RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 STPG4Q8N801 248 aa9.42□□□□□ -0.9
CLK3-209ENST00000562670 CD164L2Q6UWJ8 174 aa9.41□□□□□ -0.9
CLK3-209ENST00000562670 ENHOQ6UWT2 76 aa9.41□□□□□ -0.9
CLK3-209ENST00000562670 CDKN2A-AS1Q9UH64 79 aa9.41□□□□□ -0.9
CLK3-209ENST00000562670 A0A087WZ39 114 aa9.4□□□□□ -0.9
CLK3-209ENST00000562670 TSTD3H0UI37 97 aa9.4□□□□□ -0.9
CLK3-209ENST00000562670 COX6A2Q02221 97 aa9.4□□□□□ -0.9
CLK3-209ENST00000562670 CLPSL2Q6UWE3 100 aa9.4□□□□□ -0.9
CLK3-209ENST00000562670 UBE2DNLQ8IWF7 75 aa9.4□□□□□ -0.9
CLK3-209ENST00000562670 Q9H8V8 135 aa9.4□□□□□ -0.9
CLK3-209ENST00000562670 IGKV3OR2-268A0A0C4DH90 116 aa9.39□□□□□ -0.91
CLK3-209ENST00000562670 IGLV5-39A0A0G2JS06 123 aa9.39□□□□□ -0.91
CLK3-209ENST00000562670 IBA57-AS1B1ANH7 110 aa9.39□□□□□ -0.91
CLK3-209ENST00000562670 C3orf84H3BNL1 204 aa9.39□□□□□ -0.91
CLK3-209ENST00000562670 ZFAND6Q6FIF0 208 aa9.39□□□□□ -0.91
CLK3-209ENST00000562670 CHCHD10Q8WYQ3 142 aaPredicted RBP9.39□□□□□ -0.91
CLK3-209ENST00000562670 TRAV8-3A0A0A6YYJ7 113 aa9.38□□□□□ -0.91
CLK3-209ENST00000562670 IGHV1-58A0A0C4DH39 117 aa9.38□□□□□ -0.91
CLK3-209ENST00000562670 SMIM1B2RUZ4 78 aa9.38□□□□□ -0.91
CLK3-209ENST00000562670 DLEU1O43261 78 aa9.38□□□□□ -0.91
CLK3-209ENST00000562670 COX8AP10176 69 aa9.38□□□□□ -0.91
CLK3-209ENST00000562670 UBE2WQ96B02 151 aa9.38□□□□□ -0.91
CLK3-209ENST00000562670 PLEKHB2Q96CS7 222 aa9.38□□□□□ -0.91
CLK3-209ENST00000562670 TGP01266 2768 aa9.37□□□□□ -0.91
CLK3-209ENST00000562670 IGKV2D-26A0A0A0MRZ7 120 aa9.37□□□□□ -0.91
CLK3-209ENST00000562670 LEPROTO15243 131 aa9.37□□□□□ -0.91
CLK3-209ENST00000562670 XCL1P47992 114 aa9.37□□□□□ -0.91
CLK3-209ENST00000562670 VPS13DQ5THJ4 4388 aa9.36□□□□□ -0.91
CLK3-209ENST00000562670 DNAH1Q9P2D7 4330 aa9.36□□□□□ -0.91
CLK3-209ENST00000562670 NMUP48645 174 aa9.36□□□□□ -0.91
CLK3-209ENST00000562670 FOXI1Q12951 378 aa9.36□□□□□ -0.91
CLK3-209ENST00000562670 TTC32Q5I0X7 151 aa9.36□□□□□ -0.91
CLK3-209ENST00000562670 BOD1L2Q8IYS8 172 aa9.36□□□□□ -0.91
CLK3-209ENST00000562670 LYSTQ99698 3801 aa9.36□□□□□ -0.91
CLK3-209ENST00000562670 UQCR10Q9UDW1 63 aa9.36□□□□□ -0.91
CLK3-209ENST00000562670 J3QQQ9 107 aa9.35□□□□□ -0.91
CLK3-209ENST00000562670 COX7A2LO14548 114 aa9.35□□□□□ -0.91
CLK3-209ENST00000562670 SPINK8P0C7L1 97 aa9.35□□□□□ -0.91
CLK3-209ENST00000562670 CASC10Q5T4H9 136 aa9.35□□□□□ -0.91
CLK3-209ENST00000562670 KRTAP26-1Q6PEX3 210 aa9.35□□□□□ -0.91
CLK3-209ENST00000562670 SLC25A34Q6PIV7 304 aa9.35□□□□□ -0.91
CLK3-209ENST00000562670 C1orf43Q9BWL3 253 aa9.35□□□□□ -0.91
CLK3-209ENST00000562670 RMI2Q96E14 147 aa9.34□□□□□ -0.91
CLK3-209ENST00000562670 MIEN1Q9BRT3 115 aa9.34□□□□□ -0.91
CLK3-209ENST00000562670 IGLV10-54A0A075B6I4 117 aa9.33□□□□□ -0.92
CLK3-209ENST00000562670 TSPEAR-AS2P59090 65 aa9.33□□□□□ -0.92
CLK3-209ENST00000562670 PCP2Q8IVA1 136 aa9.33□□□□□ -0.92
CLK3-209ENST00000562670 C14orf144Q96I85 54 aa9.33□□□□□ -0.92
CLK3-209ENST00000562670 PRO1933Q9H354 126 aa9.33□□□□□ -0.92
CLK3-209ENST00000562670 GAGE12HA6NDE8 117 aa9.32□□□□□ -0.92
CLK3-209ENST00000562670 LGALS3P17931 250 aaKnown RBP9.32□□□□□ -0.92
CLK3-209ENST00000562670 SFTA2Q6UW10 78 aa9.32□□□□□ -0.92
CLK3-209ENST00000562670 C5orf38Q86SI9 138 aa9.32□□□□□ -0.92
CLK3-209ENST00000562670 COX11Q9Y6N1 276 aa9.32□□□□□ -0.92
CLK3-209ENST00000562670 ALMS1Q8TCU4 4167 aa9.31□□□□□ -0.92
CLK3-209ENST00000562670 IGHV3-64A0A075B6Q5 118 aa9.31□□□□□ -0.92
CLK3-209ENST00000562670 MYMXA0A1B0GTQ4 84 aa9.31□□□□□ -0.92
CLK3-209ENST00000562670 APOMO95445 188 aa9.31□□□□□ -0.92
CLK3-209ENST00000562670 Q8IZM0 81 aa9.31□□□□□ -0.92
CLK3-209ENST00000562670 KRTAP1-5Q9BYS1 174 aa9.31□□□□□ -0.92
CLK3-209ENST00000562670 TENM2Q9NT68 2774 aa9.31□□□□□ -0.92
CLK3-209ENST00000562670 NBDYA0A0U1RRE5 68 aa9.3□□□□□ -0.92
CLK3-209ENST00000562670 NDUFA1O15239 70 aa9.3□□□□□ -0.92
CLK3-209ENST00000562670 DNAH6Q9C0G6 4158 aa9.3□□□□□ -0.92
CLK3-209ENST00000562670 IGKV2D-24A0A075B6R9 120 aa9.29□□□□□ -0.92
CLK3-209ENST00000562670 ZNF815PA8K554 130 aa9.29□□□□□ -0.92
CLK3-209ENST00000562670 MALP21145 153 aa9.29□□□□□ -0.92
CLK3-209ENST00000562670 DDTP30046 118 aa9.29□□□□□ -0.92
CLK3-209ENST00000562670 COX7B2Q8TF08 81 aa9.29□□□□□ -0.92
CLK3-209ENST00000562670 HIGD1BQ9P298 99 aa9.29□□□□□ -0.92
CLK3-209ENST00000562670 NDUFA12Q9UI09 145 aa9.29□□□□□ -0.92
CLK3-209ENST00000562670 CXCL5P42830 114 aa9.28□□□□□ -0.92
CLK3-209ENST00000562670 MAPKAPK5-AS1Q8N8E1 139 aa9.28□□□□□ -0.92
CLK3-209ENST00000562670 LINC00476Q8WZB0 136 aa9.28□□□□□ -0.92
CLK3-209ENST00000562670 ZNF625Q96I27 306 aaPredicted RBP9.28□□□□□ -0.92
CLK3-209ENST00000562670 TM2D2Q9BX73 214 aa9.28□□□□□ -0.92
CLK3-209ENST00000562670 TTTY13Q9BZ97 58 aa9.28□□□□□ -0.92
CLK3-209ENST00000562670 Q9HAA7 133 aa9.28□□□□□ -0.92
CLK3-209ENST00000562670 HNRNPA3P51991 378 aaKnown RBP9.27□□□□□ -0.93
CLK3-209ENST00000562670 HERV-K104P63124 156 aa9.27□□□□□ -0.93
CLK3-209ENST00000562670 C2orf91Q6ZV80 131 aa9.27□□□□□ -0.93
CLK3-209ENST00000562670 ORAOV1Q8WV07 137 aa9.27□□□□□ -0.93
CLK3-209ENST00000562670 KIAA0087Q14695 138 aa9.26□□□□□ -0.93
CLK3-209ENST00000562670 GVQW2A0A096LPI5 108 aaPredicted RBP9.25□□□□□ -0.93
CLK3-209ENST00000562670 F8WDY8 70 aa9.25□□□□□ -0.93
CLK3-209ENST00000562670 PRSS2P07478 247 aa9.25□□□□□ -0.93
CLK3-209ENST00000562670 CFAP161Q6P656 301 aa9.25□□□□□ -0.93
CLK3-209ENST00000562670 TP73-AS1Q9UF72 201 aa9.25□□□□□ -0.93
CLK3-209ENST00000562670 TIMM17BO60830 172 aa9.24□□□□□ -0.93
CLK3-209ENST00000562670 SPAG11BQ08648 103 aa9.24□□□□□ -0.93
CLK3-209ENST00000562670 Q6ZR54 194 aa9.24□□□□□ -0.93
CLK3-209ENST00000562670 C15orf56Q8N910 161 aa9.24□□□□□ -0.93
CLK3-209ENST00000562670 TOMM7Q9P0U1 55 aa9.24□□□□□ -0.93
CLK3-209ENST00000562670 A0A0J9YXY3 114 aa9.23□□□□□ -0.93
CLK3-209ENST00000562670 C6orf226Q5I0X4 101 aa9.23□□□□□ -0.93
CLK3-209ENST00000562670 SCGB1D4Q6XE38 83 aa9.23□□□□□ -0.93
CLK3-209ENST00000562670 SPANXB1Q9NS25 103 aaPredicted RBP9.23□□□□□ -0.93
CLK3-209ENST00000562670 LINC00587B1AMM8 73 aa9.22□□□□□ -0.93
CLK3-209ENST00000562670 C2orf48Q96LS8 159 aa9.22□□□□□ -0.93
CLK3-209ENST00000562670 PCP4L1A6NKN8 68 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms