RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 C2orf48Q96LS8 159 aa11.87□□□□□ -0.51
CLN3-227ENST00000567495 NXT2Q9NPJ8 142 aaKnown RBP11.87□□□□□ -0.51
CLN3-227ENST00000567495 IGLV4-69A0A075B6H9 119 aa11.86□□□□□ -0.51
CLN3-227ENST00000567495 IGKV2-24A0A0C4DH68 120 aa11.86□□□□□ -0.51
CLN3-227ENST00000567495 S100PP25815 95 aa11.86□□□□□ -0.51
CLN3-227ENST00000567495 G0S2P27469 103 aa11.86□□□□□ -0.51
CLN3-227ENST00000567495 ORMDL2Q53FV1 153 aa11.86□□□□□ -0.51
CLN3-227ENST00000567495 OPRPNQ99935 248 aaPredicted RBP11.86□□□□□ -0.51
CLN3-227ENST00000567495 CYSLTR1Q9Y271 337 aa11.86□□□□□ -0.51
CLN3-227ENST00000567495 IGHV3OR16-9A0A0B4J2B5 98 aa11.85□□□□□ -0.51
CLN3-227ENST00000567495 F8WDY8 70 aa11.85□□□□□ -0.51
CLN3-227ENST00000567495 COMMD7Q86VX2 200 aa11.85□□□□□ -0.51
CLN3-227ENST00000567495 OR10D4PQ8NGN7 298 aa11.85□□□□□ -0.51
CLN3-227ENST00000567495 C7orf33Q8WU49 177 aa11.85□□□□□ -0.51
CLN3-227ENST00000567495 TMEM141Q96I45 108 aa11.85□□□□□ -0.51
CLN3-227ENST00000567495 NPSP0C0P6 89 aa11.84□□□□□ -0.51
CLN3-227ENST00000567495 CAMK2N2Q96S95 79 aa11.84□□□□□ -0.51
CLN3-227ENST00000567495 IGLV4-3A0A075B6K6 122 aa11.83□□□□□ -0.52
CLN3-227ENST00000567495 A0A096LNI7 61 aa11.83□□□□□ -0.52
CLN3-227ENST00000567495 TGIF2-C20orf24A0A0A6YYL0 155 aa11.83□□□□□ -0.52
CLN3-227ENST00000567495 C2orf66Q6UXQ4 117 aa11.83□□□□□ -0.52
CLN3-227ENST00000567495 Q6ZN92 141 aa11.83□□□□□ -0.52
CLN3-227ENST00000567495 STPG4Q8N801 248 aa11.83□□□□□ -0.52
CLN3-227ENST00000567495 HERC1Q15751 4861 aa11.82□□□□□ -0.52
CLN3-227ENST00000567495 LOC107984640A0A0U1RRK4 108 aa11.82□□□□□ -0.52
CLN3-227ENST00000567495 OXTP01178 125 aa11.82□□□□□ -0.52
CLN3-227ENST00000567495 SPAG11BQ08648 103 aa11.82□□□□□ -0.52
CLN3-227ENST00000567495 TEX43Q6ZNM6 134 aa11.82□□□□□ -0.52
CLN3-227ENST00000567495 C2orf88Q9BSF0 95 aa11.82□□□□□ -0.52
CLN3-227ENST00000567495 GNB1LQ9BYB4 327 aa11.82□□□□□ -0.52
CLN3-227ENST00000567495 COX19Q49B96 90 aa11.81□□□□□ -0.52
CLN3-227ENST00000567495 C10orf91Q5T1B1 145 aa11.81□□□□□ -0.52
CLN3-227ENST00000567495 Q6ZRU5 148 aa11.81□□□□□ -0.52
CLN3-227ENST00000567495 RHEBQ15382 184 aa11.8□□□□□ -0.52
CLN3-227ENST00000567495 RNF151Q2KHN1 245 aa11.8□□□□□ -0.52
CLN3-227ENST00000567495 ORAOV1Q8WV07 137 aa11.8□□□□□ -0.52
CLN3-227ENST00000567495 VCX2Q9H322 139 aa11.8□□□□□ -0.52
CLN3-227ENST00000567495 CARHSP1Q9Y2V2 147 aaKnown RBP11.8□□□□□ -0.52
CLN3-227ENST00000567495 A0A087WZ39 114 aa11.79□□□□□ -0.52
CLN3-227ENST00000567495 PTTG1IPP53801 180 aa11.79□□□□□ -0.52
CLN3-227ENST00000567495 PAPPA-AS1Q5QFB9 102 aa11.79□□□□□ -0.52
CLN3-227ENST00000567495 LINC00242Q5T6M2 205 aa11.79□□□□□ -0.52
CLN3-227ENST00000567495 IGIPA6NJ69 53 aa11.77□□□□□ -0.53
CLN3-227ENST00000567495 MT-ND6P03923 174 aa11.77□□□□□ -0.53
CLN3-227ENST00000567495 UBE2D1P51668 147 aa11.77□□□□□ -0.53
CLN3-227ENST00000567495 KIAA1644Q3SXP7 199 aa11.77□□□□□ -0.53
CLN3-227ENST00000567495 LINC01561Q8N1V8 128 aa11.77□□□□□ -0.53
CLN3-227ENST00000567495 AMELXQ99217 191 aa11.77□□□□□ -0.53
CLN3-227ENST00000567495 MRPL35Q9NZE8 188 aaKnown RBP11.77□□□□□ -0.53
CLN3-227ENST00000567495 LINC01549A6NIU2 74 aa11.76□□□□□ -0.53
CLN3-227ENST00000567495 NDUFA1O15239 70 aa11.76□□□□□ -0.53
CLN3-227ENST00000567495 GAGE2BQ13066 116 aa11.76□□□□□ -0.53
CLN3-227ENST00000567495 TIMM17AQ99595 171 aa11.75□□□□□ -0.53
CLN3-227ENST00000567495 RPS10P5Q9NQ39 176 aa11.75□□□□□ -0.53
CLN3-227ENST00000567495 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.74□□□□□ -0.53
CLN3-227ENST00000567495 HNRNPA3P51991 378 aaKnown RBP11.74□□□□□ -0.53
CLN3-227ENST00000567495 SEC11AP67812 179 aa11.74□□□□□ -0.53
CLN3-227ENST00000567495 TOMM6Q96B49 74 aa11.74□□□□□ -0.53
CLN3-227ENST00000567495 LINC00173Q6ZV60 143 aa11.73□□□□□ -0.53
CLN3-227ENST00000567495 ALKBH7Q9BT30 221 aaPredicted RBP11.73□□□□□ -0.53
CLN3-227ENST00000567495 ERASQ7Z444 233 aa11.72□□□□□ -0.53
CLN3-227ENST00000567495 FAM19A3Q7Z5A8 133 aa11.72□□□□□ -0.53
CLN3-227ENST00000567495 LINC01546A6NGU7 62 aa11.71□□□□□ -0.53
CLN3-227ENST00000567495 PRR3P79522 188 aaKnown RBP11.71□□□□□ -0.53
CLN3-227ENST00000567495 RPL18AQ02543 176 aaKnown RBP11.71□□□□□ -0.53
CLN3-227ENST00000567495 FABP9Q0Z7S8 132 aa11.71□□□□□ -0.53
CLN3-227ENST00000567495 TLX1NBP0CAT3 122 aa11.7□□□□□ -0.54
CLN3-227ENST00000567495 KIAA0087Q14695 138 aa11.7□□□□□ -0.54
CLN3-227ENST00000567495 NDUFA5Q16718 116 aa11.7□□□□□ -0.54
CLN3-227ENST00000567495 SCGB3A1Q96QR1 104 aa11.7□□□□□ -0.54
CLN3-227ENST00000567495 MRPL18Q9H0U6 180 aaKnown RBP11.7□□□□□ -0.54
CLN3-227ENST00000567495 A0A0J9YXV3 536 aa11.69□□□□□ -0.54
CLN3-227ENST00000567495 HERVK_113P63121 156 aa11.69□□□□□ -0.54
CLN3-227ENST00000567495 UNQ6190/PRO20217Q6UXQ8 127 aa11.69□□□□□ -0.54
CLN3-227ENST00000567495 TRBV30A0A0K0K1B3 111 aa11.68□□□□□ -0.54
CLN3-227ENST00000567495 C9orf116Q5BN46 136 aaPredicted RBP11.68□□□□□ -0.54
CLN3-227ENST00000567495 C10orf25Q5T742 122 aa11.68□□□□□ -0.54
CLN3-227ENST00000567495 ZC2HC1BQ5TFG8 222 aa11.68□□□□□ -0.54
CLN3-227ENST00000567495 Q6ZRP5 223 aa11.68□□□□□ -0.54
CLN3-227ENST00000567495 FA2HQ7L5A8 372 aa11.68□□□□□ -0.54
CLN3-227ENST00000567495 GEMIN7Q9H840 131 aaKnown RBP11.68□□□□□ -0.54
CLN3-227ENST00000567495 LRP1Q07954 4544 aaKnown RBP11.67□□□□□ -0.54
CLN3-227ENST00000567495 A0A1W2PNN7 141 aa11.67□□□□□ -0.54
CLN3-227ENST00000567495 SNAPINO95295 136 aa11.67□□□□□ -0.54
CLN3-227ENST00000567495 PRSS2P07478 247 aa11.67□□□□□ -0.54
CLN3-227ENST00000567495 SVBPQ8N300 66 aa11.67□□□□□ -0.54
CLN3-227ENST00000567495 PACRGQ96M98 296 aaPredicted RBP11.67□□□□□ -0.54
CLN3-227ENST00000567495 SMCO4Q9NRQ5 59 aa11.67□□□□□ -0.54
CLN3-227ENST00000567495 C6orf48Q9UBA6 75 aa11.67□□□□□ -0.54
CLN3-227ENST00000567495 APOC3P02656 99 aa11.66□□□□□ -0.54
CLN3-227ENST00000567495 CKS1BP61024 79 aa11.64□□□□□ -0.55
CLN3-227ENST00000567495 C6orf226Q5I0X4 101 aa11.64□□□□□ -0.55
CLN3-227ENST00000567495 SERTAD4-AS1Q5TG53 156 aa11.64□□□□□ -0.55
CLN3-227ENST00000567495 Q8IZM0 81 aa11.64□□□□□ -0.55
CLN3-227ENST00000567495 CDKN2A-AS1Q9UH64 79 aa11.63□□□□□ -0.55
CLN3-227ENST00000567495 TRAPPC1Q9Y5R8 145 aa11.63□□□□□ -0.55
CLN3-227ENST00000567495 NDUFC2-KCTD14E9PQ53 114 aa11.62□□□□□ -0.55
CLN3-227ENST00000567495 C2orf82Q6UX34 121 aa11.62□□□□□ -0.55
CLN3-227ENST00000567495 TOMM7Q9P0U1 55 aa11.62□□□□□ -0.55
CLN3-227ENST00000567495 FAT3Q8TDW7 4589 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms