RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 HBBP68871 147 aa9.27□□□□□ -0.93
CLN3-222ENST00000566083 C5orf38Q86SI9 138 aa9.27□□□□□ -0.93
CLN3-222ENST00000566083 SMIM2Q9BVW6 85 aa9.27□□□□□ -0.93
CLN3-222ENST00000566083 S100A1P23297 94 aa9.26□□□□□ -0.93
CLN3-222ENST00000566083 MRPS36P82909 103 aaKnown RBP9.26□□□□□ -0.93
CLN3-222ENST00000566083 SPAG11BQ08648 103 aa9.26□□□□□ -0.93
CLN3-222ENST00000566083 SRSF9Q13242 221 aaKnown RBP eCLIP9.26□□□□□ -0.93
CLN3-222ENST00000566083 RNASE13Q5GAN3 156 aaKnown RBP9.26□□□□□ -0.93
CLN3-222ENST00000566083 Q6ZUT4 128 aa9.26□□□□□ -0.93
CLN3-222ENST00000566083 IMMP2LQ96T52 175 aa9.26□□□□□ -0.93
CLN3-222ENST00000566083 TMEM218A2RU14 115 aa9.24□□□□□ -0.93
CLN3-222ENST00000566083 D6R8Y8 96 aa9.24□□□□□ -0.93
CLN3-222ENST00000566083 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.24□□□□□ -0.93
CLN3-222ENST00000566083 RAB5AP20339 215 aa9.24□□□□□ -0.93
CLN3-222ENST00000566083 RPL18AQ02543 176 aaKnown RBP9.24□□□□□ -0.93
CLN3-222ENST00000566083 MRPL35Q9NZE8 188 aaKnown RBP9.24□□□□□ -0.93
CLN3-222ENST00000566083 ATP5L2Q7Z4Y8 100 aa9.23□□□□□ -0.93
CLN3-222ENST00000566083 IGHV3OR16-9A0A0B4J2B5 98 aa9.22□□□□□ -0.93
CLN3-222ENST00000566083 A0A1B0GXF2 115 aa9.22□□□□□ -0.93
CLN3-222ENST00000566083 NDUFA1O15239 70 aa9.22□□□□□ -0.93
CLN3-222ENST00000566083 ADCYAP1P18509 176 aa9.22□□□□□ -0.93
CLN3-222ENST00000566083 IFI27P40305 119 aaPredicted RBP9.22□□□□□ -0.93
CLN3-222ENST00000566083 RPL39P62891 51 aaKnown RBP9.22□□□□□ -0.93
CLN3-222ENST00000566083 C9orf116Q5BN46 136 aaPredicted RBP9.22□□□□□ -0.93
CLN3-222ENST00000566083 MRPL54Q6P161 138 aaKnown RBP9.22□□□□□ -0.93
CLN3-222ENST00000566083 ORMDL3Q8N138 153 aa9.22□□□□□ -0.93
CLN3-222ENST00000566083 ORAOV1Q8WV07 137 aa9.22□□□□□ -0.93
CLN3-222ENST00000566083 TGIF2-C20orf24A0A0A6YYL0 155 aa9.22□□□□□ -0.93
CLN3-222ENST00000566083 A0A1W2PNN7 141 aa9.22□□□□□ -0.93
CLN3-222ENST00000566083 IFITM10A6NMD0 228 aa9.22□□□□□ -0.93
CLN3-222ENST00000566083 MT-ND6P03923 174 aa9.22□□□□□ -0.93
CLN3-222ENST00000566083 KRTAP10-8P60410 259 aa9.22□□□□□ -0.93
CLN3-222ENST00000566083 NPYP01303 97 aa9.21□□□□□ -0.94
CLN3-222ENST00000566083 C10orf91Q5T1B1 145 aa9.21□□□□□ -0.94
CLN3-222ENST00000566083 TMEM136Q6ZRR5 245 aa9.21□□□□□ -0.94
CLN3-222ENST00000566083 LAMTOR2Q9Y2Q5 125 aa9.21□□□□□ -0.94
CLN3-222ENST00000566083 PYGO1Q9Y3Y4 419 aa9.21□□□□□ -0.94
CLN3-222ENST00000566083 TLX1NBP0CAT3 122 aa9.2□□□□□ -0.94
CLN3-222ENST00000566083 PRELID3AQ96N28 172 aa9.19□□□□□ -0.94
CLN3-222ENST00000566083 OPRPNQ99935 248 aaPredicted RBP9.19□□□□□ -0.94
CLN3-222ENST00000566083 SEC11CQ9BY50 192 aa9.19□□□□□ -0.94
CLN3-222ENST00000566083 PSORS1C2Q9UIG4 136 aa9.19□□□□□ -0.94
CLN3-222ENST00000566083 TNXBP22105 4242 aa9.19□□□□□ -0.94
CLN3-222ENST00000566083 A0A087WZ39 114 aa9.18□□□□□ -0.94
CLN3-222ENST00000566083 FAM104AQ969W3 186 aa9.18□□□□□ -0.94
CLN3-222ENST00000566083 PRSS47A8MTI9 375 aa9.17□□□□□ -0.94
CLN3-222ENST00000566083 PNRC1Q12796 327 aaPredicted RBP9.17□□□□□ -0.94
CLN3-222ENST00000566083 C1orf137Q5JT78 98 aa9.17□□□□□ -0.94
CLN3-222ENST00000566083 TMEM141Q96I45 108 aa9.17□□□□□ -0.94
CLN3-222ENST00000566083 CARHSP1Q9Y2V2 147 aaKnown RBP9.17□□□□□ -0.94
CLN3-222ENST00000566083 LINC01561Q8N1V8 128 aa9.16□□□□□ -0.94
CLN3-222ENST00000566083 C2orf88Q9BSF0 95 aa9.16□□□□□ -0.94
CLN3-222ENST00000566083 TRBV30A0A0K0K1B3 111 aa9.15□□□□□ -0.94
CLN3-222ENST00000566083 K7EMI3 77 aa9.15□□□□□ -0.94
CLN3-222ENST00000566083 NPSP0C0P6 89 aa9.15□□□□□ -0.94
CLN3-222ENST00000566083 Q6ZN92 141 aa9.15□□□□□ -0.94
CLN3-222ENST00000566083 TEX43Q6ZNM6 134 aa9.15□□□□□ -0.94
CLN3-222ENST00000566083 PHF5AQ7RTV0 110 aaKnown RBP9.15□□□□□ -0.94
CLN3-222ENST00000566083 DIRC1Q969H9 104 aa9.15□□□□□ -0.94
CLN3-222ENST00000566083 MAP1LC3AQ9H492 121 aa9.15□□□□□ -0.94
CLN3-222ENST00000566083 APOC3P02656 99 aa9.14□□□□□ -0.95
CLN3-222ENST00000566083 MT-ND4LP03901 98 aa9.14□□□□□ -0.95
CLN3-222ENST00000566083 LINC00242Q5T6M2 205 aa9.14□□□□□ -0.95
CLN3-222ENST00000566083 UNQ6190/PRO20217Q6UXQ8 127 aa9.14□□□□□ -0.95
CLN3-222ENST00000566083 ANAPC16Q96DE5 110 aa9.14□□□□□ -0.95
CLN3-222ENST00000566083 IGLV4-3A0A075B6K6 122 aa9.14□□□□□ -0.95
CLN3-222ENST00000566083 G0S2P27469 103 aa9.14□□□□□ -0.95
CLN3-222ENST00000566083 PACRGQ96M98 296 aaPredicted RBP9.14□□□□□ -0.95
CLN3-222ENST00000566083 C6orf48Q9UBA6 75 aa9.14□□□□□ -0.95
CLN3-222ENST00000566083 CYSLTR1Q9Y271 337 aa9.14□□□□□ -0.95
CLN3-222ENST00000566083 IGLV7-43P04211 117 aa9.13□□□□□ -0.95
CLN3-222ENST00000566083 ORMDL2Q53FV1 153 aa9.13□□□□□ -0.95
CLN3-222ENST00000566083 C10orf25Q5T742 122 aa9.13□□□□□ -0.95
CLN3-222ENST00000566083 KIAA0087Q14695 138 aa9.12□□□□□ -0.95
CLN3-222ENST00000566083 GAGE2EQ4V326 116 aa9.12□□□□□ -0.95
CLN3-222ENST00000566083 PAPPA-AS1Q5QFB9 102 aa9.12□□□□□ -0.95
CLN3-222ENST00000566083 Q8N8P6 123 aa9.12□□□□□ -0.95
CLN3-222ENST00000566083 VCX2Q9H322 139 aa9.12□□□□□ -0.95
CLN3-222ENST00000566083 GAGE2DQ9UEU5 116 aa9.12□□□□□ -0.95
CLN3-222ENST00000566083 RNF213Q63HN8 5207 aa9.11□□□□□ -0.95
CLN3-222ENST00000566083 NDUFC2-KCTD14E9PQ53 114 aa9.11□□□□□ -0.95
CLN3-222ENST00000566083 SEC11AP67812 179 aa9.11□□□□□ -0.95
CLN3-222ENST00000566083 C2orf66Q6UXQ4 117 aa9.11□□□□□ -0.95
CLN3-222ENST00000566083 SVBPQ8N300 66 aa9.11□□□□□ -0.95
CLN3-222ENST00000566083 LOC389332A0A1B0GUA5 103 aa9.1□□□□□ -0.95
CLN3-222ENST00000566083 PRSS2P07478 247 aa9.1□□□□□ -0.95
CLN3-222ENST00000566083 UBE2D1P51668 147 aa9.1□□□□□ -0.95
CLN3-222ENST00000566083 LRP2P98164 4655 aa9.1□□□□□ -0.95
CLN3-222ENST00000566083 NXT2Q9NPJ8 142 aaKnown RBP9.1□□□□□ -0.95
CLN3-222ENST00000566083 FAM19A5Q7Z5A7 132 aaPredicted RBP9.09□□□□□ -0.95
CLN3-222ENST00000566083 AMELXQ99217 191 aa9.09□□□□□ -0.95
CLN3-222ENST00000566083 FAM168BA1KXE4 195 aa9.08□□□□□ -0.96
CLN3-222ENST00000566083 H0Y9J4 135 aa9.08□□□□□ -0.96
CLN3-222ENST00000566083 M0QXV9 152 aa9.08□□□□□ -0.96
CLN3-222ENST00000566083 SCO1O75880 301 aa9.08□□□□□ -0.96
CLN3-222ENST00000566083 SNAPINO95295 136 aa9.08□□□□□ -0.96
CLN3-222ENST00000566083 CKS1BP61024 79 aa9.08□□□□□ -0.96
CLN3-222ENST00000566083 UBE2BP63146 152 aa9.08□□□□□ -0.96
CLN3-222ENST00000566083 IGLV1-50A0A075B6I6 118 aa9.07□□□□□ -0.96
CLN3-222ENST00000566083 ODF1Q14990 250 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms