RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 SMLR1H3BR10 107 aa7.43□□□□□ -1.22
VPS29-211ENST00000553128 KIAA0087Q14695 138 aa7.43□□□□□ -1.22
VPS29-211ENST00000553128 MED9Q9NWA0 146 aa7.43□□□□□ -1.22
VPS29-211ENST00000553128 NUPR1O60356 82 aa7.42□□□□□ -1.22
VPS29-211ENST00000553128 C2orf82Q6UX34 121 aa7.42□□□□□ -1.22
VPS29-211ENST00000553128 LINC00304Q8N9R0 145 aa7.42□□□□□ -1.22
VPS29-211ENST00000553128 FAM210AQ96ND0 272 aa7.42□□□□□ -1.22
VPS29-211ENST00000553128 PPDPFQ9H3Y8 114 aa7.42□□□□□ -1.22
VPS29-211ENST00000553128 BIN3Q9NQY0 253 aa7.42□□□□□ -1.22
VPS29-211ENST00000553128 C22orf24Q9Y442 160 aa7.42□□□□□ -1.22
VPS29-211ENST00000553128 NDUFC2-KCTD14E9PQ53 114 aa7.41□□□□□ -1.22
VPS29-211ENST00000553128 FCER1GP30273 86 aa7.41□□□□□ -1.22
VPS29-211ENST00000553128 LINC00242Q5T6M2 205 aa7.41□□□□□ -1.22
VPS29-211ENST00000553128 OCC1Q8TAD7 63 aa7.41□□□□□ -1.22
VPS29-211ENST00000553128 VCYO14598 125 aa7.4□□□□□ -1.22
VPS29-211ENST00000553128 RAB4AP20338 218 aa7.4□□□□□ -1.22
VPS29-211ENST00000553128 RPL39P62891 51 aaKnown RBP7.4□□□□□ -1.22
VPS29-211ENST00000553128 AMN1Q8IY45 258 aa7.39□□□□□ -1.23
VPS29-211ENST00000553128 LINC00469Q8N7U9 141 aa7.39□□□□□ -1.23
VPS29-211ENST00000553128 TRBV30A0A0K0K1B3 111 aa7.38□□□□□ -1.23
VPS29-211ENST00000553128 PDE6DO43924 150 aa7.38□□□□□ -1.23
VPS29-211ENST00000553128 BCE1O60756 84 aa7.38□□□□□ -1.23
VPS29-211ENST00000553128 RPL28P46779 137 aaKnown RBP7.38□□□□□ -1.23
VPS29-211ENST00000553128 ASB16-AS1Q495Z4 193 aa7.38□□□□□ -1.23
VPS29-211ENST00000553128 NRACQ8N912 160 aa7.38□□□□□ -1.23
VPS29-211ENST00000553128 TIMM21Q9BVV7 248 aa7.38□□□□□ -1.23
VPS29-211ENST00000553128 TMEM191AQ9H0A3 160 aa7.38□□□□□ -1.23
VPS29-211ENST00000553128 SMAGPQ0VAQ4 97 aa7.37□□□□□ -1.23
VPS29-211ENST00000553128 LCE2CQ5TA81 110 aa7.37□□□□□ -1.23
VPS29-211ENST00000553128 GATCO43716 136 aaKnown RBP7.36□□□□□ -1.23
VPS29-211ENST00000553128 SUMO2P61956 95 aaKnown RBP7.36□□□□□ -1.23
VPS29-211ENST00000553128 XAGE1AQ9HD64 81 aa7.36□□□□□ -1.23
VPS29-211ENST00000553128 ZNF345Q14585 488 aa7.35□□□□□ -1.23
VPS29-211ENST00000553128 KIR2DL4Q99706 377 aa7.35□□□□□ -1.23
VPS29-211ENST00000553128 RPL37AP8A6NKH3 93 aa7.34□□□□□ -1.23
VPS29-211ENST00000553128 IFITM10A6NMD0 228 aa7.34□□□□□ -1.23
VPS29-211ENST00000553128 LBHQ53QV2 105 aaPredicted RBP7.34□□□□□ -1.23
VPS29-211ENST00000553128 KRTAP13-1Q8IUC0 172 aa7.34□□□□□ -1.23
VPS29-211ENST00000553128 PACRGQ96M98 296 aaPredicted RBP7.34□□□□□ -1.23
VPS29-211ENST00000553128 TGIF2-C20orf24A0A0A6YYL0 155 aa7.33□□□□□ -1.24
VPS29-211ENST00000553128 ZNF727A8MUV8 499 aa7.33□□□□□ -1.24
VPS29-211ENST00000553128 A8MWL6 223 aa7.33□□□□□ -1.24
VPS29-211ENST00000553128 KRTAP13-3Q3SY46 172 aa7.33□□□□□ -1.24
VPS29-211ENST00000553128 FAM229BQ4G0N7 80 aa7.33□□□□□ -1.24
VPS29-211ENST00000553128 MRPL55Q7Z7F7 128 aaKnown RBP7.33□□□□□ -1.24
VPS29-211ENST00000553128 TMEM18Q96B42 140 aa7.33□□□□□ -1.24
VPS29-211ENST00000553128 A0A1B0GUT8 65 aa7.32□□□□□ -1.24
VPS29-211ENST00000553128 HIGD1CA8MV81 97 aa7.32□□□□□ -1.24
VPS29-211ENST00000553128 HBBP68871 147 aa7.32□□□□□ -1.24
VPS29-211ENST00000553128 KANTRA0A1W2PQU2 76 aa7.31□□□□□ -1.24
VPS29-211ENST00000553128 MRPS36P82909 103 aaKnown RBP7.31□□□□□ -1.24
VPS29-211ENST00000553128 FAM231DQ6ZW35 169 aa7.31□□□□□ -1.24
VPS29-211ENST00000553128 LINC00337Q8N6G1 96 aa7.31□□□□□ -1.24
VPS29-211ENST00000553128 BORCS7Q96B45 105 aa7.31□□□□□ -1.24
VPS29-211ENST00000553128 LINC00167Q96N53 147 aa7.31□□□□□ -1.24
VPS29-211ENST00000553128 SPANXA1Q9NS26 97 aa7.31□□□□□ -1.24
VPS29-211ENST00000553128 IGKV2D-26A0A0A0MRZ7 120 aa7.3□□□□□ -1.24
VPS29-211ENST00000553128 GAGE10A6NGK3 116 aa7.3□□□□□ -1.24
VPS29-211ENST00000553128 KRTAP19-2Q3LHN2 52 aa7.3□□□□□ -1.24
VPS29-211ENST00000553128 C3orf22Q8N5N4 141 aa7.3□□□□□ -1.24
VPS29-211ENST00000553128 TP73-AS1Q9UF72 201 aa7.3□□□□□ -1.24
VPS29-211ENST00000553128 MT1HP80294 61 aa7.29□□□□□ -1.24
VPS29-211ENST00000553128 MRPL51Q4U2R6 128 aaKnown RBP7.29□□□□□ -1.24
VPS29-211ENST00000553128 CT83Q5H943 113 aa7.29□□□□□ -1.24
VPS29-211ENST00000553128 HMSDA8MTL9 139 aa7.28□□□□□ -1.24
VPS29-211ENST00000553128 KRTAP9-7A8MTY7 169 aa7.28□□□□□ -1.24
VPS29-211ENST00000553128 TEX46H3BTG2 121 aa7.28□□□□□ -1.24
VPS29-211ENST00000553128 PPP1R2P9O14990 202 aa7.28□□□□□ -1.24
VPS29-211ENST00000553128 UBE2AP49459 152 aa7.28□□□□□ -1.24
VPS29-211ENST00000553128 TCAPO15273 167 aa7.27□□□□□ -1.25
VPS29-211ENST00000553128 PPP1R17O96001 155 aa7.27□□□□□ -1.25
VPS29-211ENST00000553128 SEC61BP60468 96 aaKnown RBP7.27□□□□□ -1.25
VPS29-211ENST00000553128 CTAG1AP78358 180 aa7.27□□□□□ -1.25
VPS29-211ENST00000553128 TOMM7Q9P0U1 55 aa7.27□□□□□ -1.25
VPS29-211ENST00000553128 RPL32P62910 135 aaKnown RBP7.26□□□□□ -1.25
VPS29-211ENST00000553128 ZC2HC1BQ5TFG8 222 aa7.26□□□□□ -1.25
VPS29-211ENST00000553128 FP248Q71RG6 208 aaPredicted RBP7.26□□□□□ -1.25
VPS29-211ENST00000553128 C20orf78Q9BR46 151 aa7.26□□□□□ -1.25
VPS29-211ENST00000553128 IGLV4-3A0A075B6K6 122 aa7.25□□□□□ -1.25
VPS29-211ENST00000553128 LORP23490 312 aaPredicted RBP7.25□□□□□ -1.25
VPS29-211ENST00000553128 CKS1BP61024 79 aa7.25□□□□□ -1.25
VPS29-211ENST00000553128 FAM104BQ5XKR9 115 aa7.25□□□□□ -1.25
VPS29-211ENST00000553128 SMIM2Q9BVW6 85 aa7.25□□□□□ -1.25
VPS29-211ENST00000553128 TRBV24-1A0A075B6N3 115 aa7.24□□□□□ -1.25
VPS29-211ENST00000553128 SCO1O75880 301 aa7.24□□□□□ -1.25
VPS29-211ENST00000553128 PRLHP81277 87 aa7.24□□□□□ -1.25
VPS29-211ENST00000553128 PNRC1Q12796 327 aaPredicted RBP7.24□□□□□ -1.25
VPS29-211ENST00000553128 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.23□□□□□ -1.25
VPS29-211ENST00000553128 TNFRSF6BO95407 300 aa7.23□□□□□ -1.25
VPS29-211ENST00000553128 PRSS2P07478 247 aa7.23□□□□□ -1.25
VPS29-211ENST00000553128 RIGQ13278 110 aa7.23□□□□□ -1.25
VPS29-211ENST00000553128 C6orf226Q5I0X4 101 aa7.23□□□□□ -1.25
VPS29-211ENST00000553128 LINC01561Q8N1V8 128 aa7.23□□□□□ -1.25
VPS29-211ENST00000553128 IGKV2-28A0A075B6P5 120 aa7.22□□□□□ -1.25
VPS29-211ENST00000553128 IGKV2D-28P01615 120 aa7.22□□□□□ -1.25
VPS29-211ENST00000553128 CKS2P33552 79 aa7.22□□□□□ -1.25
VPS29-211ENST00000553128 IFI27P40305 119 aaPredicted RBP7.22□□□□□ -1.25
VPS29-211ENST00000553128 CEBPGP53567 150 aa7.22□□□□□ -1.25
VPS29-211ENST00000553128 KRTAP10-6P60371 365 aaPredicted RBP7.22□□□□□ -1.25
VPS29-211ENST00000553128 Q8IZM0 81 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms