RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 ZC2HC1BQ5TFG8 222 aa6.39□□□□□ -1.39
LIMA1-211ENST00000552338 Q6ZRN7 208 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-211ENST00000552338 UBE2WQ96B02 151 aa6.39□□□□□ -1.39
LIMA1-211ENST00000552338 RMI2Q96E14 147 aa6.39□□□□□ -1.39
LIMA1-211ENST00000552338 KRTAP4-6Q9BYQ5 205 aa6.39□□□□□ -1.39
LIMA1-211ENST00000552338 CHTOPQ9Y3Y2 248 aaKnown RBP6.39□□□□□ -1.39
LIMA1-211ENST00000552338 A0A087WZ39 114 aa6.38□□□□□ -1.39
LIMA1-211ENST00000552338 TRAV13-1A0A0B4J241 112 aa6.38□□□□□ -1.39
LIMA1-211ENST00000552338 FOXI1Q12951 378 aa6.38□□□□□ -1.39
LIMA1-211ENST00000552338 OR10D4PQ8NGN7 298 aa6.38□□□□□ -1.39
LIMA1-211ENST00000552338 CHCHD10Q8WYQ3 142 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-211ENST00000552338 TM2D2Q9BX73 214 aa6.38□□□□□ -1.39
LIMA1-211ENST00000552338 MRPL35Q9NZE8 188 aaKnown RBP6.38□□□□□ -1.39
LIMA1-211ENST00000552338 A0A0J9YXV3 536 aa6.37□□□□□ -1.39
LIMA1-211ENST00000552338 PLNP26678 52 aa6.37□□□□□ -1.39
LIMA1-211ENST00000552338 COX6A2Q02221 97 aa6.37□□□□□ -1.39
LIMA1-211ENST00000552338 JOSD1Q15040 202 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-211ENST00000552338 C1orf43Q9BWL3 253 aa6.37□□□□□ -1.39
LIMA1-211ENST00000552338 LOC105371267A0A1B0GV96 52 aa6.36□□□□□ -1.39
LIMA1-211ENST00000552338 C11orf86A6NJI1 115 aa6.36□□□□□ -1.39
LIMA1-211ENST00000552338 DPM2O94777 84 aa6.36□□□□□ -1.39
LIMA1-211ENST00000552338 ZNF22P17026 224 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-211ENST00000552338 KRTDAPP60985 99 aa6.36□□□□□ -1.39
LIMA1-211ENST00000552338 C6orf223Q8N319 242 aa6.36□□□□□ -1.39
LIMA1-211ENST00000552338 C20orf202A1L168 122 aa6.35□□□□□ -1.39
LIMA1-211ENST00000552338 IGKCP01834 107 aa6.35□□□□□ -1.39
LIMA1-211ENST00000552338 CLPSL2Q6UWE3 100 aa6.35□□□□□ -1.39
LIMA1-211ENST00000552338 MAPKAPK5-AS1Q8N8E1 139 aa6.35□□□□□ -1.39
LIMA1-211ENST00000552338 CHAC1Q9BUX1 264 aa6.35□□□□□ -1.39
LIMA1-211ENST00000552338 GEMIN7Q9H840 131 aaKnown RBP6.35□□□□□ -1.39
LIMA1-211ENST00000552338 CDKN2A-AS1Q9UH64 79 aa6.35□□□□□ -1.39
LIMA1-211ENST00000552338 SACSQ9NZJ4 4579 aa6.34□□□□□ -1.39
LIMA1-211ENST00000552338 IGKV2D-24A0A075B6R9 120 aa6.34□□□□□ -1.39
LIMA1-211ENST00000552338 IGLV5-39A0A0G2JS06 123 aa6.34□□□□□ -1.39
LIMA1-211ENST00000552338 TMEM223A0PJW6 202 aa6.34□□□□□ -1.39
LIMA1-211ENST00000552338 GAGE12HA6NDE8 117 aa6.34□□□□□ -1.39
LIMA1-211ENST00000552338 TNP2Q05952 138 aa6.34□□□□□ -1.39
LIMA1-211ENST00000552338 C1orf134Q5TEV5 83 aa6.34□□□□□ -1.39
LIMA1-211ENST00000552338 IGLV10-54A0A075B6I4 117 aa6.33□□□□□ -1.4
LIMA1-211ENST00000552338 IGHV3-64A0A075B6Q5 118 aa6.33□□□□□ -1.4
LIMA1-211ENST00000552338 IGKV3OR2-268A0A0C4DH90 116 aa6.33□□□□□ -1.4
LIMA1-211ENST00000552338 LRCOL1A6NCL2 159 aa6.33□□□□□ -1.4
LIMA1-211ENST00000552338 F8WDY8 70 aa6.33□□□□□ -1.4
LIMA1-211ENST00000552338 H3BRM9 83 aa6.33□□□□□ -1.4
LIMA1-211ENST00000552338 COX7A2LO14548 114 aa6.33□□□□□ -1.4
LIMA1-211ENST00000552338 EREGO14944 169 aa6.33□□□□□ -1.4
LIMA1-211ENST00000552338 XCL1P47992 114 aa6.33□□□□□ -1.4
LIMA1-211ENST00000552338 PYY3Q5JQD4 70 aa6.33□□□□□ -1.4
LIMA1-211ENST00000552338 IGHV1-58A0A0C4DH39 117 aa6.32□□□□□ -1.4
LIMA1-211ENST00000552338 SMIM1B2RUZ4 78 aa6.32□□□□□ -1.4
LIMA1-211ENST00000552338 H0Y8G0 127 aa6.32□□□□□ -1.4
LIMA1-211ENST00000552338 APOMO95445 188 aa6.32□□□□□ -1.4
LIMA1-211ENST00000552338 CFAP161Q6P656 301 aa6.32□□□□□ -1.4
LIMA1-211ENST00000552338 Q9HAA7 133 aa6.32□□□□□ -1.4
LIMA1-211ENST00000552338 GVQW2A0A096LPI5 108 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-211ENST00000552338 E9PLD3 99 aa6.31□□□□□ -1.4
LIMA1-211ENST00000552338 M0R2N4 97 aa6.31□□□□□ -1.4
LIMA1-211ENST00000552338 KIAA0087Q14695 138 aa6.31□□□□□ -1.4
LIMA1-211ENST00000552338 C5orf38Q86SI9 138 aa6.31□□□□□ -1.4
LIMA1-211ENST00000552338 Q8IZM0 81 aa6.31□□□□□ -1.4
LIMA1-211ENST00000552338 LINC00469Q8N7U9 141 aa6.31□□□□□ -1.4
LIMA1-211ENST00000552338 C15orf56Q8N910 161 aa6.31□□□□□ -1.4
LIMA1-211ENST00000552338 PMCHL2Q9BQD1 86 aa6.31□□□□□ -1.4
LIMA1-211ENST00000552338 RTL8CO15255 209 aa6.3□□□□□ -1.4
LIMA1-211ENST00000552338 TMEM170BQ5T4T1 132 aa6.3□□□□□ -1.4
LIMA1-211ENST00000552338 LEPROTO15243 131 aa6.29□□□□□ -1.4
LIMA1-211ENST00000552338 SCGB1D1O95968 90 aa6.29□□□□□ -1.4
LIMA1-211ENST00000552338 C14orf177Q52M58 125 aa6.29□□□□□ -1.4
LIMA1-211ENST00000552338 SFTA2Q6UW10 78 aa6.29□□□□□ -1.4
LIMA1-211ENST00000552338 LINC00336Q6ZUF6 198 aa6.29□□□□□ -1.4
LIMA1-211ENST00000552338 C2orf48Q96LS8 159 aa6.29□□□□□ -1.4
LIMA1-211ENST00000552338 HYDINQ4G0P3 5121 aa6.29□□□□□ -1.4
LIMA1-211ENST00000552338 USP17L23D6RBM5 183 aa6.28□□□□□ -1.4
LIMA1-211ENST00000552338 PSCAO43653 123 aa6.28□□□□□ -1.4
LIMA1-211ENST00000552338 SMIM6P0DI80 62 aa6.28□□□□□ -1.4
LIMA1-211ENST00000552338 MALP21145 153 aa6.28□□□□□ -1.4
LIMA1-211ENST00000552338 CXCL5P42830 114 aa6.28□□□□□ -1.4
LIMA1-211ENST00000552338 HERVK_113P61574 105 aa6.28□□□□□ -1.4
LIMA1-211ENST00000552338 NTN5Q8WTR8 489 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-211ENST00000552338 PLEKHB2Q96CS7 222 aa6.28□□□□□ -1.4
LIMA1-211ENST00000552338 DNAH2Q9P225 4427 aa6.27□□□□□ -1.41
LIMA1-211ENST00000552338 A0A087WTM6 91 aa6.27□□□□□ -1.41
LIMA1-211ENST00000552338 SPINK8P0C7L1 97 aa6.27□□□□□ -1.41
LIMA1-211ENST00000552338 NMUP48645 174 aa6.27□□□□□ -1.41
LIMA1-211ENST00000552338 CNBPP62633 177 aaKnown RBP6.27□□□□□ -1.41
LIMA1-211ENST00000552338 WFDC2Q14508 124 aa6.27□□□□□ -1.41
LIMA1-211ENST00000552338 RNF151Q2KHN1 245 aa6.27□□□□□ -1.41
LIMA1-211ENST00000552338 STPG4Q8N801 248 aa6.27□□□□□ -1.41
LIMA1-211ENST00000552338 COX7B2Q8TF08 81 aa6.27□□□□□ -1.41
LIMA1-211ENST00000552338 KMT2CQ8NEZ4 4911 aaKnown RBP6.27□□□□□ -1.41
LIMA1-211ENST00000552338 DNAH10Q8IVF4 4471 aa6.26□□□□□ -1.41
LIMA1-211ENST00000552338 ORAOV1Q8WV07 137 aa6.26□□□□□ -1.41
LIMA1-211ENST00000552338 ZNF625Q96I27 306 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-211ENST00000552338 DNAH17Q9UFH2 4485 aa6.26□□□□□ -1.41
LIMA1-211ENST00000552338 FRAS1Q86XX4 4008 aa6.26□□□□□ -1.41
LIMA1-211ENST00000552338 IGKV2D-26A0A0A0MRZ7 120 aa6.25□□□□□ -1.41
LIMA1-211ENST00000552338 hDV102S1A0JD36 115 aa6.25□□□□□ -1.41
LIMA1-211ENST00000552338 HSBP1L1C9JCN9 74 aa6.25□□□□□ -1.41
LIMA1-211ENST00000552338 J3QQQ9 107 aa6.25□□□□□ -1.41
LIMA1-211ENST00000552338 ZNF561-AS1K7EIQ3 104 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms