RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 LEPROTL1O95214 131 aa8.42□□□□□ -1.06
SHMT2-227ENST00000557269 FAM19A3Q7Z5A8 133 aa8.42□□□□□ -1.06
SHMT2-227ENST00000557269 C5orf38Q86SI9 138 aa8.42□□□□□ -1.06
SHMT2-227ENST00000557269 PKD1P98161 4303 aa8.41□□□□□ -1.06
SHMT2-227ENST00000557269 KRTAP10-2P60368 255 aa8.41□□□□□ -1.06
SHMT2-227ENST00000557269 Q8N814 137 aa8.41□□□□□ -1.06
SHMT2-227ENST00000557269 C15orf56Q8N910 161 aa8.41□□□□□ -1.06
SHMT2-227ENST00000557269 DNAH11Q96DT5 4516 aa8.41□□□□□ -1.06
SHMT2-227ENST00000557269 PRSS1P07477 247 aa8.4□□□□□ -1.06
SHMT2-227ENST00000557269 IGLV4-69A0A075B6H9 119 aa8.39□□□□□ -1.07
SHMT2-227ENST00000557269 COX7A2LO14548 114 aa8.39□□□□□ -1.07
SHMT2-227ENST00000557269 SPATA12Q7Z6I5 190 aa8.39□□□□□ -1.07
SHMT2-227ENST00000557269 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.38□□□□□ -1.07
SHMT2-227ENST00000557269 TINCRA0A1B0GVN0 87 aa8.38□□□□□ -1.07
SHMT2-227ENST00000557269 H0Y8G0 127 aa8.38□□□□□ -1.07
SHMT2-227ENST00000557269 HIGD2BQ4VC39 106 aa8.38□□□□□ -1.07
SHMT2-227ENST00000557269 NTN5Q8WTR8 489 aaPredicted RBP8.38□□□□□ -1.07
SHMT2-227ENST00000557269 CDKN2A-AS1Q9UH64 79 aa8.38□□□□□ -1.07
SHMT2-227ENST00000557269 HSPB8Q9UJY1 196 aa8.38□□□□□ -1.07
SHMT2-227ENST00000557269 TMA7Q9Y2S6 64 aaKnown RBP8.38□□□□□ -1.07
SHMT2-227ENST00000557269 A0A087WZ39 114 aa8.37□□□□□ -1.07
SHMT2-227ENST00000557269 TRAV12-1A0A0B4J245 112 aa8.37□□□□□ -1.07
SHMT2-227ENST00000557269 EREGO14944 169 aa8.37□□□□□ -1.07
SHMT2-227ENST00000557269 SLPIP03973 132 aa8.37□□□□□ -1.07
SHMT2-227ENST00000557269 IGLC3P0DOY3 106 aa8.37□□□□□ -1.07
SHMT2-227ENST00000557269 HERVK_113P63121 156 aa8.37□□□□□ -1.07
SHMT2-227ENST00000557269 LINC00526Q96FQ7 95 aa8.37□□□□□ -1.07
SHMT2-227ENST00000557269 GEMIN7Q9H840 131 aaKnown RBP8.37□□□□□ -1.07
SHMT2-227ENST00000557269 CHTOPQ9Y3Y2 248 aaKnown RBP8.37□□□□□ -1.07
SHMT2-227ENST00000557269 IGLV5-45A0A087WSX0 123 aa8.36□□□□□ -1.07
SHMT2-227ENST00000557269 GVQW2A0A096LPI5 108 aaPredicted RBP8.36□□□□□ -1.07
SHMT2-227ENST00000557269 IGHV1-58A0A0C4DH39 117 aa8.36□□□□□ -1.07
SHMT2-227ENST00000557269 hDV102S1A0JD36 115 aa8.36□□□□□ -1.07
SHMT2-227ENST00000557269 MALP21145 153 aa8.36□□□□□ -1.07
SHMT2-227ENST00000557269 ODF1Q14990 250 aa8.36□□□□□ -1.07
SHMT2-227ENST00000557269 HIST3H2BBQ8N257 126 aa8.36□□□□□ -1.07
SHMT2-227ENST00000557269 MRPL35Q9NZE8 188 aaKnown RBP8.36□□□□□ -1.07
SHMT2-227ENST00000557269 IGHV3-64A0A075B6Q5 118 aa8.35□□□□□ -1.07
SHMT2-227ENST00000557269 C11orf86A6NJI1 115 aa8.35□□□□□ -1.07
SHMT2-227ENST00000557269 SNRPEP62304 92 aaKnown RBP8.35□□□□□ -1.07
SHMT2-227ENST00000557269 SEC11AP67812 179 aa8.35□□□□□ -1.07
SHMT2-227ENST00000557269 CFAP161Q6P656 301 aa8.35□□□□□ -1.07
SHMT2-227ENST00000557269 LINC00469Q8N7U9 141 aa8.35□□□□□ -1.07
SHMT2-227ENST00000557269 CHAC1Q9BUX1 264 aa8.35□□□□□ -1.07
SHMT2-227ENST00000557269 S100A6P06703 90 aa8.34□□□□□ -1.07
SHMT2-227ENST00000557269 ZNF22P17026 224 aaPredicted RBP8.34□□□□□ -1.07
SHMT2-227ENST00000557269 C14orf177Q52M58 125 aa8.34□□□□□ -1.07
SHMT2-227ENST00000557269 PACRGQ96M98 296 aaPredicted RBP8.34□□□□□ -1.07
SHMT2-227ENST00000557269 PMCHL2Q9BQD1 86 aa8.34□□□□□ -1.07
SHMT2-227ENST00000557269 MAP1LC3CQ9BXW4 147 aa8.34□□□□□ -1.07
SHMT2-227ENST00000557269 HECTD4Q9Y4D8 3996 aa8.34□□□□□ -1.07
SHMT2-227ENST00000557269 EPPK1P58107 5090 aaKnown RBP8.33□□□□□ -1.08
SHMT2-227ENST00000557269 IGLV5-52A0A0A0MRZ9 124 aa8.33□□□□□ -1.08
SHMT2-227ENST00000557269 C5orf52A6NGY3 159 aa8.33□□□□□ -1.08
SHMT2-227ENST00000557269 F8VRH5 84 aa8.33□□□□□ -1.08
SHMT2-227ENST00000557269 SYS1-DBNDD2H3BUS1 97 aa8.33□□□□□ -1.08
SHMT2-227ENST00000557269 C3orf79P0CE67 100 aa8.33□□□□□ -1.08
SHMT2-227ENST00000557269 LINC01620Q4KN68 170 aa8.33□□□□□ -1.08
SHMT2-227ENST00000557269 ORAOV1Q8WV07 137 aa8.33□□□□□ -1.08
SHMT2-227ENST00000557269 HIST1H2BLQ99880 126 aa8.33□□□□□ -1.08
SHMT2-227ENST00000557269 PGPEP1Q9NXJ5 209 aa8.33□□□□□ -1.08
SHMT2-227ENST00000557269 SMIM1B2RUZ4 78 aa8.32□□□□□ -1.08
SHMT2-227ENST00000557269 APOMO95445 188 aa8.32□□□□□ -1.08
SHMT2-227ENST00000557269 SPINK8P0C7L1 97 aa8.32□□□□□ -1.08
SHMT2-227ENST00000557269 KIAA0087Q14695 138 aa8.32□□□□□ -1.08
SHMT2-227ENST00000557269 LINC01561Q8N1V8 128 aa8.32□□□□□ -1.08
SHMT2-227ENST00000557269 KRTDAPP60985 99 aa8.31□□□□□ -1.08
SHMT2-227ENST00000557269 SPAG11BQ08648 103 aa8.31□□□□□ -1.08
SHMT2-227ENST00000557269 OR10D4PQ8NGN7 298 aa8.31□□□□□ -1.08
SHMT2-227ENST00000557269 ZNF561-AS1K7EIQ3 104 aa8.3□□□□□ -1.08
SHMT2-227ENST00000557269 S100A2P29034 98 aa8.3□□□□□ -1.08
SHMT2-227ENST00000557269 CNBPP62633 177 aaKnown RBP8.3□□□□□ -1.08
SHMT2-227ENST00000557269 TMEM170BQ5T4T1 132 aa8.3□□□□□ -1.08
SHMT2-227ENST00000557269 C16orf90A8MZG2 172 aa8.29□□□□□ -1.08
SHMT2-227ENST00000557269 KRTAP10-1P60331 282 aa8.29□□□□□ -1.08
SHMT2-227ENST00000557269 CDPF1Q6NVV7 123 aa8.29□□□□□ -1.08
SHMT2-227ENST00000557269 PET117Q6UWS5 81 aa8.29□□□□□ -1.08
SHMT2-227ENST00000557269 TOMM7Q9P0U1 55 aa8.29□□□□□ -1.08
SHMT2-227ENST00000557269 DNAH5Q8TE73 4624 aa8.28□□□□□ -1.08
SHMT2-227ENST00000557269 IGLV5-39A0A0G2JS06 123 aa8.28□□□□□ -1.08
SHMT2-227ENST00000557269 TMEM223A0PJW6 202 aa8.28□□□□□ -1.08
SHMT2-227ENST00000557269 H3BRM9 83 aa8.28□□□□□ -1.08
SHMT2-227ENST00000557269 DPM2O94777 84 aa8.28□□□□□ -1.08
SHMT2-227ENST00000557269 GCSHP23434 173 aa8.28□□□□□ -1.08
SHMT2-227ENST00000557269 C10orf25Q5T742 122 aa8.28□□□□□ -1.08
SHMT2-227ENST00000557269 LINC01545Q5VT33 79 aa8.28□□□□□ -1.08
SHMT2-227ENST00000557269 C2orf82Q6UX34 121 aa8.28□□□□□ -1.08
SHMT2-227ENST00000557269 Q6ZRU5 148 aa8.28□□□□□ -1.08
SHMT2-227ENST00000557269 PKHD1P08F94 4074 aa8.28□□□□□ -1.08
SHMT2-227ENST00000557269 IGKCP01834 107 aa8.27□□□□□ -1.09
SHMT2-227ENST00000557269 SYCNQ0VAF6 134 aa8.27□□□□□ -1.09
SHMT2-227ENST00000557269 UNQ6190/PRO20217Q6UXQ8 127 aa8.27□□□□□ -1.09
SHMT2-227ENST00000557269 Q8IZM0 81 aa8.27□□□□□ -1.09
SHMT2-227ENST00000557269 C9orf163Q8N9P6 203 aa8.27□□□□□ -1.09
SHMT2-227ENST00000557269 C2orf48Q96LS8 159 aa8.27□□□□□ -1.09
SHMT2-227ENST00000557269 CAMK2N2Q96S95 79 aa8.27□□□□□ -1.09
SHMT2-227ENST00000557269 DYNC1H1Q14204 4646 aaKnown RBP8.26□□□□□ -1.09
SHMT2-227ENST00000557269 PLNP26678 52 aa8.26□□□□□ -1.09
SHMT2-227ENST00000557269 COX7B2Q8TF08 81 aa8.26□□□□□ -1.09
SHMT2-227ENST00000557269 CARD19Q96LW7 228 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms