RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 A0A096LNJ9 63 aa9.32□□□□□ -0.92
USP3-205ENST00000557884 IGHV1-58A0A0C4DH39 117 aa9.32□□□□□ -0.92
USP3-205ENST00000557884 MALP21145 153 aa9.32□□□□□ -0.92
USP3-205ENST00000557884 UBE2D1P51668 147 aa9.32□□□□□ -0.92
USP3-205ENST00000557884 ERASQ7Z444 233 aa9.32□□□□□ -0.92
USP3-205ENST00000557884 LINC00526Q96FQ7 95 aa9.32□□□□□ -0.92
USP3-205ENST00000557884 SLPIP03973 132 aa9.31□□□□□ -0.92
USP3-205ENST00000557884 NPSP0C0P6 89 aa9.31□□□□□ -0.92
USP3-205ENST00000557884 PAPPA-AS1Q5QFB9 102 aa9.31□□□□□ -0.92
USP3-205ENST00000557884 LINC00242Q5T6M2 205 aa9.31□□□□□ -0.92
USP3-205ENST00000557884 BAGE3Q86Y29 109 aa9.31□□□□□ -0.92
USP3-205ENST00000557884 GVQW2A0A096LPI5 108 aaPredicted RBP9.3□□□□□ -0.92
USP3-205ENST00000557884 ATP6V1G1O75348 118 aa9.3□□□□□ -0.92
USP3-205ENST00000557884 HBDP02042 147 aa9.3□□□□□ -0.92
USP3-205ENST00000557884 HAMPP81172 84 aa9.3□□□□□ -0.92
USP3-205ENST00000557884 COX6A2Q02221 97 aa9.3□□□□□ -0.92
USP3-205ENST00000557884 IGHV3OR16-9A0A0B4J2B5 98 aa9.29□□□□□ -0.92
USP3-205ENST00000557884 LINC01549A6NIU2 74 aa9.29□□□□□ -0.92
USP3-205ENST00000557884 CNBPP62633 177 aaKnown RBP9.29□□□□□ -0.92
USP3-205ENST00000557884 FAM30AQ9NZY2 134 aa9.29□□□□□ -0.92
USP3-205ENST00000557884 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.28□□□□□ -0.92
USP3-205ENST00000557884 CDK2AP2O75956 126 aa9.28□□□□□ -0.92
USP3-205ENST00000557884 CHCHD1Q96BP2 118 aaKnown RBP9.28□□□□□ -0.92
USP3-205ENST00000557884 ZNF561-AS1K7EIQ3 104 aa9.27□□□□□ -0.93
USP3-205ENST00000557884 APOMO95445 188 aa9.27□□□□□ -0.93
USP3-205ENST00000557884 PDZD11Q5EBL8 140 aa9.27□□□□□ -0.93
USP3-205ENST00000557884 C9orf163Q8N9P6 203 aa9.27□□□□□ -0.93
USP3-205ENST00000557884 CST9LQ9H4G1 147 aa9.27□□□□□ -0.93
USP3-205ENST00000557884 FAT1Q14517 4588 aa9.27□□□□□ -0.93
USP3-205ENST00000557884 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.26□□□□□ -0.93
USP3-205ENST00000557884 A0A0J9YXV3 536 aa9.26□□□□□ -0.93
USP3-205ENST00000557884 S100A1P23297 94 aa9.26□□□□□ -0.93
USP3-205ENST00000557884 NDUFA6P56556 154 aa9.26□□□□□ -0.93
USP3-205ENST00000557884 SPAG11BQ08648 103 aa9.26□□□□□ -0.93
USP3-205ENST00000557884 PMVKQ15126 192 aa9.26□□□□□ -0.93
USP3-205ENST00000557884 ORAOV1Q8WV07 137 aa9.26□□□□□ -0.93
USP3-205ENST00000557884 IGLV4-69A0A075B6H9 119 aa9.25□□□□□ -0.93
USP3-205ENST00000557884 IGHV3-64A0A075B6Q5 118 aa9.25□□□□□ -0.93
USP3-205ENST00000557884 A0A087WZ39 114 aa9.25□□□□□ -0.93
USP3-205ENST00000557884 HSBP1O75506 76 aa9.25□□□□□ -0.93
USP3-205ENST00000557884 SERF1AO75920 110 aa9.25□□□□□ -0.93
USP3-205ENST00000557884 XGP55808 180 aa9.25□□□□□ -0.93
USP3-205ENST00000557884 LINC00310P59036 64 aa9.25□□□□□ -0.93
USP3-205ENST00000557884 FAM19A2Q8N3H0 131 aa9.25□□□□□ -0.93
USP3-205ENST00000557884 GEMIN7Q9H840 131 aaKnown RBP9.25□□□□□ -0.93
USP3-205ENST00000557884 CARD19Q96LW7 228 aa9.24□□□□□ -0.93
USP3-205ENST00000557884 ATP5LO75964 103 aa9.23□□□□□ -0.93
USP3-205ENST00000557884 HERVK_113P63121 156 aa9.23□□□□□ -0.93
USP3-205ENST00000557884 SYCNQ0VAF6 134 aa9.23□□□□□ -0.93
USP3-205ENST00000557884 FAM19A3Q7Z5A8 133 aa9.23□□□□□ -0.93
USP3-205ENST00000557884 LINC00469Q8N7U9 141 aa9.23□□□□□ -0.93
USP3-205ENST00000557884 OR10D4PQ8NGN7 298 aa9.23□□□□□ -0.93
USP3-205ENST00000557884 CDKN2A-AS1Q9UH64 79 aa9.23□□□□□ -0.93
USP3-205ENST00000557884 TINCRA0A1B0GVN0 87 aa9.22□□□□□ -0.93
USP3-205ENST00000557884 NUPR1O60356 82 aa9.22□□□□□ -0.93
USP3-205ENST00000557884 SEC11AP67812 179 aa9.22□□□□□ -0.93
USP3-205ENST00000557884 SDIM1Q6ZPB5 146 aa9.22□□□□□ -0.93
USP3-205ENST00000557884 Q6ZSA8 131 aa9.22□□□□□ -0.93
USP3-205ENST00000557884 CAMK2N2Q96S95 79 aa9.22□□□□□ -0.93
USP3-205ENST00000557884 HIST1H2BKO60814 126 aa9.21□□□□□ -0.94
USP3-205ENST00000557884 HIST1H2BJP06899 126 aa9.21□□□□□ -0.94
USP3-205ENST00000557884 HIST1H2BOP23527 126 aa9.21□□□□□ -0.94
USP3-205ENST00000557884 HIST1H2BBP33778 126 aa9.21□□□□□ -0.94
USP3-205ENST00000557884 HIST1H2BDP58876 126 aa9.21□□□□□ -0.94
USP3-205ENST00000557884 HIST1H2BCP62807 126 aa9.21□□□□□ -0.94
USP3-205ENST00000557884 HIST2H2BEQ16778 126 aa9.21□□□□□ -0.94
USP3-205ENST00000557884 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.21□□□□□ -0.94
USP3-205ENST00000557884 Q6ZRU5 148 aa9.21□□□□□ -0.94
USP3-205ENST00000557884 HIST1H2BHQ93079 126 aa9.21□□□□□ -0.94
USP3-205ENST00000557884 HIST1H2BNQ99877 126 aa9.21□□□□□ -0.94
USP3-205ENST00000557884 HIST1H2BMQ99879 126 aa9.21□□□□□ -0.94
USP3-205ENST00000557884 PANO1I0J062 215 aa9.2□□□□□ -0.94
USP3-205ENST00000557884 LINC01561Q8N1V8 128 aa9.2□□□□□ -0.94
USP3-205ENST00000557884 IFI27L1Q96BM0 104 aa9.2□□□□□ -0.94
USP3-205ENST00000557884 C2orf48Q96LS8 159 aa9.2□□□□□ -0.94
USP3-205ENST00000557884 PACRGQ96M98 296 aaPredicted RBP9.2□□□□□ -0.94
USP3-205ENST00000557884 KRTAP17-1Q9BYP8 105 aa9.2□□□□□ -0.94
USP3-205ENST00000557884 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.2□□□□□ -0.94
USP3-205ENST00000557884 SMR3BP02814 79 aaPredicted RBP9.19□□□□□ -0.94
USP3-205ENST00000557884 CHTF8P0CG12 524 aa9.19□□□□□ -0.94
USP3-205ENST00000557884 KIAA0087Q14695 138 aa9.19□□□□□ -0.94
USP3-205ENST00000557884 SCXQ7RTU7 201 aa9.19□□□□□ -0.94
USP3-205ENST00000557884 CHAC1Q9BUX1 264 aa9.19□□□□□ -0.94
USP3-205ENST00000557884 TOMM7Q9P0U1 55 aa9.19□□□□□ -0.94
USP3-205ENST00000557884 VPS13BQ7Z7G8 4022 aa9.18□□□□□ -0.94
USP3-205ENST00000557884 IGLC3P0DOY3 106 aa9.18□□□□□ -0.94
USP3-205ENST00000557884 C10orf25Q5T742 122 aa9.18□□□□□ -0.94
USP3-205ENST00000557884 IGLV5-45A0A087WSX0 123 aa9.17□□□□□ -0.94
USP3-205ENST00000557884 IGKV2-24A0A0C4DH68 120 aa9.17□□□□□ -0.94
USP3-205ENST00000557884 NDUFA1O15239 70 aa9.17□□□□□ -0.94
USP3-205ENST00000557884 LEPROTL1O95214 131 aa9.17□□□□□ -0.94
USP3-205ENST00000557884 PRSS2P07478 247 aa9.17□□□□□ -0.94
USP3-205ENST00000557884 SPINK8P0C7L1 97 aa9.17□□□□□ -0.94
USP3-205ENST00000557884 FABP4P15090 132 aa9.17□□□□□ -0.94
USP3-205ENST00000557884 C2orf82Q6UX34 121 aa9.17□□□□□ -0.94
USP3-205ENST00000557884 UNQ6190/PRO20217Q6UXQ8 127 aa9.17□□□□□ -0.94
USP3-205ENST00000557884 CHTOPQ9Y3Y2 248 aaKnown RBP9.17□□□□□ -0.94
USP3-205ENST00000557884 SMIM1B2RUZ4 78 aa9.16□□□□□ -0.94
USP3-205ENST00000557884 H0Y8G0 127 aa9.16□□□□□ -0.94
USP3-205ENST00000557884 CIRBP-AS1Q8TBR5 109 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms