RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 CCL25O15444 150 aa20.67■□□□□ 0.9
CTCF-203ENST00000566078 Q9H8V8 135 aa20.67■□□□□ 0.9
CTCF-203ENST00000566078 CDKN2A-AS1Q9UH64 79 aa20.67■□□□□ 0.9
CTCF-203ENST00000566078 IGLV10-54A0A075B6I4 117 aa20.65■□□□□ 0.9
CTCF-203ENST00000566078 TMEM223A0PJW6 202 aa20.64■□□□□ 0.9
CTCF-203ENST00000566078 XCL1P47992 114 aa20.64■□□□□ 0.9
CTCF-203ENST00000566078 HERVK_113P61574 105 aa20.64■□□□□ 0.9
CTCF-203ENST00000566078 H3BRM9 83 aa20.63■□□□□ 0.89
CTCF-203ENST00000566078 CHCHD10Q8WYQ3 142 aaPredicted RBP20.63■□□□□ 0.89
CTCF-203ENST00000566078 PRO1933Q9H354 126 aa20.63■□□□□ 0.89
CTCF-203ENST00000566078 IGKV2D-26A0A0A0MRZ7 120 aa20.6■□□□□ 0.89
CTCF-203ENST00000566078 SPINK8P0C7L1 97 aa20.6■□□□□ 0.89
CTCF-203ENST00000566078 NMUP48645 174 aa20.6■□□□□ 0.89
CTCF-203ENST00000566078 MIAQ16674 131 aa20.6■□□□□ 0.89
CTCF-203ENST00000566078 IGHV3-64A0A075B6Q5 118 aa20.6■□□□□ 0.89
CTCF-203ENST00000566078 E9PLD3 99 aa20.6■□□□□ 0.89
CTCF-203ENST00000566078 IGHV3OR16-9A0A0B4J2B5 98 aa20.59■□□□□ 0.89
CTCF-203ENST00000566078 DNAH1Q9P2D7 4330 aa20.59■□□□□ 0.89
CTCF-203ENST00000566078 TRAV8-4A0A0B4J246 113 aa20.57■□□□□ 0.88
CTCF-203ENST00000566078 CD164L2Q6UWJ8 174 aa20.57■□□□□ 0.88
CTCF-203ENST00000566078 C10orf126Q8N4M7 172 aa20.57■□□□□ 0.88
CTCF-203ENST00000566078 TRAV8-3A0A0A6YYJ7 113 aa20.56■□□□□ 0.88
CTCF-203ENST00000566078 C14orf144Q96I85 54 aa20.56■□□□□ 0.88
CTCF-203ENST00000566078 VPS13DQ5THJ4 4388 aa20.56■□□□□ 0.88
CTCF-203ENST00000566078 CASC10Q5T4H9 136 aa20.56■□□□□ 0.88
CTCF-203ENST00000566078 C5orf38Q86SI9 138 aa20.56■□□□□ 0.88
CTCF-203ENST00000566078 IBA57-AS1B1ANH7 110 aa20.55■□□□□ 0.88
CTCF-203ENST00000566078 GAGE12HA6NDE8 117 aa20.54■□□□□ 0.88
CTCF-203ENST00000566078 SMIM1B2RUZ4 78 aa20.53■□□□□ 0.88
CTCF-203ENST00000566078 TSTD3H0UI37 97 aa20.53■□□□□ 0.88
CTCF-203ENST00000566078 Q9HAA7 133 aa20.53■□□□□ 0.88
CTCF-203ENST00000566078 A0A087WZ39 114 aa20.53■□□□□ 0.88
CTCF-203ENST00000566078 IGHV1-58A0A0C4DH39 117 aa20.53■□□□□ 0.88
CTCF-203ENST00000566078 C3orf84H3BNL1 204 aa20.53■□□□□ 0.88
CTCF-203ENST00000566078 LEPROTO15243 131 aa20.53■□□□□ 0.88
CTCF-203ENST00000566078 FOXI1Q12951 378 aa20.53■□□□□ 0.88
CTCF-203ENST00000566078 PCP2Q8IVA1 136 aa20.52■□□□□ 0.88
CTCF-203ENST00000566078 K7EP13 123 aa20.51■□□□□ 0.87
CTCF-203ENST00000566078 COX8AP10176 69 aa20.51■□□□□ 0.87
CTCF-203ENST00000566078 TTTY13Q9BZ97 58 aa20.51■□□□□ 0.87
CTCF-203ENST00000566078 TSPEAR-AS2P59090 65 aa20.5■□□□□ 0.87
CTCF-203ENST00000566078 C1orf43Q9BWL3 253 aa20.5■□□□□ 0.87
CTCF-203ENST00000566078 TP73-AS1Q9UF72 201 aa20.5■□□□□ 0.87
CTCF-203ENST00000566078 COX7A2LO14548 114 aa20.49■□□□□ 0.87
CTCF-203ENST00000566078 IGKV2D-24A0A075B6R9 120 aa20.49■□□□□ 0.87
CTCF-203ENST00000566078 PLEKHB2Q96CS7 222 aa20.49■□□□□ 0.87
CTCF-203ENST00000566078 KRTAP1-5Q9BYS1 174 aa20.49■□□□□ 0.87
CTCF-203ENST00000566078 IGLV5-39A0A0G2JS06 123 aa20.48■□□□□ 0.87
CTCF-203ENST00000566078 J3QQQ9 107 aa20.48■□□□□ 0.87
CTCF-203ENST00000566078 LGALS3P17931 250 aaKnown RBP20.46■□□□□ 0.87
CTCF-203ENST00000566078 SLC25A34Q6PIV7 304 aa20.46■□□□□ 0.87
CTCF-203ENST00000566078 UQCR10Q9UDW1 63 aa20.46■□□□□ 0.87
CTCF-203ENST00000566078 KRTAP26-1Q6PEX3 210 aa20.45■□□□□ 0.87
CTCF-203ENST00000566078 MALP21145 153 aa20.45■□□□□ 0.86
CTCF-203ENST00000566078 LINC01561Q8N1V8 128 aa20.45■□□□□ 0.86
CTCF-203ENST00000566078 BOD1L2Q8IYS8 172 aa20.44■□□□□ 0.86
CTCF-203ENST00000566078 MAPKAPK5-AS1Q8N8E1 139 aa20.44■□□□□ 0.86
CTCF-203ENST00000566078 TTC32Q5I0X7 151 aa20.42■□□□□ 0.86
CTCF-203ENST00000566078 MIEN1Q9BRT3 115 aa20.42■□□□□ 0.86
CTCF-203ENST00000566078 ALMS1Q8TCU4 4167 aa20.42■□□□□ 0.86
CTCF-203ENST00000566078 NBDYA0A0U1RRE5 68 aa20.42■□□□□ 0.86
CTCF-203ENST00000566078 RMI2Q96E14 147 aa20.42■□□□□ 0.86
CTCF-203ENST00000566078 PCP4L1A6NKN8 68 aa20.41■□□□□ 0.86
CTCF-203ENST00000566078 ZNF815PA8K554 130 aa20.41■□□□□ 0.86
CTCF-203ENST00000566078 TOMM7Q9P0U1 55 aa20.41■□□□□ 0.86
CTCF-203ENST00000566078 COX7B2Q8TF08 81 aa20.4■□□□□ 0.86
CTCF-203ENST00000566078 MYMXA0A1B0GTQ4 84 aa20.39■□□□□ 0.86
CTCF-203ENST00000566078 DLEU1O43261 78 aa20.39■□□□□ 0.86
CTCF-203ENST00000566078 ORAOV1Q8WV07 137 aa20.38■□□□□ 0.85
CTCF-203ENST00000566078 APOMO95445 188 aa20.37■□□□□ 0.85
CTCF-203ENST00000566078 LY6G6CO95867 125 aa20.36■□□□□ 0.85
CTCF-203ENST00000566078 LINC00476Q8WZB0 136 aa20.35■□□□□ 0.85
CTCF-203ENST00000566078 NDUFA12Q9UI09 145 aa20.35■□□□□ 0.85
CTCF-203ENST00000566078 DDTP30046 118 aa20.35■□□□□ 0.85
CTCF-203ENST00000566078 HNRNPA3P51991 378 aaKnown RBP20.33■□□□□ 0.84
CTCF-203ENST00000566078 DNAH6Q9C0G6 4158 aa20.33■□□□□ 0.84
CTCF-203ENST00000566078 PRSS2P07478 247 aa20.32■□□□□ 0.84
CTCF-203ENST00000566078 Q8IZM0 81 aa20.32■□□□□ 0.84
CTCF-203ENST00000566078 M0R2N4 97 aa20.31■□□□□ 0.84
CTCF-203ENST00000566078 NDUFA1O15239 70 aa20.31■□□□□ 0.84
CTCF-203ENST00000566078 C2orf91Q6ZV80 131 aa20.31■□□□□ 0.84
CTCF-203ENST00000566078 COX11Q9Y6N1 276 aa20.31■□□□□ 0.84
CTCF-203ENST00000566078 TM2D2Q9BX73 214 aa20.3■□□□□ 0.84
CTCF-203ENST00000566078 SPAG11BQ08648 103 aa20.29■□□□□ 0.84
CTCF-203ENST00000566078 C6orf226Q5I0X4 101 aa20.29■□□□□ 0.84
CTCF-203ENST00000566078 SCGB1D4Q6XE38 83 aa20.29■□□□□ 0.84
CTCF-203ENST00000566078 CFAP161Q6P656 301 aa20.28■□□□□ 0.84
CTCF-203ENST00000566078 DNAH10Q8IVF4 4471 aa20.28■□□□□ 0.84
CTCF-203ENST00000566078 KIAA0087Q14695 138 aa20.27■□□□□ 0.84
CTCF-203ENST00000566078 C15orf56Q8N910 161 aa20.27■□□□□ 0.84
CTCF-203ENST00000566078 ZNF625Q96I27 306 aaPredicted RBP20.27■□□□□ 0.84
CTCF-203ENST00000566078 KMT2AQ03164 3969 aa20.27■□□□□ 0.84
CTCF-203ENST00000566078 A0A0J9YXY3 114 aa20.24■□□□□ 0.83
CTCF-203ENST00000566078 HIGD2BQ4VC39 106 aa20.24■□□□□ 0.83
CTCF-203ENST00000566078 PSCAO43653 123 aa20.23■□□□□ 0.83
CTCF-203ENST00000566078 LINC00526Q96FQ7 95 aa20.23■□□□□ 0.83
CTCF-203ENST00000566078 HIGD1BQ9P298 99 aa20.23■□□□□ 0.83
CTCF-203ENST00000566078 CKS1BP61024 79 aa20.22■□□□□ 0.83
CTCF-203ENST00000566078 C2orf82Q6UX34 121 aa20.22■□□□□ 0.83
CTCF-203ENST00000566078 Q6ZR54 194 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms