RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 PTH2Q96A98 100 aa5.96□□□□□ -1.45
SYNE2-220ENST00000555612 PCNX3Q9H6A9 2034 aa5.96□□□□□ -1.45
SYNE2-220ENST00000555612 MYO9AB2RTY4 2548 aa5.96□□□□□ -1.46
SYNE2-220ENST00000555612 C3orf84H3BNL1 204 aa5.96□□□□□ -1.46
SYNE2-220ENST00000555612 PYGO1Q9Y3Y4 419 aa5.96□□□□□ -1.46
SYNE2-220ENST00000555612 TCL1BO95988 128 aa5.95□□□□□ -1.46
SYNE2-220ENST00000555612 FSHBP01225 129 aa5.95□□□□□ -1.46
SYNE2-220ENST00000555612 ARHGAP32A7KAX9 2087 aa5.95□□□□□ -1.46
SYNE2-220ENST00000555612 CYSRT1A8MQ03 144 aa5.95□□□□□ -1.46
SYNE2-220ENST00000555612 CCKP06307 115 aa5.95□□□□□ -1.46
SYNE2-220ENST00000555612 M0QXV9 152 aa5.95□□□□□ -1.46
SYNE2-220ENST00000555612 DHRS4-AS1Q9P1J3 65 aa5.95□□□□□ -1.46
SYNE2-220ENST00000555612 USP17L23D6RBM5 183 aa5.95□□□□□ -1.46
SYNE2-220ENST00000555612 ATOX1O00244 68 aa5.95□□□□□ -1.46
SYNE2-220ENST00000555612 LINC00310P59036 64 aa5.95□□□□□ -1.46
SYNE2-220ENST00000555612 SS18L2Q9UHA2 77 aa5.94□□□□□ -1.46
SYNE2-220ENST00000555612 Q6ZQY7 126 aa5.94□□□□□ -1.46
SYNE2-220ENST00000555612 C6orf223Q8N319 242 aa5.94□□□□□ -1.46
SYNE2-220ENST00000555612 ZFYVE26Q68DK2 2539 aa5.93□□□□□ -1.46
SYNE2-220ENST00000555612 C2CD3Q4AC94 2353 aa5.93□□□□□ -1.46
SYNE2-220ENST00000555612 KIAA1549Q9HCM3 1950 aa5.93□□□□□ -1.46
SYNE2-220ENST00000555612 NRACQ8N912 160 aa5.93□□□□□ -1.46
SYNE2-220ENST00000555612 RPL28P46779 137 aaKnown RBP5.93□□□□□ -1.46
SYNE2-220ENST00000555612 NHLRC4P0CG21 123 aaPredicted RBP5.93□□□□□ -1.46
SYNE2-220ENST00000555612 ZNF462Q96JM2 2506 aa5.92□□□□□ -1.46
SYNE2-220ENST00000555612 CRIP2P52943 208 aaPredicted RBP5.92□□□□□ -1.46
SYNE2-220ENST00000555612 UNQ6190/PRO20217Q6UXQ8 127 aa5.92□□□□□ -1.46
SYNE2-220ENST00000555612 CDC42SE2Q9NRR3 84 aa5.92□□□□□ -1.46
SYNE2-220ENST00000555612 TEX49A0A1B0GTD5 131 aa5.92□□□□□ -1.46
SYNE2-220ENST00000555612 MAPKAPK5-AS1Q8N8E1 139 aa5.92□□□□□ -1.46
SYNE2-220ENST00000555612 SPTSSBQ8NFR3 76 aa5.92□□□□□ -1.46
SYNE2-220ENST00000555612 ABCA12Q86UK0 2595 aa5.92□□□□□ -1.46
SYNE2-220ENST00000555612 ZNF73O43830 326 aaPredicted RBP5.92□□□□□ -1.46
SYNE2-220ENST00000555612 GAS8-AS1O95177 125 aa5.92□□□□□ -1.46
SYNE2-220ENST00000555612 MRPS36P82909 103 aaKnown RBP5.92□□□□□ -1.46
SYNE2-220ENST00000555612 POLR2KP53803 58 aaKnown RBP5.91□□□□□ -1.46
SYNE2-220ENST00000555612 SMIM20Q8N5G0 67 aa5.91□□□□□ -1.46
SYNE2-220ENST00000555612 CIRBP-AS1Q8TBR5 109 aa5.91□□□□□ -1.46
SYNE2-220ENST00000555612 PLXNB1O43157 2135 aa5.91□□□□□ -1.46
SYNE2-220ENST00000555612 FHL2Q14192 279 aa5.91□□□□□ -1.46
SYNE2-220ENST00000555612 TP73-AS1Q9UF72 201 aa5.91□□□□□ -1.46
SYNE2-220ENST00000555612 TANC2Q9HCD6 1990 aa5.91□□□□□ -1.46
SYNE2-220ENST00000555612 WFDC13Q8IUB5 93 aa5.91□□□□□ -1.46
SYNE2-220ENST00000555612 Q8IZM0 81 aa5.91□□□□□ -1.46
SYNE2-220ENST00000555612 LRP4O75096 1905 aa5.91□□□□□ -1.46
SYNE2-220ENST00000555612 B5MCH6 92 aa5.91□□□□□ -1.46
SYNE2-220ENST00000555612 PTPRSQ13332 1948 aa5.91□□□□□ -1.46
SYNE2-220ENST00000555612 LINC01556Q5JQF7 62 aa5.91□□□□□ -1.46
SYNE2-220ENST00000555612 TRIAP1O43715 76 aa5.9□□□□□ -1.46
SYNE2-220ENST00000555612 C9orf116Q5BN46 136 aaPredicted RBP5.9□□□□□ -1.46
SYNE2-220ENST00000555612 C1orf137Q5JT78 98 aa5.9□□□□□ -1.46
SYNE2-220ENST00000555612 CHCHD7Q9BUK0 85 aa5.9□□□□□ -1.46
SYNE2-220ENST00000555612 LRRK2Q5S007 2527 aa5.9□□□□□ -1.47
SYNE2-220ENST00000555612 FHL3Q13643 280 aa5.9□□□□□ -1.47
SYNE2-220ENST00000555612 COL5A1P20908 1838 aaPredicted RBP5.9□□□□□ -1.47
SYNE2-220ENST00000555612 SDIM1Q6ZPB5 146 aa5.89□□□□□ -1.47
SYNE2-220ENST00000555612 ENHOQ6UWT2 76 aa5.89□□□□□ -1.47
SYNE2-220ENST00000555612 IGLV4-60A0A075B6I1 120 aa5.89□□□□□ -1.47
SYNE2-220ENST00000555612 COX17Q14061 63 aa5.89□□□□□ -1.47
SYNE2-220ENST00000555612 MPLKIPQ8TAP9 179 aa5.89□□□□□ -1.47
SYNE2-220ENST00000555612 EGFEM1PQ0D2K5 195 aa5.89□□□□□ -1.47
SYNE2-220ENST00000555612 COX6A2Q02221 97 aa5.88□□□□□ -1.47
SYNE2-220ENST00000555612 KRTAP24-1Q3LI83 254 aa5.88□□□□□ -1.47
SYNE2-220ENST00000555612 C10orf25Q5T742 122 aa5.88□□□□□ -1.47
SYNE2-220ENST00000555612 TRBV30A0A0K0K1B3 111 aa5.88□□□□□ -1.47
SYNE2-220ENST00000555612 RAI1Q7Z5J4 1906 aaPredicted RBP5.88□□□□□ -1.47
SYNE2-220ENST00000555612 COX8CQ7Z4L0 72 aa5.88□□□□□ -1.47
SYNE2-220ENST00000555612 LINC00643Q86TS7 51 aa5.88□□□□□ -1.47
SYNE2-220ENST00000555612 REG3GQ6UW15 175 aa5.88□□□□□ -1.47
SYNE2-220ENST00000555612 LYPD5Q6UWN5 251 aa5.88□□□□□ -1.47
SYNE2-220ENST00000555612 MRPS12O15235 138 aaKnown RBP5.88□□□□□ -1.47
SYNE2-220ENST00000555612 SMIM11BQ8TCY0 68 aa5.88□□□□□ -1.47
SYNE2-220ENST00000555612 TLN2Q9Y4G6 2542 aa5.87□□□□□ -1.47
SYNE2-220ENST00000555612 LINC00242Q5T6M2 205 aa5.87□□□□□ -1.47
SYNE2-220ENST00000555612 MDFIQ99750 246 aa5.87□□□□□ -1.47
SYNE2-220ENST00000555612 CNFNQ9BYD5 112 aa5.87□□□□□ -1.47
SYNE2-220ENST00000555612 ZNF580Q9UK33 172 aa5.87□□□□□ -1.47
SYNE2-220ENST00000555612 ANKRD11Q6UB99 2663 aaPredicted RBP5.87□□□□□ -1.47
SYNE2-220ENST00000555612 TIMM17BO60830 172 aa5.87□□□□□ -1.47
SYNE2-220ENST00000555612 LINC00694P0DN24 101 aa5.87□□□□□ -1.47
SYNE2-220ENST00000555612 C3orf22Q8N5N4 141 aa5.86□□□□□ -1.47
SYNE2-220ENST00000555612 POM121L12Q8N7R1 296 aa5.86□□□□□ -1.47
SYNE2-220ENST00000555612 BRK1Q8WUW1 75 aa5.86□□□□□ -1.47
SYNE2-220ENST00000555612 CELA1Q9UNI1 258 aa5.86□□□□□ -1.47
SYNE2-220ENST00000555612 COL4A2P08572 1712 aa5.86□□□□□ -1.47
SYNE2-220ENST00000555612 TRBV10-3A0A0K0K1G6 114 aa5.85□□□□□ -1.47
SYNE2-220ENST00000555612 URB1-AS1Q96HZ7 61 aa5.85□□□□□ -1.47
SYNE2-220ENST00000555612 PLA2G1BP04054 148 aaKnown RBP5.85□□□□□ -1.47
SYNE2-220ENST00000555612 C2orf91Q6ZV80 131 aa5.84□□□□□ -1.47
SYNE2-220ENST00000555612 USP9XQ93008 2570 aaPredicted RBP5.84□□□□□ -1.47
SYNE2-220ENST00000555612 Q6ZSN1 163 aa5.84□□□□□ -1.47
SYNE2-220ENST00000555612 C20orf197Q8N268 126 aa5.84□□□□□ -1.47
SYNE2-220ENST00000555612 FN1P02751 2386 aaKnown RBP5.84□□□□□ -1.47
SYNE2-220ENST00000555612 SMIM1B2RUZ4 78 aa5.84□□□□□ -1.48
SYNE2-220ENST00000555612 PRR3P79522 188 aaKnown RBP5.84□□□□□ -1.48
SYNE2-220ENST00000555612 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.84□□□□□ -1.48
SYNE2-220ENST00000555612 MUC7Q8TAX7 377 aa5.84□□□□□ -1.48
SYNE2-220ENST00000555612 NDUFV3P56181 108 aaKnown RBP5.83□□□□□ -1.48
SYNE2-220ENST00000555612 FASNP49327 2511 aaKnown RBP5.83□□□□□ -1.48
SYNE2-220ENST00000555612 LST1O00453 97 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms