RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 SPXQ9BT56 116 aa8.01□□□□□ -1.13
VPS33B-204ENST00000554660 JPT2Q9H910 190 aa8.01□□□□□ -1.13
VPS33B-204ENST00000554660 SPANXA1Q9NS26 97 aa8.01□□□□□ -1.13
VPS33B-204ENST00000554660 MRPL16Q9NX20 251 aaKnown RBP8.01□□□□□ -1.13
VPS33B-204ENST00000554660 PGPEP1Q9NXJ5 209 aa8.01□□□□□ -1.13
VPS33B-204ENST00000554660 NACAE9PAV3 2078 aa8□□□□□ -1.13
VPS33B-204ENST00000554660 A0A0B4J2C4 111 aa8□□□□□ -1.13
VPS33B-204ENST00000554660 TEX48A0A1B0GUV7 120 aa8□□□□□ -1.13
VPS33B-204ENST00000554660 M0R2P5 195 aa8□□□□□ -1.13
VPS33B-204ENST00000554660 IGKV3-20P01619 116 aa8□□□□□ -1.13
VPS33B-204ENST00000554660 RPL39P62891 51 aaKnown RBP8□□□□□ -1.13
VPS33B-204ENST00000554660 TMEM170BQ5T4T1 132 aa8□□□□□ -1.13
VPS33B-204ENST00000554660 FAM222AQ5U5X8 452 aa8□□□□□ -1.13
VPS33B-204ENST00000554660 C10orf126Q8N4M7 172 aa8□□□□□ -1.13
VPS33B-204ENST00000554660 ZNRF2Q8NHG8 242 aa8□□□□□ -1.13
VPS33B-204ENST00000554660 IGLV4-3A0A075B6K6 122 aa7.99□□□□□ -1.13
VPS33B-204ENST00000554660 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.99□□□□□ -1.13
VPS33B-204ENST00000554660 TMEM238C9JI98 176 aa7.99□□□□□ -1.13
VPS33B-204ENST00000554660 TSPAN13O95857 204 aa7.99□□□□□ -1.13
VPS33B-204ENST00000554660 ZNF22P17026 224 aaPredicted RBP7.99□□□□□ -1.13
VPS33B-204ENST00000554660 MRPS36P82909 103 aaKnown RBP7.99□□□□□ -1.13
VPS33B-204ENST00000554660 RPL24P83731 157 aaKnown RBP7.99□□□□□ -1.13
VPS33B-204ENST00000554660 FAM74A4Q5TZK3 123 aa7.99□□□□□ -1.13
VPS33B-204ENST00000554660 CFAP126Q5VTH2 177 aa7.99□□□□□ -1.13
VPS33B-204ENST00000554660 LINC01600Q96MT4 127 aa7.99□□□□□ -1.13
VPS33B-204ENST00000554660 C21orf62-AS1Q17RA5 79 aa7.98□□□□□ -1.13
VPS33B-204ENST00000554660 TIMM21Q9BVV7 248 aa7.98□□□□□ -1.13
VPS33B-204ENST00000554660 TRAV12-2A0A075B6T6 113 aa7.97□□□□□ -1.13
VPS33B-204ENST00000554660 WFDC2Q14508 124 aa7.97□□□□□ -1.13
VPS33B-204ENST00000554660 Q8N1X5 172 aa7.97□□□□□ -1.13
VPS33B-204ENST00000554660 PRO1854Q9UHT4 67 aa7.97□□□□□ -1.13
VPS33B-204ENST00000554660 TINCRA0A1B0GVN0 87 aa7.96□□□□□ -1.14
VPS33B-204ENST00000554660 SMIM9A6NGZ8 99 aa7.96□□□□□ -1.14
VPS33B-204ENST00000554660 TIMM17BO60830 172 aa7.96□□□□□ -1.14
VPS33B-204ENST00000554660 IGHV3-53P01767 116 aa7.96□□□□□ -1.14
VPS33B-204ENST00000554660 TSPEAR-AS2P59090 65 aa7.96□□□□□ -1.14
VPS33B-204ENST00000554660 TNFRSF18Q9Y5U5 241 aa7.96□□□□□ -1.14
VPS33B-204ENST00000554660 RS1O15537 224 aa7.95□□□□□ -1.14
VPS33B-204ENST00000554660 INSP01308 110 aa7.95□□□□□ -1.14
VPS33B-204ENST00000554660 CFC1BP0CG36 223 aa7.95□□□□□ -1.14
VPS33B-204ENST00000554660 CFC1P0CG37 223 aa7.95□□□□□ -1.14
VPS33B-204ENST00000554660 SMAGPQ0VAQ4 97 aa7.95□□□□□ -1.14
VPS33B-204ENST00000554660 C6orf223Q8N319 242 aa7.95□□□□□ -1.14
VPS33B-204ENST00000554660 SIGMAR1Q99720 223 aa7.95□□□□□ -1.14
VPS33B-204ENST00000554660 SPANXDQ9BXN6 97 aa7.95□□□□□ -1.14
VPS33B-204ENST00000554660 PPDPFQ9H3Y8 114 aa7.95□□□□□ -1.14
VPS33B-204ENST00000554660 SPANXCQ9NY87 97 aa7.95□□□□□ -1.14
VPS33B-204ENST00000554660 A0A0J9YXY3 114 aa7.94□□□□□ -1.14
VPS33B-204ENST00000554660 NBDYA0A0U1RRE5 68 aa7.94□□□□□ -1.14
VPS33B-204ENST00000554660 GAGE12HA6NDE8 117 aa7.94□□□□□ -1.14
VPS33B-204ENST00000554660 DAD1P61803 113 aa7.94□□□□□ -1.14
VPS33B-204ENST00000554660 ETDBQ3ZM63 59 aa7.94□□□□□ -1.14
VPS33B-204ENST00000554660 C1orf158Q8N1D5 194 aa7.94□□□□□ -1.14
VPS33B-204ENST00000554660 C11orf72Q8NBR9 251 aa7.94□□□□□ -1.14
VPS33B-204ENST00000554660 IGLV5-45A0A087WSX0 123 aa7.93□□□□□ -1.14
VPS33B-204ENST00000554660 IGHV1-58A0A0C4DH39 117 aa7.93□□□□□ -1.14
VPS33B-204ENST00000554660 CIDEAO60543 219 aa7.93□□□□□ -1.14
VPS33B-204ENST00000554660 APOMO95445 188 aa7.93□□□□□ -1.14
VPS33B-204ENST00000554660 TIRAPP58753 221 aa7.93□□□□□ -1.14
VPS33B-204ENST00000554660 FAM19A3Q7Z5A8 133 aa7.93□□□□□ -1.14
VPS33B-204ENST00000554660 TEN1Q86WV5 123 aa7.93□□□□□ -1.14
VPS33B-204ENST00000554660 PPDPFLQ8WWR9 84 aa7.93□□□□□ -1.14
VPS33B-204ENST00000554660 A0A0J9YXV3 536 aa7.92□□□□□ -1.14
VPS33B-204ENST00000554660 TRBV10-1A0A0K0K1A3 114 aa7.92□□□□□ -1.14
VPS33B-204ENST00000554660 IGHV3-33P01772 117 aa7.92□□□□□ -1.14
VPS33B-204ENST00000554660 IFITM1P13164 125 aa7.92□□□□□ -1.14
VPS33B-204ENST00000554660 FOXI1Q12951 378 aa7.92□□□□□ -1.14
VPS33B-204ENST00000554660 C15orf53Q8NAA6 179 aa7.92□□□□□ -1.14
VPS33B-204ENST00000554660 TMEM263Q8WUH6 116 aaKnown RBP7.92□□□□□ -1.14
VPS33B-204ENST00000554660 CHCHD7Q9BUK0 85 aa7.92□□□□□ -1.14
VPS33B-204ENST00000554660 UBE2D4Q9Y2X8 147 aa7.92□□□□□ -1.14
VPS33B-204ENST00000554660 CSDC2Q9Y534 153 aaKnown RBP7.92□□□□□ -1.14
VPS33B-204ENST00000554660 LOC107984156A0A0G2JMH3 177 aa7.91□□□□□ -1.14
VPS33B-204ENST00000554660 A4D1N5 150 aa7.91□□□□□ -1.14
VPS33B-204ENST00000554660 IGHV3-30-3P0DP02 117 aa7.91□□□□□ -1.14
VPS33B-204ENST00000554660 ARL17AQ8IVW1 177 aa7.91□□□□□ -1.14
VPS33B-204ENST00000554660 FAM104AQ969W3 186 aa7.91□□□□□ -1.14
VPS33B-204ENST00000554660 ERG28Q9UKR5 140 aa7.91□□□□□ -1.14
VPS33B-204ENST00000554660 TRBV30A0A0K0K1B3 111 aa7.9□□□□□ -1.14
VPS33B-204ENST00000554660 PRM2P04554 102 aa7.9□□□□□ -1.14
VPS33B-204ENST00000554660 PSMB2P49721 201 aa7.9□□□□□ -1.14
VPS33B-204ENST00000554660 SMCPP49901 116 aaPredicted RBP7.9□□□□□ -1.14
VPS33B-204ENST00000554660 COPS9Q8WXC6 57 aa7.9□□□□□ -1.14
VPS33B-204ENST00000554660 VSIG2Q96IQ7 327 aa7.9□□□□□ -1.14
VPS33B-204ENST00000554660 LITAFQ99732 161 aa7.9□□□□□ -1.14
VPS33B-204ENST00000554660 TMEM262E9PQX1 116 aa7.89□□□□□ -1.15
VPS33B-204ENST00000554660 TCL1BO95988 128 aa7.89□□□□□ -1.15
VPS33B-204ENST00000554660 DEFB130BP0DP73 79 aa7.89□□□□□ -1.15
VPS33B-204ENST00000554660 DEFB130AP0DP74 79 aa7.89□□□□□ -1.15
VPS33B-204ENST00000554660 KRTAP10-2P60368 255 aa7.89□□□□□ -1.15
VPS33B-204ENST00000554660 SH2D6Q7Z4S9 175 aa7.89□□□□□ -1.15
VPS33B-204ENST00000554660 OPRPNQ99935 248 aaPredicted RBP7.89□□□□□ -1.15
VPS33B-204ENST00000554660 LINC00588Q9Y4M8 146 aa7.89□□□□□ -1.15
VPS33B-204ENST00000554660 F5H768 121 aa7.88□□□□□ -1.15
VPS33B-204ENST00000554660 MIAQ16674 131 aa7.88□□□□□ -1.15
VPS33B-204ENST00000554660 MUSTN1Q8IVN3 82 aa7.88□□□□□ -1.15
VPS33B-204ENST00000554660 LINC01587Q99440 93 aa7.88□□□□□ -1.15
VPS33B-204ENST00000554660 KRTAP1-5Q9BYS1 174 aa7.88□□□□□ -1.15
VPS33B-204ENST00000554660 FAT1Q14517 4588 aa7.88□□□□□ -1.15
VPS33B-204ENST00000554660 NDUFA1O15239 70 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms