RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 SS18Q15532 418 aa6.28□□□□□ -1.4
CLN3-220ENST00000566040 FAM19A3Q7Z5A8 133 aa6.28□□□□□ -1.4
CLN3-220ENST00000566040 CIRBP-AS1Q8TBR5 109 aa6.28□□□□□ -1.4
CLN3-220ENST00000566040 CYSLTR1Q9Y271 337 aa6.28□□□□□ -1.4
CLN3-220ENST00000566040 LRP1Q07954 4544 aaKnown RBP6.27□□□□□ -1.41
CLN3-220ENST00000566040 IGHV1-58A0A0C4DH39 117 aa6.27□□□□□ -1.41
CLN3-220ENST00000566040 IFITM10A6NMD0 228 aa6.27□□□□□ -1.41
CLN3-220ENST00000566040 C1orf196B1AJZ1 125 aa6.27□□□□□ -1.41
CLN3-220ENST00000566040 RAB5AP20339 215 aa6.27□□□□□ -1.41
CLN3-220ENST00000566040 NDUFA5Q16718 116 aa6.27□□□□□ -1.41
CLN3-220ENST00000566040 ORMDL2Q53FV1 153 aa6.27□□□□□ -1.41
CLN3-220ENST00000566040 C5orf38Q86SI9 138 aa6.27□□□□□ -1.41
CLN3-220ENST00000566040 TMEM18Q96B42 140 aa6.27□□□□□ -1.41
CLN3-220ENST00000566040 TMEM141Q96I45 108 aa6.27□□□□□ -1.41
CLN3-220ENST00000566040 CHAC1Q9BUX1 264 aa6.27□□□□□ -1.41
CLN3-220ENST00000566040 FLG2Q5D862 2391 aaPredicted RBP6.26□□□□□ -1.41
CLN3-220ENST00000566040 COLCA2A8K830 154 aa6.26□□□□□ -1.41
CLN3-220ENST00000566040 KIAA0087Q14695 138 aa6.26□□□□□ -1.41
CLN3-220ENST00000566040 Q5VSD8 79 aa6.26□□□□□ -1.41
CLN3-220ENST00000566040 PRSS3P2Q8NHM4 247 aa6.26□□□□□ -1.41
CLN3-220ENST00000566040 TIMM17AQ99595 171 aa6.26□□□□□ -1.41
CLN3-220ENST00000566040 TRAPPC1Q9Y5R8 145 aa6.26□□□□□ -1.41
CLN3-220ENST00000566040 IGLV4-69A0A075B6H9 119 aa6.25□□□□□ -1.41
CLN3-220ENST00000566040 IGHV3-64A0A075B6Q5 118 aa6.25□□□□□ -1.41
CLN3-220ENST00000566040 COX7A2LO14548 114 aa6.25□□□□□ -1.41
CLN3-220ENST00000566040 SCO1O75880 301 aa6.25□□□□□ -1.41
CLN3-220ENST00000566040 NPSP0C0P6 89 aa6.25□□□□□ -1.41
CLN3-220ENST00000566040 C10orf25Q5T742 122 aa6.25□□□□□ -1.41
CLN3-220ENST00000566040 Q6ZRU5 148 aa6.25□□□□□ -1.41
CLN3-220ENST00000566040 SPACA4Q8TDM5 124 aa6.25□□□□□ -1.41
CLN3-220ENST00000566040 A0A087WZ39 114 aa6.24□□□□□ -1.41
CLN3-220ENST00000566040 A0A096LNI7 61 aa6.24□□□□□ -1.41
CLN3-220ENST00000566040 SMAGPQ0VAQ4 97 aa6.24□□□□□ -1.41
CLN3-220ENST00000566040 PMCHL1Q16048 86 aa6.24□□□□□ -1.41
CLN3-220ENST00000566040 PDZD11Q5EBL8 140 aa6.24□□□□□ -1.41
CLN3-220ENST00000566040 SMCO4Q9NRQ5 59 aa6.24□□□□□ -1.41
CLN3-220ENST00000566040 EPM2AB3EWF7 344 aa6.23□□□□□ -1.41
CLN3-220ENST00000566040 CFAP161Q6P656 301 aa6.23□□□□□ -1.41
CLN3-220ENST00000566040 ERASQ7Z444 233 aa6.23□□□□□ -1.41
CLN3-220ENST00000566040 IGLV5-45A0A087WSX0 123 aa6.22□□□□□ -1.41
CLN3-220ENST00000566040 A0A0J9YXV3 536 aa6.22□□□□□ -1.41
CLN3-220ENST00000566040 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.22□□□□□ -1.41
CLN3-220ENST00000566040 SPAG11BQ08648 103 aa6.22□□□□□ -1.41
CLN3-220ENST00000566040 TEX43Q6ZNM6 134 aa6.22□□□□□ -1.41
CLN3-220ENST00000566040 LINC00528Q8N1L1 170 aa6.22□□□□□ -1.41
CLN3-220ENST00000566040 CARD19Q96LW7 228 aa6.22□□□□□ -1.41
CLN3-220ENST00000566040 AP5S1Q9NUS5 200 aa6.22□□□□□ -1.41
CLN3-220ENST00000566040 NUPR1O60356 82 aa6.21□□□□□ -1.42
CLN3-220ENST00000566040 TRGC2P03986 189 aa6.21□□□□□ -1.42
CLN3-220ENST00000566040 LINC00614P0C842 121 aa6.21□□□□□ -1.42
CLN3-220ENST00000566040 HNRNPA3P51991 378 aaKnown RBP6.21□□□□□ -1.42
CLN3-220ENST00000566040 SYCNQ0VAF6 134 aa6.21□□□□□ -1.42
CLN3-220ENST00000566040 FA2HQ7L5A8 372 aa6.21□□□□□ -1.42
CLN3-220ENST00000566040 OR10D4PQ8NGN7 298 aa6.21□□□□□ -1.42
CLN3-220ENST00000566040 ORAOV1Q8WV07 137 aa6.21□□□□□ -1.42
CLN3-220ENST00000566040 C2orf48Q96LS8 159 aa6.21□□□□□ -1.42
CLN3-220ENST00000566040 SCGB3A1Q96QR1 104 aa6.21□□□□□ -1.42
CLN3-220ENST00000566040 PLAC8Q9NZF1 115 aa6.21□□□□□ -1.42
CLN3-220ENST00000566040 CDKN2A-AS1Q9UH64 79 aa6.21□□□□□ -1.42
CLN3-220ENST00000566040 A0A087WYN8 130 aa6.2□□□□□ -1.42
CLN3-220ENST00000566040 UNQ6190/PRO20217Q6UXQ8 127 aa6.2□□□□□ -1.42
CLN3-220ENST00000566040 KRTAP7-1Q8IUC3 87 aa6.2□□□□□ -1.42
CLN3-220ENST00000566040 LINC01561Q8N1V8 128 aa6.2□□□□□ -1.42
CLN3-220ENST00000566040 VCX2Q9H322 139 aa6.2□□□□□ -1.42
CLN3-220ENST00000566040 CST9LQ9H4G1 147 aa6.2□□□□□ -1.42
CLN3-220ENST00000566040 C6orf48Q9UBA6 75 aa6.2□□□□□ -1.42
CLN3-220ENST00000566040 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.19□□□□□ -1.42
CLN3-220ENST00000566040 SMIM1B2RUZ4 78 aa6.19□□□□□ -1.42
CLN3-220ENST00000566040 C2orf82Q6UX34 121 aa6.19□□□□□ -1.42
CLN3-220ENST00000566040 HERC1Q15751 4861 aa6.18□□□□□ -1.42
CLN3-220ENST00000566040 IGKV2-24A0A0C4DH68 120 aa6.18□□□□□ -1.42
CLN3-220ENST00000566040 TINCRA0A1B0GVN0 87 aa6.18□□□□□ -1.42
CLN3-220ENST00000566040 ZNF561-AS1K7EIQ3 104 aa6.18□□□□□ -1.42
CLN3-220ENST00000566040 HBDP02042 147 aa6.18□□□□□ -1.42
CLN3-220ENST00000566040 IGLC3P0DOY3 106 aa6.18□□□□□ -1.42
CLN3-220ENST00000566040 MALP21145 153 aa6.18□□□□□ -1.42
CLN3-220ENST00000566040 Q6ZN92 141 aa6.18□□□□□ -1.42
CLN3-220ENST00000566040 C2orf88Q9BSF0 95 aa6.18□□□□□ -1.42
CLN3-220ENST00000566040 MRPL35Q9NZE8 188 aaKnown RBP6.18□□□□□ -1.42
CLN3-220ENST00000566040 A0A1W2PNN7 141 aa6.17□□□□□ -1.42
CLN3-220ENST00000566040 PTTG1IPP53801 180 aa6.17□□□□□ -1.42
CLN3-220ENST00000566040 PMVKQ15126 192 aa6.17□□□□□ -1.42
CLN3-220ENST00000566040 RNF151Q2KHN1 245 aa6.17□□□□□ -1.42
CLN3-220ENST00000566040 CAMK2N2Q96S95 79 aa6.17□□□□□ -1.42
CLN3-220ENST00000566040 TNXBP22105 4242 aa6.17□□□□□ -1.42
CLN3-220ENST00000566040 IGLV5-39A0A0G2JS06 123 aa6.16□□□□□ -1.42
CLN3-220ENST00000566040 SERF1AO75920 110 aa6.16□□□□□ -1.42
CLN3-220ENST00000566040 APOMO95445 188 aa6.16□□□□□ -1.42
CLN3-220ENST00000566040 TLX1NBP0CAT3 122 aa6.16□□□□□ -1.42
CLN3-220ENST00000566040 ZNF22P17026 224 aaPredicted RBP6.16□□□□□ -1.42
CLN3-220ENST00000566040 G0S2P27469 103 aa6.16□□□□□ -1.42
CLN3-220ENST00000566040 HERVK_113P63121 156 aa6.16□□□□□ -1.42
CLN3-220ENST00000566040 C9orf116Q5BN46 136 aaPredicted RBP6.16□□□□□ -1.42
CLN3-220ENST00000566040 Q6ZRP5 223 aa6.16□□□□□ -1.42
CLN3-220ENST00000566040 FAM19A2Q8N3H0 131 aa6.16□□□□□ -1.42
CLN3-220ENST00000566040 CHCHD1Q96BP2 118 aaKnown RBP6.16□□□□□ -1.42
CLN3-220ENST00000566040 DMBT1Q9UGM3 2413 aaPredicted RBP6.16□□□□□ -1.42
CLN3-220ENST00000566040 LINC01549A6NIU2 74 aa6.15□□□□□ -1.42
CLN3-220ENST00000566040 C11orf86A6NJI1 115 aa6.15□□□□□ -1.42
CLN3-220ENST00000566040 MAJINQ3KP22 176 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms