RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 MYO15AQ9UKN7 3530 aa-0.16□□□□□ -2.43
SCFD1-216ENST00000555550 CORTO00230 105 aa-0.16□□□□□ -2.44
SCFD1-216ENST00000555550 PIN1P1O15428 100 aa-0.16□□□□□ -2.44
SCFD1-216ENST00000555550 BCE1O60756 84 aa-0.16□□□□□ -2.44
SCFD1-216ENST00000555550 SNCGO76070 127 aa-0.16□□□□□ -2.44
SCFD1-216ENST00000555550 CFAP126Q5VTH2 177 aa-0.16□□□□□ -2.44
SCFD1-216ENST00000555550 MYOZ3Q8TDC0 251 aa-0.16□□□□□ -2.44
SCFD1-216ENST00000555550 LINC01558Q9Y6Z2 57 aa-0.16□□□□□ -2.44
SCFD1-216ENST00000555550 WNK3Q9BYP7 1800 aa-0.16□□□□□ -2.44
SCFD1-216ENST00000555550 SPTBN2O15020 2390 aa-0.16□□□□□ -2.44
SCFD1-216ENST00000555550 PEG3Q9GZU2 1588 aa-0.16□□□□□ -2.44
SCFD1-216ENST00000555550 DIP2CQ9Y2E4 1556 aa-0.16□□□□□ -2.44
SCFD1-216ENST00000555550 PI4KAP42356 2102 aa-0.16□□□□□ -2.44
SCFD1-216ENST00000555550 SPG11Q96JI7 2443 aa-0.17□□□□□ -2.44
SCFD1-216ENST00000555550 MIF4GDA9UHW6 222 aaKnown RBP-0.17□□□□□ -2.44
SCFD1-216ENST00000555550 HMGN4O00479 90 aa-0.17□□□□□ -2.44
SCFD1-216ENST00000555550 ZNF609O15014 1411 aa-0.17□□□□□ -2.44
SCFD1-216ENST00000555550 PPP1R17O96001 155 aa-0.17□□□□□ -2.44
SCFD1-216ENST00000555550 PRM1P04553 51 aa-0.17□□□□□ -2.44
SCFD1-216ENST00000555550 GCHFRP30047 84 aa-0.17□□□□□ -2.44
SCFD1-216ENST00000555550 COX6A2Q02221 97 aa-0.17□□□□□ -2.44
SCFD1-216ENST00000555550 CATR1Q13166 79 aa-0.17□□□□□ -2.44
SCFD1-216ENST00000555550 C10orf128Q5T292 105 aa-0.17□□□□□ -2.44
SCFD1-216ENST00000555550 TSC22D3Q99576 134 aa-0.17□□□□□ -2.44
SCFD1-216ENST00000555550 REV3LO60673 3130 aa-0.17□□□□□ -2.44
SCFD1-216ENST00000555550 HECTD4Q9Y4D8 3996 aa-0.17□□□□□ -2.44
SCFD1-216ENST00000555550 PTPRZ1P23471 2315 aaPredicted RBP-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 ZFYVE16Q7Z3T8 1539 aa-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 TRAV22A0A0B4J277 110 aa-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 IGLC7A0M8Q6 106 aa-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 UBE2D3P61077 147 aa-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 UBE2D2P62837 147 aa-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 SPAG11BQ08648 103 aa-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 SPAG11AQ6PDA7 123 aa-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 TTC9CQ8N5M4 171 aa-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 SCP2D1Q9UJQ7 156 aa-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 PAPPAQ13219 1627 aa-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 LRP1BQ9NZR2 4599 aa-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 ADGRL2O95490 1459 aa-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 SHANK2Q9UPX8 1470 aa-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 SCN7AQ01118 1682 aa-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 EHBP1L1Q8N3D4 1523 aa-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 CHD1O14646 1710 aa-0.18□□□□□ -2.44
SCFD1-216ENST00000555550 NF1P21359 2839 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 NHSL1Q5SYE7 1610 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 RAPGEF6Q8TEU7 1601 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 CC2D2AQ9P2K1 1620 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 A6NIN4 97 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 SSSCA1O60232 199 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 APOC2P02655 101 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 SPINK8P0C7L1 97 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 AKAIN1P0CW23 69 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 SPRR2DP22532 72 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 RPL7L1Q6DKI1 246 aaKnown RBP-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 UBE2DNLQ8IWF7 75 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 DEFB123Q8N688 67 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 FAM213BQ8TBF2 198 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 COPS9Q8WXC6 57 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 FAM167A-AS1Q96KT0 104 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 PPP3R2Q96LZ3 170 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 MGST2Q99735 147 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 PPRC1Q5VV67 1664 aaKnown RBP-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 AHCTF1Q8WYP5 2266 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 SPEGQ15772 3267 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 NRKQ7Z2Y5 1582 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 STARD9Q9P2P6 4700 aa-0.19□□□□□ -2.44
SCFD1-216ENST00000555550 SBF2Q86WG5 1849 aa-0.2□□□□□ -2.44
SCFD1-216ENST00000555550 ABCC5O15440 1437 aa-0.2□□□□□ -2.44
SCFD1-216ENST00000555550 SCAPERQ9BY12 1400 aa-0.2□□□□□ -2.44
SCFD1-216ENST00000555550 GVINP1Q7Z2Y8 2422 aa-0.2□□□□□ -2.44
SCFD1-216ENST00000555550 HAMPP81172 84 aa-0.2□□□□□ -2.44
SCFD1-216ENST00000555550 SARNPP82979 210 aaKnown RBP-0.2□□□□□ -2.44
SCFD1-216ENST00000555550 MRPL54Q6P161 138 aaKnown RBP-0.2□□□□□ -2.44
SCFD1-216ENST00000555550 C8orf59Q8N0T1 100 aaPredicted RBP-0.2□□□□□ -2.44
SCFD1-216ENST00000555550 U3KQA8 63 aa-0.2□□□□□ -2.44
SCFD1-216ENST00000555550 LAMA5O15230 3695 aa-0.2□□□□□ -2.44
SCFD1-216ENST00000555550 PTPRQQ9UMZ3 2332 aa-0.2□□□□□ -2.44
SCFD1-216ENST00000555550 TOPAZ1Q8N9V7 1692 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 USF3Q68DE3 2245 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 WDR7Q9Y4E6 1490 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 AKAP6Q13023 2319 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 MAPKBP1O60336 1514 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 FAM135AQ9P2D6 1515 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 BTAF1O14981 1849 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 FAM25AB3EWG3 89 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 FAM25CB3EWG5 89 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 FAM25GB3EWG6 89 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 F6UZH7 168 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 F8VRH5 84 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 IFNGP01579 166 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 C9orf153Q5TBE3 101 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 Q5VSD8 79 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 MYO7BQ6PIF6 2116 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 DYNLRB1Q9NP97 96 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 R4GMQ9 66 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 EIF4G3O43432 1585 aaKnown RBP-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 TACC2O95359 2948 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 NAIPQ13075 1403 aa-0.21□□□□□ -2.44
SCFD1-216ENST00000555550 ARHGAP5Q13017 1502 aa-0.22□□□□□ -2.44
SCFD1-216ENST00000555550 UBE2L5PA0A1B0GUS4 154 aa-0.22□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms