RNA–Protein interactions for RNA: ENST00000565453.1

CDH3-204, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-204ENST00000565453 A0A1W2PNN7 141 aa9.72□□□□□ -0.85
CDH3-204ENST00000565453 SPAG11BQ08648 103 aa9.72□□□□□ -0.85
CDH3-204ENST00000565453 TMEM136Q6ZRR5 245 aa9.72□□□□□ -0.85
CDH3-204ENST00000565453 OR10D4PQ8NGN7 298 aa9.72□□□□□ -0.85
CDH3-204ENST00000565453 PRELID3AQ96N28 172 aa9.72□□□□□ -0.85
CDH3-204ENST00000565453 TNXBP22105 4242 aa9.71□□□□□ -0.85
CDH3-204ENST00000565453 PRSS47A8MTI9 375 aa9.71□□□□□ -0.86
CDH3-204ENST00000565453 RNF151Q2KHN1 245 aa9.71□□□□□ -0.86
CDH3-204ENST00000565453 LINC01600Q96MT4 127 aa9.71□□□□□ -0.86
CDH3-204ENST00000565453 SRSF9Q13242 221 aaKnown RBP eCLIP9.7□□□□□ -0.86
CDH3-204ENST00000565453 PYGO1Q9Y3Y4 419 aa9.7□□□□□ -0.86
CDH3-204ENST00000565453 A0A0J9YXV3 536 aa9.69□□□□□ -0.86
CDH3-204ENST00000565453 IFITM10A6NMD0 228 aa9.69□□□□□ -0.86
CDH3-204ENST00000565453 PNRC1Q12796 327 aaPredicted RBP9.69□□□□□ -0.86
CDH3-204ENST00000565453 SPINK6Q6UWN8 80 aa9.69□□□□□ -0.86
CDH3-204ENST00000565453 Q6ZRP5 223 aa9.69□□□□□ -0.86
CDH3-204ENST00000565453 ORAOV1Q8WV07 137 aa9.69□□□□□ -0.86
CDH3-204ENST00000565453 MRPL35Q9NZE8 188 aaKnown RBP9.69□□□□□ -0.86
CDH3-204ENST00000565453 IGLV4-3A0A075B6K6 122 aa9.68□□□□□ -0.86
CDH3-204ENST00000565453 F8WDY8 70 aa9.68□□□□□ -0.86
CDH3-204ENST00000565453 C9orf116Q5BN46 136 aaPredicted RBP9.68□□□□□ -0.86
CDH3-204ENST00000565453 ANAPC16Q96DE5 110 aa9.68□□□□□ -0.86
CDH3-204ENST00000565453 LAMTOR2Q9Y2Q5 125 aa9.68□□□□□ -0.86
CDH3-204ENST00000565453 RAB5AP20339 215 aa9.67□□□□□ -0.86
CDH3-204ENST00000565453 IFI27P40305 119 aaPredicted RBP9.67□□□□□ -0.86
CDH3-204ENST00000565453 RPL18AQ02543 176 aaKnown RBP9.67□□□□□ -0.86
CDH3-204ENST00000565453 C10orf25Q5T742 122 aa9.67□□□□□ -0.86
CDH3-204ENST00000565453 A0A087WZ39 114 aa9.65□□□□□ -0.86
CDH3-204ENST00000565453 LOC389332A0A1B0GUA5 103 aa9.65□□□□□ -0.86
CDH3-204ENST00000565453 NDUFA1O15239 70 aa9.65□□□□□ -0.86
CDH3-204ENST00000565453 MT-ND4LP03901 98 aa9.65□□□□□ -0.86
CDH3-204ENST00000565453 KRTAP10-8P60410 259 aa9.65□□□□□ -0.86
CDH3-204ENST00000565453 KIAA0087Q14695 138 aa9.65□□□□□ -0.86
CDH3-204ENST00000565453 LINC00242Q5T6M2 205 aa9.65□□□□□ -0.86
CDH3-204ENST00000565453 UNQ6190/PRO20217Q6UXQ8 127 aa9.65□□□□□ -0.86
CDH3-204ENST00000565453 Q8N8P6 123 aa9.65□□□□□ -0.86
CDH3-204ENST00000565453 MAP1LC3AQ9H492 121 aa9.65□□□□□ -0.86
CDH3-204ENST00000565453 TLX1NBP0CAT3 122 aa9.64□□□□□ -0.87
CDH3-204ENST00000565453 RAB14P61106 215 aa9.64□□□□□ -0.87
CDH3-204ENST00000565453 TMEM141Q96I45 108 aa9.64□□□□□ -0.87
CDH3-204ENST00000565453 C6orf48Q9UBA6 75 aa9.64□□□□□ -0.87
CDH3-204ENST00000565453 TGIF2-C20orf24A0A0A6YYL0 155 aa9.63□□□□□ -0.87
CDH3-204ENST00000565453 REG3GQ6UW15 175 aa9.63□□□□□ -0.87
CDH3-204ENST00000565453 PHF5AQ7RTV0 110 aaKnown RBP9.63□□□□□ -0.87
CDH3-204ENST00000565453 IMMP2LQ96T52 175 aa9.63□□□□□ -0.87
CDH3-204ENST00000565453 PSORS1C2Q9UIG4 136 aa9.63□□□□□ -0.87
CDH3-204ENST00000565453 UBE2D1P51668 147 aa9.62□□□□□ -0.87
CDH3-204ENST00000565453 ODF1Q14990 250 aa9.62□□□□□ -0.87
CDH3-204ENST00000565453 CLLU1Q5K131 121 aa9.62□□□□□ -0.87
CDH3-204ENST00000565453 C2orf66Q6UXQ4 117 aa9.62□□□□□ -0.87
CDH3-204ENST00000565453 LINC00173Q6ZV60 143 aa9.62□□□□□ -0.87
CDH3-204ENST00000565453 CYSLTR1Q9Y271 337 aa9.62□□□□□ -0.87
CDH3-204ENST00000565453 ZC2HC1BQ5TFG8 222 aa9.61□□□□□ -0.87
CDH3-204ENST00000565453 TEX43Q6ZNM6 134 aa9.61□□□□□ -0.87
CDH3-204ENST00000565453 AMELXQ99217 191 aa9.61□□□□□ -0.87
CDH3-204ENST00000565453 UBR4Q5T4S7 5183 aa9.6□□□□□ -0.87
CDH3-204ENST00000565453 FAM168BA1KXE4 195 aa9.6□□□□□ -0.87
CDH3-204ENST00000565453 LINC01561Q8N1V8 128 aa9.6□□□□□ -0.87
CDH3-204ENST00000565453 IGIPA6NJ69 53 aa9.59□□□□□ -0.87
CDH3-204ENST00000565453 K7EMI3 77 aa9.59□□□□□ -0.87
CDH3-204ENST00000565453 MT-ND6P03923 174 aa9.59□□□□□ -0.87
CDH3-204ENST00000565453 NPSP0C0P6 89 aa9.59□□□□□ -0.87
CDH3-204ENST00000565453 ADCYAP1P18509 176 aa9.59□□□□□ -0.87
CDH3-204ENST00000565453 ORMDL2Q53FV1 153 aa9.59□□□□□ -0.87
CDH3-204ENST00000565453 FAM19A3Q7Z5A8 133 aa9.59□□□□□ -0.87
CDH3-204ENST00000565453 KRTAP11-1Q8IUC1 163 aa9.59□□□□□ -0.87
CDH3-204ENST00000565453 KRTAP7-1Q8IUC3 87 aa9.59□□□□□ -0.87
CDH3-204ENST00000565453 TRBV30A0A0K0K1B3 111 aa9.58□□□□□ -0.88
CDH3-204ENST00000565453 C2orf88Q9BSF0 95 aa9.58□□□□□ -0.88
CDH3-204ENST00000565453 C1orf137Q5JT78 98 aa9.57□□□□□ -0.88
CDH3-204ENST00000565453 C2orf82Q6UX34 121 aa9.57□□□□□ -0.88
CDH3-204ENST00000565453 Q6ZN92 141 aa9.57□□□□□ -0.88
CDH3-204ENST00000565453 CTDSP1Q9GZU7 261 aa9.57□□□□□ -0.88
CDH3-204ENST00000565453 VCX2Q9H322 139 aa9.57□□□□□ -0.88
CDH3-204ENST00000565453 NXT2Q9NPJ8 142 aaKnown RBP9.57□□□□□ -0.88
CDH3-204ENST00000565453 GAGE2EQ4V326 116 aa9.56□□□□□ -0.88
CDH3-204ENST00000565453 GAGE2DQ9UEU5 116 aa9.56□□□□□ -0.88
CDH3-204ENST00000565453 FAM19A5Q7Z5A7 132 aaPredicted RBP9.55□□□□□ -0.88
CDH3-204ENST00000565453 TMEM218A2RU14 115 aa9.54□□□□□ -0.88
CDH3-204ENST00000565453 NDUFC2-KCTD14E9PQ53 114 aa9.54□□□□□ -0.88
CDH3-204ENST00000565453 IGLV7-43P04211 117 aa9.54□□□□□ -0.88
CDH3-204ENST00000565453 IFITM2Q01629 132 aa9.54□□□□□ -0.88
CDH3-204ENST00000565453 KIAA1644Q3SXP7 199 aa9.54□□□□□ -0.88
CDH3-204ENST00000565453 UQCC3Q6UW78 93 aa9.54□□□□□ -0.88
CDH3-204ENST00000565453 TRAV9-1A0A075B6T8 112 aa9.53□□□□□ -0.88
CDH3-204ENST00000565453 C9orf129Q5T035 196 aaKnown RBP9.53□□□□□ -0.88
CDH3-204ENST00000565453 TOMM6Q96B49 74 aa9.53□□□□□ -0.88
CDH3-204ENST00000565453 PACRGQ96M98 296 aaPredicted RBP9.53□□□□□ -0.88
CDH3-204ENST00000565453 TIMM17AQ99595 171 aa9.53□□□□□ -0.88
CDH3-204ENST00000565453 Q8IZM0 81 aa9.52□□□□□ -0.89
CDH3-204ENST00000565453 M0QXV9 152 aa9.51□□□□□ -0.89
CDH3-204ENST00000565453 G0S2P27469 103 aa9.51□□□□□ -0.89
CDH3-204ENST00000565453 HERVK_113P63121 156 aa9.51□□□□□ -0.89
CDH3-204ENST00000565453 TOMM7Q9P0U1 55 aa9.51□□□□□ -0.89
CDH3-204ENST00000565453 CDKN2A-AS1Q9UH64 79 aa9.51□□□□□ -0.89
CDH3-204ENST00000565453 PAPPA-AS1Q5QFB9 102 aa9.5□□□□□ -0.89
CDH3-204ENST00000565453 DIRC1Q969H9 104 aa9.5□□□□□ -0.89
CDH3-204ENST00000565453 LINC01546A6NGU7 62 aa9.49□□□□□ -0.89
CDH3-204ENST00000565453 PRSS2P07478 247 aa9.49□□□□□ -0.89
CDH3-204ENST00000565453 SEC11AP67812 179 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms