RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 XCL1P47992 114 aa8.66□□□□□ -1.02
CLK3-214ENST00000564096 PYY3Q5JQD4 70 aa8.66□□□□□ -1.02
CLK3-214ENST00000564096 TMEM170BQ5T4T1 132 aa8.66□□□□□ -1.02
CLK3-214ENST00000564096 LINC00242Q5T6M2 205 aa8.66□□□□□ -1.02
CLK3-214ENST00000564096 ENHOQ6UWT2 76 aa8.66□□□□□ -1.02
CLK3-214ENST00000564096 CHCHD10Q8WYQ3 142 aaPredicted RBP8.66□□□□□ -1.02
CLK3-214ENST00000564096 IGLV10-54A0A075B6I4 117 aa8.65□□□□□ -1.02
CLK3-214ENST00000564096 NBDYA0A0U1RRE5 68 aa8.65□□□□□ -1.02
CLK3-214ENST00000564096 CD164L2Q6UWJ8 174 aa8.65□□□□□ -1.02
CLK3-214ENST00000564096 COX11Q9Y6N1 276 aa8.65□□□□□ -1.02
CLK3-214ENST00000564096 IGLV5-45A0A087WSX0 123 aa8.64□□□□□ -1.03
CLK3-214ENST00000564096 ZNF22P17026 224 aaPredicted RBP8.64□□□□□ -1.03
CLK3-214ENST00000564096 ATOH7Q8N100 152 aa8.64□□□□□ -1.03
CLK3-214ENST00000564096 Q9HAA7 133 aa8.64□□□□□ -1.03
CLK3-214ENST00000564096 PLECQ15149 4684 aaKnown RBP8.63□□□□□ -1.03
CLK3-214ENST00000564096 IGKV2D-24A0A075B6R9 120 aa8.63□□□□□ -1.03
CLK3-214ENST00000564096 S100A12P80511 92 aa8.63□□□□□ -1.03
CLK3-214ENST00000564096 VAMP8Q9BV40 100 aa8.63□□□□□ -1.03
CLK3-214ENST00000564096 TM2D2Q9BX73 214 aa8.63□□□□□ -1.03
CLK3-214ENST00000564096 GAGE12HA6NDE8 117 aa8.62□□□□□ -1.03
CLK3-214ENST00000564096 COX7A2LO14548 114 aa8.62□□□□□ -1.03
CLK3-214ENST00000564096 MALP21145 153 aa8.62□□□□□ -1.03
CLK3-214ENST00000564096 CSMD3Q7Z407 3707 aa8.61□□□□□ -1.03
CLK3-214ENST00000564096 IGHV3OR16-9A0A0B4J2B5 98 aa8.61□□□□□ -1.03
CLK3-214ENST00000564096 APOMO95445 188 aa8.61□□□□□ -1.03
CLK3-214ENST00000564096 LINC01561Q8N1V8 128 aa8.61□□□□□ -1.03
CLK3-214ENST00000564096 CDKN2A-AS1Q9UH64 79 aa8.61□□□□□ -1.03
CLK3-214ENST00000564096 A0A087WZ39 114 aa8.6□□□□□ -1.03
CLK3-214ENST00000564096 FOXI1Q12951 378 aa8.6□□□□□ -1.03
CLK3-214ENST00000564096 KRTAP1-5Q9BYS1 174 aa8.6□□□□□ -1.03
CLK3-214ENST00000564096 TMEM223A0PJW6 202 aa8.59□□□□□ -1.03
CLK3-214ENST00000564096 PSCAO43653 123 aa8.59□□□□□ -1.03
CLK3-214ENST00000564096 COX6A2Q02221 97 aa8.59□□□□□ -1.03
CLK3-214ENST00000564096 C5orf38Q86SI9 138 aa8.59□□□□□ -1.03
CLK3-214ENST00000564096 IGHV1-58A0A0C4DH39 117 aa8.58□□□□□ -1.04
CLK3-214ENST00000564096 hDV102S1A0JD36 115 aa8.58□□□□□ -1.04
CLK3-214ENST00000564096 SMIM1B2RUZ4 78 aa8.58□□□□□ -1.04
CLK3-214ENST00000564096 SPINK8P0C7L1 97 aa8.58□□□□□ -1.04
CLK3-214ENST00000564096 PLEKHB2Q96CS7 222 aa8.58□□□□□ -1.04
CLK3-214ENST00000564096 PAM16Q9Y3D7 125 aa8.58□□□□□ -1.04
CLK3-214ENST00000564096 A6NJY4 79 aa8.57□□□□□ -1.04
CLK3-214ENST00000564096 E9PLD3 99 aa8.57□□□□□ -1.04
CLK3-214ENST00000564096 SPATA45Q537H7 98 aa8.57□□□□□ -1.04
CLK3-214ENST00000564096 CFAP161Q6P656 301 aa8.57□□□□□ -1.04
CLK3-214ENST00000564096 STPG4Q8N801 248 aa8.57□□□□□ -1.04
CLK3-214ENST00000564096 C12orf57Q99622 126 aa8.57□□□□□ -1.04
CLK3-214ENST00000564096 ALMS1Q8TCU4 4167 aa8.57□□□□□ -1.04
CLK3-214ENST00000564096 IGHV3-64A0A075B6Q5 118 aa8.56□□□□□ -1.04
CLK3-214ENST00000564096 M0R2N4 97 aa8.56□□□□□ -1.04
CLK3-214ENST00000564096 PRSS2P07478 247 aa8.56□□□□□ -1.04
CLK3-214ENST00000564096 LGALS3P17931 250 aaKnown RBP8.56□□□□□ -1.04
CLK3-214ENST00000564096 NMUP48645 174 aa8.56□□□□□ -1.04
CLK3-214ENST00000564096 Q6ZR54 194 aa8.56□□□□□ -1.04
CLK3-214ENST00000564096 C6orf223Q8N319 242 aa8.56□□□□□ -1.04
CLK3-214ENST00000564096 IGLV5-39A0A0G2JS06 123 aa8.55□□□□□ -1.04
CLK3-214ENST00000564096 LEPROTO15243 131 aa8.55□□□□□ -1.04
CLK3-214ENST00000564096 SMCPP49901 116 aaPredicted RBP8.55□□□□□ -1.04
CLK3-214ENST00000564096 MAJINQ3KP22 176 aa8.55□□□□□ -1.04
CLK3-214ENST00000564096 ANKRD39Q53RE8 183 aa8.55□□□□□ -1.04
CLK3-214ENST00000564096 CDPF1Q6NVV7 123 aa8.55□□□□□ -1.04
CLK3-214ENST00000564096 SFTA2Q6UW10 78 aa8.55□□□□□ -1.04
CLK3-214ENST00000564096 ORAOV1Q8WV07 137 aa8.55□□□□□ -1.04
CLK3-214ENST00000564096 KMT2CQ8NEZ4 4911 aaKnown RBP8.54□□□□□ -1.04
CLK3-214ENST00000564096 LCE6AA0A183 80 aa8.54□□□□□ -1.04
CLK3-214ENST00000564096 CXCL5P42830 114 aa8.54□□□□□ -1.04
CLK3-214ENST00000564096 SPAG11BQ08648 103 aa8.54□□□□□ -1.04
CLK3-214ENST00000564096 KRTAP26-1Q6PEX3 210 aa8.54□□□□□ -1.04
CLK3-214ENST00000564096 TOMM7Q9P0U1 55 aa8.54□□□□□ -1.04
CLK3-214ENST00000564096 J3QQQ9 107 aa8.53□□□□□ -1.04
CLK3-214ENST00000564096 C1orf134Q5TEV5 83 aa8.53□□□□□ -1.04
CLK3-214ENST00000564096 Q8IZM0 81 aa8.53□□□□□ -1.04
CLK3-214ENST00000564096 LINC00518Q8N0U6 118 aa8.53□□□□□ -1.04
CLK3-214ENST00000564096 COX7B2Q8TF08 81 aa8.53□□□□□ -1.04
CLK3-214ENST00000564096 ZNF561-AS1K7EIQ3 104 aa8.52□□□□□ -1.05
CLK3-214ENST00000564096 C14orf177Q52M58 125 aa8.52□□□□□ -1.05
CLK3-214ENST00000564096 LINC00528Q8N1L1 170 aa8.52□□□□□ -1.05
CLK3-214ENST00000564096 VPS13DQ5THJ4 4388 aa8.52□□□□□ -1.05
CLK3-214ENST00000564096 CKS1BP61024 79 aa8.51□□□□□ -1.05
CLK3-214ENST00000564096 TENM2Q9NT68 2774 aa8.51□□□□□ -1.05
CLK3-214ENST00000564096 LYSTQ99698 3801 aa8.5□□□□□ -1.05
CLK3-214ENST00000564096 GVQW2A0A096LPI5 108 aaPredicted RBP8.5□□□□□ -1.05
CLK3-214ENST00000564096 IGKV2D-26A0A0A0MRZ7 120 aa8.5□□□□□ -1.05
CLK3-214ENST00000564096 MYMXA0A1B0GTQ4 84 aa8.5□□□□□ -1.05
CLK3-214ENST00000564096 ZNF815PA8K554 130 aa8.5□□□□□ -1.05
CLK3-214ENST00000564096 USP17L23D6RBM5 183 aa8.5□□□□□ -1.05
CLK3-214ENST00000564096 TSTD3H0UI37 97 aa8.5□□□□□ -1.05
CLK3-214ENST00000564096 C6orf226Q5I0X4 101 aa8.5□□□□□ -1.05
CLK3-214ENST00000564096 C15orf56Q8N910 161 aa8.5□□□□□ -1.05
CLK3-214ENST00000564096 NDUFA12Q9UI09 145 aa8.5□□□□□ -1.05
CLK3-214ENST00000564096 RYR3Q15413 4870 aa8.49□□□□□ -1.05
CLK3-214ENST00000564096 F8WDY8 70 aa8.49□□□□□ -1.05
CLK3-214ENST00000564096 NDUFA1O15239 70 aa8.49□□□□□ -1.05
CLK3-214ENST00000564096 COX8AP10176 69 aa8.49□□□□□ -1.05
CLK3-214ENST00000564096 TSPEAR-AS2P59090 65 aa8.49□□□□□ -1.05
CLK3-214ENST00000564096 HIGD2BQ4VC39 106 aa8.49□□□□□ -1.05
CLK3-214ENST00000564096 SLC25A34Q6PIV7 304 aa8.49□□□□□ -1.05
CLK3-214ENST00000564096 Q6ZRN7 208 aaPredicted RBP8.49□□□□□ -1.05
CLK3-214ENST00000564096 DNAH1Q9P2D7 4330 aa8.49□□□□□ -1.05
CLK3-214ENST00000564096 HERV-K104P63124 156 aa8.48□□□□□ -1.05
CLK3-214ENST00000564096 SCGB1D4Q6XE38 83 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms