RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 F8WDY8 70 aa10.66□□□□□ -0.7
VPS9D1-203ENST00000563798 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.66□□□□□ -0.7
VPS9D1-203ENST00000563798 GAGE2BQ13066 116 aa10.66□□□□□ -0.7
VPS9D1-203ENST00000563798 A0A1W2PNN7 141 aa10.65□□□□□ -0.7
VPS9D1-203ENST00000563798 D6R8Y8 96 aa10.65□□□□□ -0.7
VPS9D1-203ENST00000563798 KRTAP10-8P60410 259 aa10.65□□□□□ -0.7
VPS9D1-203ENST00000563798 RPL39P62891 51 aaKnown RBP10.65□□□□□ -0.7
VPS9D1-203ENST00000563798 REG3GQ6UW15 175 aa10.65□□□□□ -0.7
VPS9D1-203ENST00000563798 NPYP01303 97 aa10.64□□□□□ -0.71
VPS9D1-203ENST00000563798 MRPL54Q6P161 138 aaKnown RBP10.64□□□□□ -0.71
VPS9D1-203ENST00000563798 SPAG11BQ08648 103 aa10.63□□□□□ -0.71
VPS9D1-203ENST00000563798 ATP5L2Q7Z4Y8 100 aa10.63□□□□□ -0.71
VPS9D1-203ENST00000563798 MRPL35Q9NZE8 188 aaKnown RBP10.63□□□□□ -0.71
VPS9D1-203ENST00000563798 C9orf116Q5BN46 136 aaPredicted RBP10.62□□□□□ -0.71
VPS9D1-203ENST00000563798 PRSS47A8MTI9 375 aa10.61□□□□□ -0.71
VPS9D1-203ENST00000563798 OPRPNQ99935 248 aaPredicted RBP10.61□□□□□ -0.71
VPS9D1-203ENST00000563798 PYGO1Q9Y3Y4 419 aa10.61□□□□□ -0.71
VPS9D1-203ENST00000563798 ORMDL3Q8N138 153 aa10.6□□□□□ -0.71
VPS9D1-203ENST00000563798 ORAOV1Q8WV07 137 aa10.6□□□□□ -0.71
VPS9D1-203ENST00000563798 TLX1NBP0CAT3 122 aa10.59□□□□□ -0.71
VPS9D1-203ENST00000563798 RPL18AQ02543 176 aaKnown RBP10.59□□□□□ -0.71
VPS9D1-203ENST00000563798 TMEM136Q6ZRR5 245 aa10.59□□□□□ -0.71
VPS9D1-203ENST00000563798 IMMP2LQ96T52 175 aa10.59□□□□□ -0.71
VPS9D1-203ENST00000563798 LRP2P98164 4655 aa10.58□□□□□ -0.72
VPS9D1-203ENST00000563798 IFITM10A6NMD0 228 aa10.58□□□□□ -0.72
VPS9D1-203ENST00000563798 PRELID3AQ96N28 172 aa10.58□□□□□ -0.72
VPS9D1-203ENST00000563798 PSORS1C2Q9UIG4 136 aa10.58□□□□□ -0.72
VPS9D1-203ENST00000563798 A0A087WZ39 114 aa10.57□□□□□ -0.72
VPS9D1-203ENST00000563798 NDUFA1O15239 70 aa10.57□□□□□ -0.72
VPS9D1-203ENST00000563798 RAB5AP20339 215 aa10.57□□□□□ -0.72
VPS9D1-203ENST00000563798 IFI27P40305 119 aaPredicted RBP10.57□□□□□ -0.72
VPS9D1-203ENST00000563798 LAMTOR2Q9Y2Q5 125 aa10.57□□□□□ -0.72
VPS9D1-203ENST00000563798 KIAA0087Q14695 138 aa10.56□□□□□ -0.72
VPS9D1-203ENST00000563798 C10orf25Q5T742 122 aa10.56□□□□□ -0.72
VPS9D1-203ENST00000563798 IGLV4-3A0A075B6K6 122 aa10.55□□□□□ -0.72
VPS9D1-203ENST00000563798 PNRC1Q12796 327 aaPredicted RBP10.55□□□□□ -0.72
VPS9D1-203ENST00000563798 LINC00242Q5T6M2 205 aa10.55□□□□□ -0.72
VPS9D1-203ENST00000563798 C6orf48Q9UBA6 75 aa10.55□□□□□ -0.72
VPS9D1-203ENST00000563798 TGIF2-C20orf24A0A0A6YYL0 155 aa10.54□□□□□ -0.72
VPS9D1-203ENST00000563798 MT-ND6P03923 174 aa10.54□□□□□ -0.72
VPS9D1-203ENST00000563798 UNQ6190/PRO20217Q6UXQ8 127 aa10.54□□□□□ -0.72
VPS9D1-203ENST00000563798 PHF5AQ7RTV0 110 aaKnown RBP10.54□□□□□ -0.72
VPS9D1-203ENST00000563798 LINC01561Q8N1V8 128 aa10.54□□□□□ -0.72
VPS9D1-203ENST00000563798 ODF1Q14990 250 aa10.53□□□□□ -0.72
VPS9D1-203ENST00000563798 TMEM141Q96I45 108 aa10.53□□□□□ -0.72
VPS9D1-203ENST00000563798 ANAPC16Q96DE5 110 aa10.52□□□□□ -0.73
VPS9D1-203ENST00000563798 TRBV30A0A0K0K1B3 111 aa10.51□□□□□ -0.73
VPS9D1-203ENST00000563798 K7EMI3 77 aa10.51□□□□□ -0.73
VPS9D1-203ENST00000563798 NPSP0C0P6 89 aa10.51□□□□□ -0.73
VPS9D1-203ENST00000563798 UBE2D1P51668 147 aa10.51□□□□□ -0.73
VPS9D1-203ENST00000563798 C1orf137Q5JT78 98 aa10.51□□□□□ -0.73
VPS9D1-203ENST00000563798 Q8N8P6 123 aa10.51□□□□□ -0.73
VPS9D1-203ENST00000563798 MAP1LC3AQ9H492 121 aa10.51□□□□□ -0.73
VPS9D1-203ENST00000563798 MT-ND4LP03901 98 aa10.5□□□□□ -0.73
VPS9D1-203ENST00000563798 TEX43Q6ZNM6 134 aa10.5□□□□□ -0.73
VPS9D1-203ENST00000563798 AMELXQ99217 191 aa10.5□□□□□ -0.73
VPS9D1-203ENST00000563798 FAM168BA1KXE4 195 aa10.49□□□□□ -0.73
VPS9D1-203ENST00000563798 IGLV7-43P04211 117 aa10.49□□□□□ -0.73
VPS9D1-203ENST00000563798 LINC00173Q6ZV60 143 aa10.49□□□□□ -0.73
VPS9D1-203ENST00000563798 FAM19A3Q7Z5A8 133 aa10.49□□□□□ -0.73
VPS9D1-203ENST00000563798 KRTAP7-1Q8IUC3 87 aa10.49□□□□□ -0.73
VPS9D1-203ENST00000563798 CYSLTR1Q9Y271 337 aa10.49□□□□□ -0.73
VPS9D1-203ENST00000563798 LOC389332A0A1B0GUA5 103 aa10.48□□□□□ -0.73
VPS9D1-203ENST00000563798 C2orf66Q6UXQ4 117 aa10.48□□□□□ -0.73
VPS9D1-203ENST00000563798 KRTAP11-1Q8IUC1 163 aa10.48□□□□□ -0.73
VPS9D1-203ENST00000563798 IGIPA6NJ69 53 aa10.47□□□□□ -0.73
VPS9D1-203ENST00000563798 NDUFC2-KCTD14E9PQ53 114 aa10.47□□□□□ -0.73
VPS9D1-203ENST00000563798 ORMDL2Q53FV1 153 aa10.47□□□□□ -0.73
VPS9D1-203ENST00000563798 DIRC1Q969H9 104 aa10.47□□□□□ -0.73
VPS9D1-203ENST00000563798 C2orf88Q9BSF0 95 aa10.47□□□□□ -0.73
VPS9D1-203ENST00000563798 RNF213Q63HN8 5207 aa10.47□□□□□ -0.73
VPS9D1-203ENST00000563798 GAGE2EQ4V326 116 aa10.46□□□□□ -0.73
VPS9D1-203ENST00000563798 C2orf82Q6UX34 121 aa10.46□□□□□ -0.73
VPS9D1-203ENST00000563798 Q6ZN92 141 aa10.46□□□□□ -0.73
VPS9D1-203ENST00000563798 VCX2Q9H322 139 aa10.46□□□□□ -0.73
VPS9D1-203ENST00000563798 GAGE2DQ9UEU5 116 aa10.46□□□□□ -0.73
VPS9D1-203ENST00000563798 FAM19A5Q7Z5A7 132 aaPredicted RBP10.45□□□□□ -0.74
VPS9D1-203ENST00000563798 NXT2Q9NPJ8 142 aaKnown RBP10.45□□□□□ -0.74
VPS9D1-203ENST00000563798 H0Y9J4 135 aa10.44□□□□□ -0.74
VPS9D1-203ENST00000563798 RAB14P61106 215 aa10.44□□□□□ -0.74
VPS9D1-203ENST00000563798 PACRGQ96M98 296 aaPredicted RBP10.44□□□□□ -0.74
VPS9D1-203ENST00000563798 G0S2P27469 103 aa10.43□□□□□ -0.74
VPS9D1-203ENST00000563798 C9orf129Q5T035 196 aaKnown RBP10.43□□□□□ -0.74
VPS9D1-203ENST00000563798 ZC2HC1BQ5TFG8 222 aa10.43□□□□□ -0.74
VPS9D1-203ENST00000563798 M0QXV9 152 aa10.42□□□□□ -0.74
VPS9D1-203ENST00000563798 Q8IZM0 81 aa10.42□□□□□ -0.74
VPS9D1-203ENST00000563798 SEC11AP67812 179 aa10.41□□□□□ -0.74
VPS9D1-203ENST00000563798 PAPPA-AS1Q5QFB9 102 aa10.41□□□□□ -0.74
VPS9D1-203ENST00000563798 TIMM17AQ99595 171 aa10.41□□□□□ -0.74
VPS9D1-203ENST00000563798 CTDSP1Q9GZU7 261 aa10.41□□□□□ -0.74
VPS9D1-203ENST00000563798 PRSS2P07478 247 aa10.4□□□□□ -0.74
VPS9D1-203ENST00000563798 HERVK_113P63121 156 aa10.4□□□□□ -0.74
VPS9D1-203ENST00000563798 IGLV1-50A0A075B6I6 118 aa10.39□□□□□ -0.75
VPS9D1-203ENST00000563798 KRTAP1-4P0C5Y4 121 aa10.39□□□□□ -0.75
VPS9D1-203ENST00000563798 CKS1BP61024 79 aa10.39□□□□□ -0.75
VPS9D1-203ENST00000563798 C6orf226Q5I0X4 101 aa10.39□□□□□ -0.75
VPS9D1-203ENST00000563798 CLLU1Q5K131 121 aa10.39□□□□□ -0.75
VPS9D1-203ENST00000563798 PRR26Q8N8Z3 221 aa10.39□□□□□ -0.75
VPS9D1-203ENST00000563798 TOMM6Q96B49 74 aa10.39□□□□□ -0.75
VPS9D1-203ENST00000563798 TRAV9-1A0A075B6T8 112 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms