RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 Q8N814 137 aa14.01□□□□□ -0.17
CASC4-204ENST00000557945 CFAP161Q6P656 301 aa14□□□□□ -0.17
CASC4-204ENST00000557945 A0A0J9YXV3 536 aa13.99□□□□□ -0.17
CASC4-204ENST00000557945 A0A1B0GVY2 172 aa13.99□□□□□ -0.17
CASC4-204ENST00000557945 MALP21145 153 aa13.99□□□□□ -0.17
CASC4-204ENST00000557945 COX6A2Q02221 97 aa13.99□□□□□ -0.17
CASC4-204ENST00000557945 C14orf177Q52M58 125 aa13.99□□□□□ -0.17
CASC4-204ENST00000557945 GEMIN7Q9H840 131 aaKnown RBP13.99□□□□□ -0.17
CASC4-204ENST00000557945 HSPB8Q9UJY1 196 aa13.99□□□□□ -0.17
CASC4-204ENST00000557945 SEC11AP67812 179 aa13.98□□□□□ -0.17
CASC4-204ENST00000557945 SPATA12Q7Z6I5 190 aa13.98□□□□□ -0.17
CASC4-204ENST00000557945 IGHV3OR16-9A0A0B4J2B5 98 aa13.97□□□□□ -0.17
CASC4-204ENST00000557945 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.96□□□□□ -0.17
CASC4-204ENST00000557945 HERVK_113P63121 156 aa13.96□□□□□ -0.17
CASC4-204ENST00000557945 IGHV1-58A0A0C4DH39 117 aa13.96□□□□□ -0.18
CASC4-204ENST00000557945 hDV102S1A0JD36 115 aa13.96□□□□□ -0.18
CASC4-204ENST00000557945 H0Y8G0 127 aa13.96□□□□□ -0.18
CASC4-204ENST00000557945 FUSP35637 526 aaKnown RBP eCLIP13.96□□□□□ -0.18
CASC4-204ENST00000557945 KRTAP10-2P60368 255 aa13.96□□□□□ -0.18
CASC4-204ENST00000557945 HIGD2BQ4VC39 106 aa13.96□□□□□ -0.18
CASC4-204ENST00000557945 FAM19A3Q7Z5A8 133 aa13.96□□□□□ -0.18
CASC4-204ENST00000557945 C15orf56Q8N910 161 aa13.96□□□□□ -0.18
CASC4-204ENST00000557945 TINCRA0A1B0GVN0 87 aa13.95□□□□□ -0.18
CASC4-204ENST00000557945 APOMO95445 188 aa13.94□□□□□ -0.18
CASC4-204ENST00000557945 S100A6P06703 90 aa13.94□□□□□ -0.18
CASC4-204ENST00000557945 A0A087WZ39 114 aa13.93□□□□□ -0.18
CASC4-204ENST00000557945 LINC00469Q8N7U9 141 aa13.93□□□□□ -0.18
CASC4-204ENST00000557945 PGPEP1Q9NXJ5 209 aa13.93□□□□□ -0.18
CASC4-204ENST00000557945 CHTOPQ9Y3Y2 248 aaKnown RBP13.93□□□□□ -0.18
CASC4-204ENST00000557945 TRAV12-1A0A0B4J245 112 aa13.92□□□□□ -0.18
CASC4-204ENST00000557945 CDKN2A-AS1Q9UH64 79 aa13.92□□□□□ -0.18
CASC4-204ENST00000557945 IGLV5-52A0A0A0MRZ9 124 aa13.91□□□□□ -0.18
CASC4-204ENST00000557945 IGLC3P0DOY3 106 aa13.91□□□□□ -0.18
CASC4-204ENST00000557945 NTN5Q8WTR8 489 aaPredicted RBP13.91□□□□□ -0.18
CASC4-204ENST00000557945 PACRGQ96M98 296 aaPredicted RBP13.91□□□□□ -0.18
CASC4-204ENST00000557945 CHAC1Q9BUX1 264 aa13.91□□□□□ -0.18
CASC4-204ENST00000557945 MAP1LC3CQ9BXW4 147 aa13.91□□□□□ -0.18
CASC4-204ENST00000557945 DNAH11Q96DT5 4516 aa13.9□□□□□ -0.18
CASC4-204ENST00000557945 IGLV4-69A0A075B6H9 119 aa13.9□□□□□ -0.18
CASC4-204ENST00000557945 GVQW2A0A096LPI5 108 aaPredicted RBP13.9□□□□□ -0.18
CASC4-204ENST00000557945 PKD1P98161 4303 aa13.89□□□□□ -0.19
CASC4-204ENST00000557945 IGHV3-64A0A075B6Q5 118 aa13.89□□□□□ -0.19
CASC4-204ENST00000557945 ZNF561-AS1K7EIQ3 104 aa13.89□□□□□ -0.19
CASC4-204ENST00000557945 ORAOV1Q8WV07 137 aa13.89□□□□□ -0.19
CASC4-204ENST00000557945 MRPL35Q9NZE8 188 aaKnown RBP13.89□□□□□ -0.19
CASC4-204ENST00000557945 CDPF1Q6NVV7 123 aa13.88□□□□□ -0.19
CASC4-204ENST00000557945 LINC01561Q8N1V8 128 aa13.88□□□□□ -0.19
CASC4-204ENST00000557945 LINC00526Q96FQ7 95 aa13.88□□□□□ -0.19
CASC4-204ENST00000557945 IGLV5-45A0A087WSX0 123 aa13.87□□□□□ -0.19
CASC4-204ENST00000557945 F8VRH5 84 aa13.87□□□□□ -0.19
CASC4-204ENST00000557945 SPAG11BQ08648 103 aa13.87□□□□□ -0.19
CASC4-204ENST00000557945 C11orf86A6NJI1 115 aa13.86□□□□□ -0.19
CASC4-204ENST00000557945 C16orf90A8MZG2 172 aa13.86□□□□□ -0.19
CASC4-204ENST00000557945 S100A2P29034 98 aa13.86□□□□□ -0.19
CASC4-204ENST00000557945 ODF1Q14990 250 aa13.86□□□□□ -0.19
CASC4-204ENST00000557945 OR10D4PQ8NGN7 298 aa13.86□□□□□ -0.19
CASC4-204ENST00000557945 H3BRM9 83 aa13.85□□□□□ -0.19
CASC4-204ENST00000557945 HIST3H2BBQ8N257 126 aa13.85□□□□□ -0.19
CASC4-204ENST00000557945 ZNF22P17026 224 aaPredicted RBP13.84□□□□□ -0.19
CASC4-204ENST00000557945 SNRPEP62304 92 aaKnown RBP13.84□□□□□ -0.19
CASC4-204ENST00000557945 TMEM170BQ5T4T1 132 aa13.84□□□□□ -0.19
CASC4-204ENST00000557945 SYS1-DBNDD2H3BUS1 97 aa13.83□□□□□ -0.19
CASC4-204ENST00000557945 SLPIP03973 132 aa13.83□□□□□ -0.19
CASC4-204ENST00000557945 SPINK8P0C7L1 97 aa13.83□□□□□ -0.19
CASC4-204ENST00000557945 PMCHL2Q9BQD1 86 aa13.83□□□□□ -0.19
CASC4-204ENST00000557945 HECTD4Q9Y4D8 3996 aa13.83□□□□□ -0.2
CASC4-204ENST00000557945 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.83□□□□□ -0.2
CASC4-204ENST00000557945 KRTDAPP60985 99 aa13.83□□□□□ -0.2
CASC4-204ENST00000557945 CNBPP62633 177 aaKnown RBP13.83□□□□□ -0.2
CASC4-204ENST00000557945 TOMM7Q9P0U1 55 aa13.83□□□□□ -0.2
CASC4-204ENST00000557945 SMIM1B2RUZ4 78 aa13.82□□□□□ -0.2
CASC4-204ENST00000557945 PRSS2P07478 247 aa13.82□□□□□ -0.2
CASC4-204ENST00000557945 GCSHP23434 173 aa13.82□□□□□ -0.2
CASC4-204ENST00000557945 LINC01620Q4KN68 170 aa13.82□□□□□ -0.2
CASC4-204ENST00000557945 CAMK2N2Q96S95 79 aa13.82□□□□□ -0.2
CASC4-204ENST00000557945 C3orf79P0CE67 100 aa13.81□□□□□ -0.2
CASC4-204ENST00000557945 HIST1H2BLQ99880 126 aa13.81□□□□□ -0.2
CASC4-204ENST00000557945 DPM2O94777 84 aa13.8□□□□□ -0.2
CASC4-204ENST00000557945 PLNP26678 52 aa13.8□□□□□ -0.2
CASC4-204ENST00000557945 SYCNQ0VAF6 134 aa13.8□□□□□ -0.2
CASC4-204ENST00000557945 PET117Q6UWS5 81 aa13.8□□□□□ -0.2
CASC4-204ENST00000557945 C2orf48Q96LS8 159 aa13.8□□□□□ -0.2
CASC4-204ENST00000557945 EPPK1P58107 5090 aaKnown RBP13.79□□□□□ -0.2
CASC4-204ENST00000557945 C5orf52A6NGY3 159 aa13.79□□□□□ -0.2
CASC4-204ENST00000557945 CARD19Q96LW7 228 aa13.79□□□□□ -0.2
CASC4-204ENST00000557945 TMA7Q9Y2S6 64 aaKnown RBP13.79□□□□□ -0.2
CASC4-204ENST00000557945 KIAA0087Q14695 138 aa13.78□□□□□ -0.2
CASC4-204ENST00000557945 C6orf226Q5I0X4 101 aa13.78□□□□□ -0.2
CASC4-204ENST00000557945 DNAH5Q8TE73 4624 aa13.77□□□□□ -0.2
CASC4-204ENST00000557945 IGKCP01834 107 aa13.77□□□□□ -0.21
CASC4-204ENST00000557945 Q6ZRU5 148 aa13.77□□□□□ -0.21
CASC4-204ENST00000557945 Q8IZM0 81 aa13.77□□□□□ -0.21
CASC4-204ENST00000557945 C9orf163Q8N9P6 203 aa13.77□□□□□ -0.21
CASC4-204ENST00000557945 NDUFA1O15239 70 aa13.76□□□□□ -0.21
CASC4-204ENST00000557945 KRTAP10-1P60331 282 aa13.76□□□□□ -0.21
CASC4-204ENST00000557945 CKS1BP61024 79 aa13.76□□□□□ -0.21
CASC4-204ENST00000557945 COX7B2Q8TF08 81 aa13.76□□□□□ -0.21
CASC4-204ENST00000557945 PKHD1P08F94 4074 aa13.76□□□□□ -0.21
CASC4-204ENST00000557945 F8WDY8 70 aa13.75□□□□□ -0.21
CASC4-204ENST00000557945 LINC01545Q5VT33 79 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 293.2 ms