RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 LOC107984640A0A0U1RRK4 108 aa9.69□□□□□ -0.86
CSPG4P11-201ENST00000560634 KPRPQ5T749 579 aaPredicted RBP9.69□□□□□ -0.86
CSPG4P11-201ENST00000560634 Q6ZS46 218 aa9.69□□□□□ -0.86
CSPG4P11-201ENST00000560634 PRR9Q5T870 116 aa9.68□□□□□ -0.86
CSPG4P11-201ENST00000560634 DSCAMO60469 2012 aa9.68□□□□□ -0.86
CSPG4P11-201ENST00000560634 NTM-AS1Q6ZSK4 140 aa9.68□□□□□ -0.86
CSPG4P11-201ENST00000560634 CDC42SE2Q9NRR3 84 aa9.68□□□□□ -0.86
CSPG4P11-201ENST00000560634 POM121L12Q8N7R1 296 aa9.68□□□□□ -0.86
CSPG4P11-201ENST00000560634 UBE2D3P61077 147 aa9.67□□□□□ -0.86
CSPG4P11-201ENST00000560634 UBE2D2P62837 147 aa9.67□□□□□ -0.86
CSPG4P11-201ENST00000560634 ZNF702PQ9H963 129 aa9.67□□□□□ -0.86
CSPG4P11-201ENST00000560634 IGIPA6NJ69 53 aa9.67□□□□□ -0.86
CSPG4P11-201ENST00000560634 IGLV1-40P01703 118 aa9.67□□□□□ -0.86
CSPG4P11-201ENST00000560634 C10orf99Q6UWK7 81 aa9.67□□□□□ -0.86
CSPG4P11-201ENST00000560634 PRO3102Q9H379 93 aa9.67□□□□□ -0.86
CSPG4P11-201ENST00000560634 SPINK6Q6UWN8 80 aa9.67□□□□□ -0.86
CSPG4P11-201ENST00000560634 PRRC2AP48634 2157 aaKnown RBP9.66□□□□□ -0.86
CSPG4P11-201ENST00000560634 TRAV7A0A075B6U4 112 aa9.66□□□□□ -0.86
CSPG4P11-201ENST00000560634 PPDPFQ9H3Y8 114 aa9.66□□□□□ -0.86
CSPG4P11-201ENST00000560634 LINC00474Q9P2X8 69 aa9.65□□□□□ -0.86
CSPG4P11-201ENST00000560634 ALPK3Q96L96 1907 aa9.65□□□□□ -0.86
CSPG4P11-201ENST00000560634 ADAMTS9Q9P2N4 1935 aa9.65□□□□□ -0.86
CSPG4P11-201ENST00000560634 LINC01006Q8NI28 216 aa9.65□□□□□ -0.86
CSPG4P11-201ENST00000560634 INAFM1C9JVW0 142 aa9.64□□□□□ -0.87
CSPG4P11-201ENST00000560634 CHCHD7Q9BUK0 85 aa9.64□□□□□ -0.87
CSPG4P11-201ENST00000560634 GOLGB1Q14789 3259 aaKnown RBP9.64□□□□□ -0.87
CSPG4P11-201ENST00000560634 LINC00526Q96FQ7 95 aa9.64□□□□□ -0.87
CSPG4P11-201ENST00000560634 A0A0J9YWU9 116 aa9.64□□□□□ -0.87
CSPG4P11-201ENST00000560634 LINC00242Q5T6M2 205 aa9.64□□□□□ -0.87
CSPG4P11-201ENST00000560634 LTBP2Q14767 1821 aa9.63□□□□□ -0.87
CSPG4P11-201ENST00000560634 LOC100131303A0A0U1RQF7 123 aa9.63□□□□□ -0.87
CSPG4P11-201ENST00000560634 CYSRT1A8MQ03 144 aa9.63□□□□□ -0.87
CSPG4P11-201ENST00000560634 EGFEM1PQ0D2K5 195 aa9.63□□□□□ -0.87
CSPG4P11-201ENST00000560634 PRR4Q16378 134 aa9.63□□□□□ -0.87
CSPG4P11-201ENST00000560634 RPL28P46779 137 aaKnown RBP9.63□□□□□ -0.87
CSPG4P11-201ENST00000560634 GAS8-AS1O95177 125 aa9.62□□□□□ -0.87
CSPG4P11-201ENST00000560634 TMEM131Q92545 1883 aa9.62□□□□□ -0.87
CSPG4P11-201ENST00000560634 LINC00694P0DN24 101 aa9.61□□□□□ -0.87
CSPG4P11-201ENST00000560634 CLUHP3Q96NS8 147 aa9.61□□□□□ -0.87
CSPG4P11-201ENST00000560634 C2orf16Q68DN1 1984 aa9.61□□□□□ -0.87
CSPG4P11-201ENST00000560634 KIF26AQ9ULI4 1882 aaPredicted RBP9.6□□□□□ -0.87
CSPG4P11-201ENST00000560634 KIAA1549Q9HCM3 1950 aa9.6□□□□□ -0.87
CSPG4P11-201ENST00000560634 LINC00310P59036 64 aa9.59□□□□□ -0.87
CSPG4P11-201ENST00000560634 PLAC8L1A1L4L8 177 aa9.59□□□□□ -0.87
CSPG4P11-201ENST00000560634 RPL37AP8A6NKH3 93 aa9.59□□□□□ -0.87
CSPG4P11-201ENST00000560634 SMIM1B2RUZ4 78 aa9.59□□□□□ -0.87
CSPG4P11-201ENST00000560634 Q8N814 137 aa9.59□□□□□ -0.87
CSPG4P11-201ENST00000560634 M0QXV9 152 aa9.58□□□□□ -0.88
CSPG4P11-201ENST00000560634 ARHGAP32A7KAX9 2087 aa9.58□□□□□ -0.88
CSPG4P11-201ENST00000560634 C10orf25Q5T742 122 aa9.58□□□□□ -0.88
CSPG4P11-201ENST00000560634 FAM30AQ9NZY2 134 aa9.58□□□□□ -0.88
CSPG4P11-201ENST00000560634 HRCT1Q6UXD1 115 aa9.57□□□□□ -0.88
CSPG4P11-201ENST00000560634 URB1-AS1Q96HZ7 61 aa9.57□□□□□ -0.88
CSPG4P11-201ENST00000560634 CSDC2Q9Y534 153 aaKnown RBP9.57□□□□□ -0.88
CSPG4P11-201ENST00000560634 C1orf137Q5JT78 98 aa9.57□□□□□ -0.88
CSPG4P11-201ENST00000560634 WFDC10AQ9H1F0 79 aa9.57□□□□□ -0.88
CSPG4P11-201ENST00000560634 UNQ6190/PRO20217Q6UXQ8 127 aa9.57□□□□□ -0.88
CSPG4P11-201ENST00000560634 COX8CQ7Z4L0 72 aa9.56□□□□□ -0.88
CSPG4P11-201ENST00000560634 IGLV2-18A0A075B6J9 118 aa9.56□□□□□ -0.88
CSPG4P11-201ENST00000560634 LINC00208Q96KT6 92 aa9.56□□□□□ -0.88
CSPG4P11-201ENST00000560634 IGLV9-49A0A0B4J1Y8 123 aa9.55□□□□□ -0.88
CSPG4P11-201ENST00000560634 CELA1Q9UNI1 258 aa9.55□□□□□ -0.88
CSPG4P11-201ENST00000560634 HCFC1P51610 2035 aa9.55□□□□□ -0.88
CSPG4P11-201ENST00000560634 NCOR2Q9Y618 2525 aa9.55□□□□□ -0.88
CSPG4P11-201ENST00000560634 ODF3L2Q3SX64 289 aa9.55□□□□□ -0.88
CSPG4P11-201ENST00000560634 TANC2Q9HCD6 1990 aa9.54□□□□□ -0.88
CSPG4P11-201ENST00000560634 LY6G6DO95868 133 aa9.54□□□□□ -0.88
CSPG4P11-201ENST00000560634 TRBV10-3A0A0K0K1G6 114 aa9.54□□□□□ -0.88
CSPG4P11-201ENST00000560634 PRM2P04554 102 aa9.54□□□□□ -0.88
CSPG4P11-201ENST00000560634 CRIP2P52943 208 aaPredicted RBP9.54□□□□□ -0.88
CSPG4P11-201ENST00000560634 PCNX3Q9H6A9 2034 aa9.54□□□□□ -0.88
CSPG4P11-201ENST00000560634 PMAIP1Q13794 54 aa9.53□□□□□ -0.88
CSPG4P11-201ENST00000560634 C18orf65Q6ZTR6 163 aa9.53□□□□□ -0.88
CSPG4P11-201ENST00000560634 AMELXQ99217 191 aa9.53□□□□□ -0.88
CSPG4P11-201ENST00000560634 F8WDY8 70 aa9.53□□□□□ -0.88
CSPG4P11-201ENST00000560634 PCDH15Q96QU1 1955 aa9.53□□□□□ -0.88
CSPG4P11-201ENST00000560634 BRI3O95415 125 aa9.52□□□□□ -0.88
CSPG4P11-201ENST00000560634 COL4A4P53420 1690 aaPredicted RBP9.52□□□□□ -0.89
CSPG4P11-201ENST00000560634 PRYO14603 147 aa9.51□□□□□ -0.89
CSPG4P11-201ENST00000560634 Q8N3U1 123 aa9.51□□□□□ -0.89
CSPG4P11-201ENST00000560634 Q6ZVQ6 151 aa9.51□□□□□ -0.89
CSPG4P11-201ENST00000560634 IGHV4-30-4P0DP06 118 aa9.5□□□□□ -0.89
CSPG4P11-201ENST00000560634 PIEZO2Q9H5I5 2752 aa9.5□□□□□ -0.89
CSPG4P11-201ENST00000560634 A0A087WVE0 104 aa9.5□□□□□ -0.89
CSPG4P11-201ENST00000560634 ZNF843Q8N446 348 aa9.5□□□□□ -0.89
CSPG4P11-201ENST00000560634 ZNF580Q9UK33 172 aa9.5□□□□□ -0.89
CSPG4P11-201ENST00000560634 REG3GQ6UW15 175 aa9.49□□□□□ -0.89
CSPG4P11-201ENST00000560634 M0R2N4 97 aa9.49□□□□□ -0.89
CSPG4P11-201ENST00000560634 ESRGQ1W209 222 aa9.49□□□□□ -0.89
CSPG4P11-201ENST00000560634 TSPEAR-AS2P59090 65 aa9.49□□□□□ -0.89
CSPG4P11-201ENST00000560634 ZNF106Q9H2Y7 1883 aaKnown RBP9.49□□□□□ -0.89
CSPG4P11-201ENST00000560634 IGLV1-51P01701 117 aa9.49□□□□□ -0.89
CSPG4P11-201ENST00000560634 NANOS2P60321 138 aaKnown RBP9.49□□□□□ -0.89
CSPG4P11-201ENST00000560634 JMJD1CQ15652 2540 aa9.48□□□□□ -0.89
CSPG4P11-201ENST00000560634 TRBV7-7A0A0K0K1E9 115 aa9.48□□□□□ -0.89
CSPG4P11-201ENST00000560634 TRBV7-6A0A0J9YX20 115 aa9.48□□□□□ -0.89
CSPG4P11-201ENST00000560634 IGF2RP11717 2491 aa9.48□□□□□ -0.89
CSPG4P11-201ENST00000560634 A0A087WYN8 130 aa9.48□□□□□ -0.89
CSPG4P11-201ENST00000560634 BEAN1Q3B7T3 259 aa9.48□□□□□ -0.89
CSPG4P11-201ENST00000560634 LINC01561Q8N1V8 128 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms