□□□□ -1.29
CLK3-222	ENST00000568232	NDUFA6	P56556	154 aa		6.98	□□□□□ -1.29
CLK3-222	ENST00000568232	HIST1H2BD	P58876	126 aa		6.98	□□□□□ -1.29
CLK3-222	ENST00000568232	HIST1H2BC	P62807	126 aa		6.98	□□□□□ -1.29
CLK3-222	ENST00000568232	HIST2H2BE	Q16778	126 aa		6.98	□□□□□ -1.29
CLK3-222	ENST00000568232	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	6.98	□□□□□ -1.29
CLK3-222	ENST00000568232	HIST1H2BH	Q93079	126 aa		6.98	□□□□□ -1.29
CLK3-222	ENST00000568232	HIST1H2BN	Q99877	126 aa		6.98	□□□□□ -1.29
CLK3-222	ENST00000568232	HIST1H2BM	Q99879	126 aa		6.98	□□□□□ -1.29
CLK3-222	ENST00000568232	GNB1L	Q9BYB4	327 aa		6.98	□□□□□ -1.29
CLK3-222	ENST00000568232	TRAPPC1	Q9Y5R8	145 aa		6.98	□□□□□ -1.29
CLK3-222	ENST00000568232		A0A087WZ39	114 aa		6.97	□□□□□ -1.29
CLK3-222	ENST00000568232	IGHV1-58	A0A0C4DH39	117 aa		6.97	□□□□□ -1.29
CLK3-222	ENST00000568232		A8MWL6	223 aa		6.97	□□□□□ -1.29
CLK3-222	ENST00000568232		K7EN84	100 aa		6.97	□□□□□ -1.29
CLK3-222	ENST00000568232	TRGC1	P0CF51	173 aa		6.97	□□□□□ -1.29
CLK3-222	ENST00000568232	RPL13A	P40429	203 aa	Known RBP	6.97	□□□□□ -1.29
CLK3-222	ENST00000568232	ATP5L2	Q7Z4Y8	100 aa		6.97	□□□□□ -1.29
CLK3-222	ENST00000568232	PGLYRP4	Q96LB8	373 aa		6.97	□□□□□ -1.29
CLK3-222	ENST00000568232		V9GYV3	84 aa		6.97	□□□□□ -1.29
CLK3-222	ENST00000568232	SMIM27	A0A1W2PRY6	76 aa		6.96	□□□□□ -1.3
CLK3-222	ENST00000568232	ZNF561-AS1	K7EIQ3	104 aa		6.96	□□□□□ -1.3
CLK3-222	ENST00000568232	OR5AL1	P0C617	328 aa		6.96	□□□□□ -1.3
CLK3-222	ENST00000568232	AP1S3	Q96PC3	154 aa		6.96	□□□□□ -1.3
CLK3-222	ENST00000568232	MLST8	Q9BVC4	326 aa		6.96	□□□□□ -1.3
CLK3-222	ENST00000568232	NAT8B	Q9UHF3	227 aa		6.96	□□□□□ -1.3
CLK3-222	ENST00000568232		A0A1B0GW15	77 aa		6.95	□□□□□ -1.3
CLK3-222	ENST00000568232	XKRY2	A2RUG3	117 aa		6.95	□□□□□ -1.3
CLK3-222	ENST00000568232	CCL25	O15444	150 aa		6.95	□□□□□ -1.3
CLK3-222	ENST00000568232	CAMP	P49913	170 aa		6.95	□□□□□ -1.3
CLK3-222	ENST00000568232	AMMECR1L	Q6DCA0	310 aa		6.95	□□□□□ -1.3
CLK3-222	ENST00000568232	RNASEK	Q6P5S7	137 aa	Known RBP	6.95	□□□□□ -1.3
CLK3-222	ENST00000568232	TSKU	Q8WUA8	353 aa		6.95	□□□□□ -1.3
CLK3-222	ENST00000568232	IGLV4-69	A0A075B6H9	119 aa		6.94	□□□□□ -1.3
CLK3-222	ENST00000568232	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	6.94	□□□□□ -1.3
CLK3-222	ENST00000568232	IGKV2-29	A2NJV5	120 aa	Predicted RBP	6.94	□□□□□ -1.3
CLK3-222	ENST00000568232	FGF6	P10767	208 aa		6.94	□□□□□ -1.3
CLK3-222	ENST00000568232	RPL18A	Q02543	176 aa	Known RBP	6.94	□□□□□ -1.3
CLK3-222	ENST00000568232	TMEM18	Q96B42	140 aa		6.94	□□□□□ -1.3
CLK3-222	ENST00000568232	HSBP1L1	C9JCN9	74 aa		6.93	□□□□□ -1.3
CLK3-222	ENST00000568232	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	6.93	□□□□□ -1.3
CLK3-222	ENST00000568232	C21orf62-AS1	Q17RA5	79 aa		6.93	□□□□□ -1.3
CLK3-222	ENST00000568232	NUP35	Q8NFH5	326 aa		6.93	□□□□□ -1.3
CLK3-222	ENST00000568232	NUDT10	Q8NFP7	164 aa		6.93	□□□□□ -1.3
CLK3-222	ENST00000568232	OR5A1	Q8NGJ0	315 aa		6.93	□□□□□ -1.3
CLK3-222	ENST00000568232	NUDT11	Q96G61	164 aa		6.93	□□□□□ -1.3
CLK3-222	ENST00000568232	PACRG	Q96M98	296 aa	Predicted RBP	6.93	□□□□□ -1.3
CLK3-222	ENST00000568232	C12orf57	Q99622	126 aa		6.93	□□□□□ -1.3
CLK3-222	ENST00000568232	RETNLB	Q9BQ08	111 aa		6.93	□□□□□ -1.3
CLK3-222	ENST00000568232	RNASE7	Q9H1E1	156 aa	Known RBP	6.93	□□□□□ -1.3
CLK3-222	ENST00000568232	CDIP1	Q9H305	208 aa		6.93	□□□□□ -1.3
CLK3-222	ENST00000568232	RPP21	Q9H633	154 aa	Known RBP	6.93	□□□□□ -1.3
CLK3-222	ENST00000568232	NIT2	Q9NQR4	276 aa		6.93	□□□□□ -1.3
CLK3-222	ENST00000568232	LINC00959	A0A1B0GUT2	108 aa		6.92	□□□□□ -1.3
CLK3-222	ENST00000568232	FAM168B	A1KXE4	195 aa		6.92	□□□□□ -1.3
CLK3-222	ENST00000568232	APOM	O95445	188 aa		6.92	□□□□□ -1.3
CLK3-222	ENST00000568232	FOXA3	P55318	350 aa	Predicted RBP	6.92	□□□□□ -1.3
CLK3-222	ENST00000568232	LINC01547	P58512	204 aa	Predicted RBP	6.92	□□□□□ -1.3
CLK3-222	ENST00000568232	RPS20	P60866	119 aa	Known RBP	6.92	□□□□□ -1.3
CLK3-222	ENST00000568232	HIST3H2BB	Q8N257	126 aa		6.92	□□□□□ -1.3
CLK3-222	ENST00000568232	BORCS7	Q96B45	105 aa		6.92	□□□□□ -1.3
CLK3-222	ENST00000568232	OPRPN	Q99935	248 aa	Predicted RBP	6.92	□□□□□ -1.3
CLK3-222	ENST00000568232	C19orf71	A6NCJ1	209 aa		6.91	□□□□□ -1.3
CLK3-222	ENST00000568232	PCP4L1	A6NKN8	68 aa		6.9	□□□□□ -1.3
CLK3-222	ENST00000568232	APCS	P02743	223 aa		6.9	□□□□□ -1.3
CLK3-222	ENST00000568232	ESD	P10768	282 aa		6.9	□□□□□ -1.3
CLK3-222	ENST00000568232	NTF3	P20783	257 aa		6.9	□□□□□ -1.3
CLK3-222	ENST00000568232	CAMK2N2	Q96S95	79 aa		6.9	□□□□□ -1.3
CLK3-222	ENST00000568232	TPPP3	Q9BW30	176 aa		6.9	□□□□□ -1.3
CLK3-222	ENST00000568232	HIGD1C	A8MV81	97 aa		6.89	□□□□□ -1.31
CLK3-222	ENST00000568232	HBB	P68871	147 aa		6.89	□□□□□ -1.31
CLK3-222	ENST00000568232	RIG	Q13278	110 aa		6.89	□□□□□ -1.31
CLK3-222	ENST00000568232	FABP4	P15090	132 aa		6.88	□□□□□ -1.31
CLK3-222	ENST00000568232	RAB4A	P20338	218 aa		6.88	□□□□□ -1.31
CLK3-222	ENST00000568232	CD164L2	Q6UWJ8	174 aa		6.88	□□□□□ -1.31
CLK3-222	ENST00000568232	TMEM136	Q6ZRR5	245 aa		6.88	□□□□□ -1.31
CLK3-222	ENST00000568232	BAGE3	Q86Y29	109 aa		6.88	□□□□□ -1.31
CLK3-222	ENST00000568232	OR2D3	Q8NGH3	330 aa		6.88	□□□□□ -1.31
CLK3-222	ENST00000568232	OR10D4P	Q8NGN7	298 aa		6.88	□□□□□ -1.31
CLK3-222	ENST00000568232	HIST1H2BL	Q99880	126 aa		6.88	□□□□□ -1.31
CLK3-222	ENST00000568232		A0A087X002	238 aa		6.87	□□□□□ -1.31
CLK3-222	ENST00000568232	TPRXL	Q17RH7	258 aa		6.87	□□□□□ -1.31
CLK3-222	ENST00000568232	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	6.87	□□□□□ -1.31

Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms