RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 COX6A2Q02221 97 aa8.07□□□□□ -1.12
SHMT2-209ENST00000553949 FAM19A3Q7Z5A8 133 aa8.07□□□□□ -1.12
SHMT2-209ENST00000553949 PKD1P98161 4303 aa8.07□□□□□ -1.12
SHMT2-209ENST00000553949 A0A0J9YXV3 536 aa8.06□□□□□ -1.12
SHMT2-209ENST00000553949 COX7A2LO14548 114 aa8.06□□□□□ -1.12
SHMT2-209ENST00000553949 EREGO14944 169 aa8.06□□□□□ -1.12
SHMT2-209ENST00000553949 S100A6P06703 90 aa8.06□□□□□ -1.12
SHMT2-209ENST00000553949 SEC11AP67812 179 aa8.06□□□□□ -1.12
SHMT2-209ENST00000553949 C5orf38Q86SI9 138 aa8.06□□□□□ -1.12
SHMT2-209ENST00000553949 TRAV12-1A0A0B4J245 112 aa8.05□□□□□ -1.12
SHMT2-209ENST00000553949 TINCRA0A1B0GVN0 87 aa8.05□□□□□ -1.12
SHMT2-209ENST00000553949 HERVK_113P63121 156 aa8.05□□□□□ -1.12
SHMT2-209ENST00000553949 CFAP161Q6P656 301 aa8.05□□□□□ -1.12
SHMT2-209ENST00000553949 Q8N814 137 aa8.05□□□□□ -1.12
SHMT2-209ENST00000553949 PACRGQ96M98 296 aaPredicted RBP8.05□□□□□ -1.12
SHMT2-209ENST00000553949 GEMIN7Q9H840 131 aaKnown RBP8.05□□□□□ -1.12
SHMT2-209ENST00000553949 A0A1B0GVY2 172 aa8.04□□□□□ -1.12
SHMT2-209ENST00000553949 IGLC3P0DOY3 106 aa8.04□□□□□ -1.12
SHMT2-209ENST00000553949 MALP21145 153 aa8.04□□□□□ -1.12
SHMT2-209ENST00000553949 C14orf177Q52M58 125 aa8.04□□□□□ -1.12
SHMT2-209ENST00000553949 C15orf56Q8N910 161 aa8.04□□□□□ -1.12
SHMT2-209ENST00000553949 MAP1LC3CQ9BXW4 147 aa8.04□□□□□ -1.12
SHMT2-209ENST00000553949 CHTOPQ9Y3Y2 248 aaKnown RBP8.04□□□□□ -1.12
SHMT2-209ENST00000553949 HECTD4Q9Y4D8 3996 aa8.03□□□□□ -1.12
SHMT2-209ENST00000553949 IGLV4-69A0A075B6H9 119 aa8.03□□□□□ -1.12
SHMT2-209ENST00000553949 A0A087WZ39 114 aa8.03□□□□□ -1.12
SHMT2-209ENST00000553949 IGHV1-58A0A0C4DH39 117 aa8.03□□□□□ -1.12
SHMT2-209ENST00000553949 H0Y8G0 127 aa8.03□□□□□ -1.12
SHMT2-209ENST00000553949 HIST3H2BBQ8N257 126 aa8.03□□□□□ -1.12
SHMT2-209ENST00000553949 CDKN2A-AS1Q9UH64 79 aa8.03□□□□□ -1.12
SHMT2-209ENST00000553949 DYNC1H1Q14204 4646 aaKnown RBP8.02□□□□□ -1.13
SHMT2-209ENST00000553949 DNAH5Q8TE73 4624 aa8.02□□□□□ -1.13
SHMT2-209ENST00000553949 IGLV5-45A0A087WSX0 123 aa8.02□□□□□ -1.13
SHMT2-209ENST00000553949 SNRPEP62304 92 aaKnown RBP8.02□□□□□ -1.13
SHMT2-209ENST00000553949 LINC00469Q8N7U9 141 aa8.02□□□□□ -1.13
SHMT2-209ENST00000553949 CHAC1Q9BUX1 264 aa8.02□□□□□ -1.13
SHMT2-209ENST00000553949 EPPK1P58107 5090 aaKnown RBP8.01□□□□□ -1.13
SHMT2-209ENST00000553949 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.01□□□□□ -1.13
SHMT2-209ENST00000553949 IGHV3-64A0A075B6Q5 118 aa8.01□□□□□ -1.13
SHMT2-209ENST00000553949 GVQW2A0A096LPI5 108 aaPredicted RBP8.01□□□□□ -1.13
SHMT2-209ENST00000553949 hDV102S1A0JD36 115 aa8.01□□□□□ -1.13
SHMT2-209ENST00000553949 F8VRH5 84 aa8.01□□□□□ -1.13
SHMT2-209ENST00000553949 APOMO95445 188 aa8.01□□□□□ -1.13
SHMT2-209ENST00000553949 S100A2P29034 98 aa8.01□□□□□ -1.13
SHMT2-209ENST00000553949 KRTAP10-2P60368 255 aa8.01□□□□□ -1.13
SHMT2-209ENST00000553949 ODF1Q14990 250 aa8.01□□□□□ -1.13
SHMT2-209ENST00000553949 HIGD2BQ4VC39 106 aa8.01□□□□□ -1.13
SHMT2-209ENST00000553949 SPATA12Q7Z6I5 190 aa8.01□□□□□ -1.13
SHMT2-209ENST00000553949 LINC01561Q8N1V8 128 aa8.01□□□□□ -1.13
SHMT2-209ENST00000553949 MRPL35Q9NZE8 188 aaKnown RBP8.01□□□□□ -1.13
SHMT2-209ENST00000553949 C5orf52A6NGY3 159 aa8□□□□□ -1.13
SHMT2-209ENST00000553949 C11orf86A6NJI1 115 aa8□□□□□ -1.13
SHMT2-209ENST00000553949 SYS1-DBNDD2H3BUS1 97 aa8□□□□□ -1.13
SHMT2-209ENST00000553949 FUSP35637 526 aaKnown RBP eCLIP8□□□□□ -1.13
SHMT2-209ENST00000553949 NTN5Q8WTR8 489 aaPredicted RBP8□□□□□ -1.13
SHMT2-209ENST00000553949 ORAOV1Q8WV07 137 aa8□□□□□ -1.13
SHMT2-209ENST00000553949 HIST1H2BLQ99880 126 aa8□□□□□ -1.13
SHMT2-209ENST00000553949 PGPEP1Q9NXJ5 209 aa8□□□□□ -1.13
SHMT2-209ENST00000553949 PKHD1P08F94 4074 aa7.99□□□□□ -1.13
SHMT2-209ENST00000553949 H3BRM9 83 aa7.99□□□□□ -1.13
SHMT2-209ENST00000553949 ZNF561-AS1K7EIQ3 104 aa7.99□□□□□ -1.13
SHMT2-209ENST00000553949 ZNF22P17026 224 aaPredicted RBP7.99□□□□□ -1.13
SHMT2-209ENST00000553949 OR10D4PQ8NGN7 298 aa7.99□□□□□ -1.13
SHMT2-209ENST00000553949 LINC00526Q96FQ7 95 aa7.99□□□□□ -1.13
SHMT2-209ENST00000553949 IGLV5-52A0A0A0MRZ9 124 aa7.98□□□□□ -1.13
SHMT2-209ENST00000553949 C3orf79P0CE67 100 aa7.98□□□□□ -1.13
SHMT2-209ENST00000553949 KRTDAPP60985 99 aa7.98□□□□□ -1.13
SHMT2-209ENST00000553949 SPAG11BQ08648 103 aa7.98□□□□□ -1.13
SHMT2-209ENST00000553949 PET117Q6UWS5 81 aa7.98□□□□□ -1.13
SHMT2-209ENST00000553949 PMCHL2Q9BQD1 86 aa7.98□□□□□ -1.13
SHMT2-209ENST00000553949 TMA7Q9Y2S6 64 aaKnown RBP7.98□□□□□ -1.13
SHMT2-209ENST00000553949 SMIM1B2RUZ4 78 aa7.97□□□□□ -1.13
SHMT2-209ENST00000553949 SLPIP03973 132 aa7.97□□□□□ -1.13
SHMT2-209ENST00000553949 SPINK8P0C7L1 97 aa7.97□□□□□ -1.13
SHMT2-209ENST00000553949 PLNP26678 52 aa7.97□□□□□ -1.13
SHMT2-209ENST00000553949 CNBPP62633 177 aaKnown RBP7.97□□□□□ -1.13
SHMT2-209ENST00000553949 TMEM170BQ5T4T1 132 aa7.97□□□□□ -1.13
SHMT2-209ENST00000553949 CDPF1Q6NVV7 123 aa7.97□□□□□ -1.13
SHMT2-209ENST00000553949 DPM2O94777 84 aa7.96□□□□□ -1.14
SHMT2-209ENST00000553949 LINC01545Q5VT33 79 aa7.96□□□□□ -1.14
SHMT2-209ENST00000553949 LRP1BQ9NZR2 4599 aa7.96□□□□□ -1.14
SHMT2-209ENST00000553949 IGKCP01834 107 aa7.95□□□□□ -1.14
SHMT2-209ENST00000553949 KIAA0087Q14695 138 aa7.95□□□□□ -1.14
SHMT2-209ENST00000553949 C2orf48Q96LS8 159 aa7.95□□□□□ -1.14
SHMT2-209ENST00000553949 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.94□□□□□ -1.14
SHMT2-209ENST00000553949 IGLV5-39A0A0G2JS06 123 aa7.94□□□□□ -1.14
SHMT2-209ENST00000553949 TMEM223A0PJW6 202 aa7.94□□□□□ -1.14
SHMT2-209ENST00000553949 C16orf90A8MZG2 172 aa7.94□□□□□ -1.14
SHMT2-209ENST00000553949 PRSS2P07478 247 aa7.94□□□□□ -1.14
SHMT2-209ENST00000553949 SYCNQ0VAF6 134 aa7.94□□□□□ -1.14
SHMT2-209ENST00000553949 Q8IZM0 81 aa7.94□□□□□ -1.14
SHMT2-209ENST00000553949 CAMK2N2Q96S95 79 aa7.94□□□□□ -1.14
SHMT2-209ENST00000553949 TOMM7Q9P0U1 55 aa7.94□□□□□ -1.14
SHMT2-209ENST00000553949 C20orf202A1L168 122 aa7.93□□□□□ -1.14
SHMT2-209ENST00000553949 F8WDY8 70 aa7.93□□□□□ -1.14
SHMT2-209ENST00000553949 GCSHP23434 173 aa7.93□□□□□ -1.14
SHMT2-209ENST00000553949 COX7B2Q8TF08 81 aa7.93□□□□□ -1.14
SHMT2-209ENST00000553949 CARD19Q96LW7 228 aa7.93□□□□□ -1.14
SHMT2-209ENST00000553949 NDUFA1O15239 70 aa7.92□□□□□ -1.14
SHMT2-209ENST00000553949 LINC01620Q4KN68 170 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 201 ms