RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 Q6ZUT4 128 aa4.27□□□□□ -1.73
VPS4A-203ENST00000564399 LINC00173Q6ZV60 143 aa4.27□□□□□ -1.73
VPS4A-203ENST00000564399 CTDSP1Q9GZU7 261 aa4.27□□□□□ -1.73
VPS4A-203ENST00000564399 UBE2D4Q9Y2X8 147 aa4.27□□□□□ -1.73
VPS4A-203ENST00000564399 CSDC2Q9Y534 153 aaKnown RBP4.27□□□□□ -1.73
VPS4A-203ENST00000564399 VCYO14598 125 aa4.26□□□□□ -1.73
VPS4A-203ENST00000564399 NUPR1O60356 82 aa4.26□□□□□ -1.73
VPS4A-203ENST00000564399 RPL28P46779 137 aaKnown RBP4.26□□□□□ -1.73
VPS4A-203ENST00000564399 SRSF3P84103 164 aaKnown RBP4.26□□□□□ -1.73
VPS4A-203ENST00000564399 LINC00304Q8N9R0 145 aa4.26□□□□□ -1.73
VPS4A-203ENST00000564399 ANAPC11Q9NYG5 84 aa4.26□□□□□ -1.73
VPS4A-203ENST00000564399 IGHV3OR16-9A0A0B4J2B5 98 aa4.25□□□□□ -1.73
VPS4A-203ENST00000564399 NDUFC2-KCTD14E9PQ53 114 aa4.25□□□□□ -1.73
VPS4A-203ENST00000564399 PDE6DO43924 150 aa4.25□□□□□ -1.73
VPS4A-203ENST00000564399 C9orf129Q5T035 196 aaKnown RBP4.25□□□□□ -1.73
VPS4A-203ENST00000564399 TMEM18Q96B42 140 aa4.25□□□□□ -1.73
VPS4A-203ENST00000564399 BORCS7Q96B45 105 aa4.25□□□□□ -1.73
VPS4A-203ENST00000564399 PACRGQ96M98 296 aaPredicted RBP4.25□□□□□ -1.73
VPS4A-203ENST00000564399 KIR2DL4Q99706 377 aa4.25□□□□□ -1.73
VPS4A-203ENST00000564399 TRBV30A0A0K0K1B3 111 aa4.24□□□□□ -1.73
VPS4A-203ENST00000564399 TEX46H3BTG2 121 aa4.24□□□□□ -1.73
VPS4A-203ENST00000564399 GATCO43716 136 aaKnown RBP4.24□□□□□ -1.73
VPS4A-203ENST00000564399 KRTAP13-2Q52LG2 175 aa4.24□□□□□ -1.73
VPS4A-203ENST00000564399 LBHQ53QV2 105 aaPredicted RBP4.24□□□□□ -1.73
VPS4A-203ENST00000564399 C2orf82Q6UX34 121 aa4.24□□□□□ -1.73
VPS4A-203ENST00000564399 TIMM21Q9BVV7 248 aa4.24□□□□□ -1.73
VPS4A-203ENST00000564399 PPDPFQ9H3Y8 114 aa4.24□□□□□ -1.73
VPS4A-203ENST00000564399 C22orf24Q9Y442 160 aa4.24□□□□□ -1.73
VPS4A-203ENST00000564399 MUC17Q685J3 4493 aa4.23□□□□□ -1.73
VPS4A-203ENST00000564399 TGIF2-C20orf24A0A0A6YYL0 155 aa4.23□□□□□ -1.73
VPS4A-203ENST00000564399 A8MWL6 223 aa4.23□□□□□ -1.73
VPS4A-203ENST00000564399 SMKR1H3BMG3 65 aa4.23□□□□□ -1.73
VPS4A-203ENST00000564399 K7EN84 100 aa4.23□□□□□ -1.73
VPS4A-203ENST00000564399 RAB4AP20338 218 aa4.23□□□□□ -1.73
VPS4A-203ENST00000564399 LINC00337Q8N6G1 96 aa4.23□□□□□ -1.73
VPS4A-203ENST00000564399 LINC00469Q8N7U9 141 aa4.23□□□□□ -1.73
VPS4A-203ENST00000564399 OCC1Q8TAD7 63 aa4.23□□□□□ -1.73
VPS4A-203ENST00000564399 TMEM191AQ9H0A3 160 aa4.23□□□□□ -1.73
VPS4A-203ENST00000564399 IGKV2D-26A0A0A0MRZ7 120 aa4.22□□□□□ -1.73
VPS4A-203ENST00000564399 KANTRA0A1W2PQU2 76 aa4.22□□□□□ -1.73
VPS4A-203ENST00000564399 IFITM10A6NMD0 228 aa4.22□□□□□ -1.73
VPS4A-203ENST00000564399 SMLR1H3BR10 107 aa4.22□□□□□ -1.73
VPS4A-203ENST00000564399 BCE1O60756 84 aa4.22□□□□□ -1.73
VPS4A-203ENST00000564399 PPP1R17O96001 155 aa4.22□□□□□ -1.73
VPS4A-203ENST00000564399 SUMO2P61956 95 aaKnown RBP4.22□□□□□ -1.73
VPS4A-203ENST00000564399 HBBP68871 147 aa4.22□□□□□ -1.73
VPS4A-203ENST00000564399 KIAA0087Q14695 138 aa4.22□□□□□ -1.73
VPS4A-203ENST00000564399 LINC00242Q5T6M2 205 aa4.22□□□□□ -1.73
VPS4A-203ENST00000564399 AMN1Q8IY45 258 aa4.22□□□□□ -1.73
VPS4A-203ENST00000564399 A0A1B0GUT8 65 aa4.21□□□□□ -1.74
VPS4A-203ENST00000564399 ZNF727A8MUV8 499 aa4.21□□□□□ -1.74
VPS4A-203ENST00000564399 RPL39P62891 51 aaKnown RBP4.21□□□□□ -1.74
VPS4A-203ENST00000564399 ZNF345Q14585 488 aa4.21□□□□□ -1.74
VPS4A-203ENST00000564399 XAGE1AQ9HD64 81 aa4.21□□□□□ -1.74
VPS4A-203ENST00000564399 TMEM238LA0A1B0GVL6 79 aa4.2□□□□□ -1.74
VPS4A-203ENST00000564399 RPL37AP8A6NKH3 93 aa4.2□□□□□ -1.74
VPS4A-203ENST00000564399 PPP1R2P9O14990 202 aa4.2□□□□□ -1.74
VPS4A-203ENST00000564399 UBE2AP49459 152 aa4.2□□□□□ -1.74
VPS4A-203ENST00000564399 ASB16-AS1Q495Z4 193 aa4.2□□□□□ -1.74
VPS4A-203ENST00000564399 FAM229BQ4G0N7 80 aa4.2□□□□□ -1.74
VPS4A-203ENST00000564399 MRPL55Q7Z7F7 128 aaKnown RBP4.2□□□□□ -1.74
VPS4A-203ENST00000564399 SPANXA1Q9NS26 97 aa4.2□□□□□ -1.74
VPS4A-203ENST00000564399 HIGD1CA8MV81 97 aa4.19□□□□□ -1.74
VPS4A-203ENST00000564399 PRSS2P07478 247 aa4.19□□□□□ -1.74
VPS4A-203ENST00000564399 CKS1BP61024 79 aa4.19□□□□□ -1.74
VPS4A-203ENST00000564399 MRPS36P82909 103 aaKnown RBP4.19□□□□□ -1.74
VPS4A-203ENST00000564399 FAM231DQ6ZW35 169 aa4.19□□□□□ -1.74
VPS4A-203ENST00000564399 NRACQ8N912 160 aa4.19□□□□□ -1.74
VPS4A-203ENST00000564399 FAM104AQ969W3 186 aa4.19□□□□□ -1.74
VPS4A-203ENST00000564399 KRTAP4-1Q9BYQ7 146 aa4.19□□□□□ -1.74
VPS4A-203ENST00000564399 TOMM7Q9P0U1 55 aa4.19□□□□□ -1.74
VPS4A-203ENST00000564399 TP73-AS1Q9UF72 201 aa4.19□□□□□ -1.74
VPS4A-203ENST00000564399 GAGE10A6NGK3 116 aa4.18□□□□□ -1.74
VPS4A-203ENST00000564399 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.18□□□□□ -1.74
VPS4A-203ENST00000564399 TCAPO15273 167 aa4.18□□□□□ -1.74
VPS4A-203ENST00000564399 SEC61BP60468 96 aaKnown RBP4.18□□□□□ -1.74
VPS4A-203ENST00000564399 CTAG1AP78358 180 aa4.18□□□□□ -1.74
VPS4A-203ENST00000564399 RIGQ13278 110 aa4.18□□□□□ -1.74
VPS4A-203ENST00000564399 CT83Q5H943 113 aa4.18□□□□□ -1.74
VPS4A-203ENST00000564399 LINC00167Q96N53 147 aa4.18□□□□□ -1.74
VPS4A-203ENST00000564399 HMSDA8MTL9 139 aa4.17□□□□□ -1.74
VPS4A-203ENST00000564399 TAGLN2P37802 199 aaKnown RBP4.17□□□□□ -1.74
VPS4A-203ENST00000564399 C6orf226Q5I0X4 101 aa4.17□□□□□ -1.74
VPS4A-203ENST00000564399 FP248Q71RG6 208 aaPredicted RBP4.17□□□□□ -1.74
VPS4A-203ENST00000564399 C20orf78Q9BR46 151 aa4.17□□□□□ -1.74
VPS4A-203ENST00000564399 CKS2P33552 79 aa4.16□□□□□ -1.74
VPS4A-203ENST00000564399 IFI27P40305 119 aaPredicted RBP4.16□□□□□ -1.74
VPS4A-203ENST00000564399 CEBPGP53567 150 aa4.16□□□□□ -1.74
VPS4A-203ENST00000564399 RPL32P62910 135 aaKnown RBP4.16□□□□□ -1.74
VPS4A-203ENST00000564399 KRTAP13-3Q3SY46 172 aa4.16□□□□□ -1.74
VPS4A-203ENST00000564399 MRPL51Q4U2R6 128 aaKnown RBP4.16□□□□□ -1.74
VPS4A-203ENST00000564399 SMIM2Q9BVW6 85 aa4.16□□□□□ -1.74
VPS4A-203ENST00000564399 LINC00862A6NCI5 91 aa4.15□□□□□ -1.75
VPS4A-203ENST00000564399 TNFRSF6BO95407 300 aa4.15□□□□□ -1.75
VPS4A-203ENST00000564399 FAM104BQ5XKR9 115 aa4.15□□□□□ -1.75
VPS4A-203ENST00000564399 SPAG11AQ6PDA7 123 aa4.15□□□□□ -1.75
VPS4A-203ENST00000564399 Q6ZN92 141 aa4.15□□□□□ -1.75
VPS4A-203ENST00000564399 KRTAP13-1Q8IUC0 172 aa4.15□□□□□ -1.75
VPS4A-203ENST00000564399 LINC01561Q8N1V8 128 aa4.15□□□□□ -1.75
VPS4A-203ENST00000564399 C3orf22Q8N5N4 141 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms