RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 SACSQ9NZJ4 4579 aa10.73□□□□□ -0.69
PRPF40A-212ENST00000545856 CLPSL2Q6UWE3 100 aa10.73□□□□□ -0.69
PRPF40A-212ENST00000545856 IGKV3OR2-268A0A0C4DH90 116 aa10.72□□□□□ -0.69
PRPF40A-212ENST00000545856 A0A0J9YXV3 536 aa10.72□□□□□ -0.69
PRPF40A-212ENST00000545856 H0Y8G0 127 aa10.72□□□□□ -0.69
PRPF40A-212ENST00000545856 IGKCP01834 107 aa10.72□□□□□ -0.69
PRPF40A-212ENST00000545856 KMT2AQ03164 3969 aa10.72□□□□□ -0.69
PRPF40A-212ENST00000545856 IGKV2D-24A0A075B6R9 120 aa10.71□□□□□ -0.69
PRPF40A-212ENST00000545856 A0A087WZ39 114 aa10.71□□□□□ -0.69
PRPF40A-212ENST00000545856 C11orf86A6NJI1 115 aa10.71□□□□□ -0.69
PRPF40A-212ENST00000545856 COX7A2LO14548 114 aa10.71□□□□□ -0.69
PRPF40A-212ENST00000545856 JOSD1Q15040 202 aaPredicted RBP10.71□□□□□ -0.69
PRPF40A-212ENST00000545856 ZC2HC1BQ5TFG8 222 aa10.71□□□□□ -0.69
PRPF40A-212ENST00000545856 C6orf223Q8N319 242 aa10.71□□□□□ -0.69
PRPF40A-212ENST00000545856 APOMO95445 188 aa10.7□□□□□ -0.7
PRPF40A-212ENST00000545856 XCL1P47992 114 aa10.7□□□□□ -0.7
PRPF40A-212ENST00000545856 FOXI1Q12951 378 aa10.7□□□□□ -0.7
PRPF40A-212ENST00000545856 KRTAP26-1Q6PEX3 210 aa10.7□□□□□ -0.7
PRPF40A-212ENST00000545856 Q9HAA7 133 aa10.7□□□□□ -0.7
PRPF40A-212ENST00000545856 ZNF22P17026 224 aaPredicted RBP10.69□□□□□ -0.7
PRPF40A-212ENST00000545856 HERVK_113P61574 105 aa10.69□□□□□ -0.7
PRPF40A-212ENST00000545856 CFAP161Q6P656 301 aa10.69□□□□□ -0.7
PRPF40A-212ENST00000545856 LINC00469Q8N7U9 141 aa10.69□□□□□ -0.7
PRPF40A-212ENST00000545856 IGLV10-54A0A075B6I4 117 aa10.68□□□□□ -0.7
PRPF40A-212ENST00000545856 GAGE12HA6NDE8 117 aa10.68□□□□□ -0.7
PRPF40A-212ENST00000545856 C1orf134Q5TEV5 83 aa10.68□□□□□ -0.7
PRPF40A-212ENST00000545856 SCGB1D1O95968 90 aa10.67□□□□□ -0.7
PRPF40A-212ENST00000545856 CDKN2A-AS1Q9UH64 79 aa10.67□□□□□ -0.7
PRPF40A-212ENST00000545856 DNAH2Q9P225 4427 aa10.67□□□□□ -0.7
PRPF40A-212ENST00000545856 IGHV1-58A0A0C4DH39 117 aa10.66□□□□□ -0.7
PRPF40A-212ENST00000545856 PSCAO43653 123 aa10.66□□□□□ -0.7
PRPF40A-212ENST00000545856 C14orf177Q52M58 125 aa10.66□□□□□ -0.7
PRPF40A-212ENST00000545856 TMEM170BQ5T4T1 132 aa10.66□□□□□ -0.7
PRPF40A-212ENST00000545856 SFTA2Q6UW10 78 aa10.66□□□□□ -0.7
PRPF40A-212ENST00000545856 Q6ZRN7 208 aaPredicted RBP10.66□□□□□ -0.7
PRPF40A-212ENST00000545856 F8WDY8 70 aa10.65□□□□□ -0.7
PRPF40A-212ENST00000545856 MALP21145 153 aa10.65□□□□□ -0.7
PRPF40A-212ENST00000545856 COX6A2Q02221 97 aa10.65□□□□□ -0.7
PRPF40A-212ENST00000545856 TMEM223A0PJW6 202 aa10.65□□□□□ -0.71
PRPF40A-212ENST00000545856 HSBP1L1C9JCN9 74 aa10.65□□□□□ -0.71
PRPF40A-212ENST00000545856 IGHV3-64A0A075B6Q5 118 aa10.64□□□□□ -0.71
PRPF40A-212ENST00000545856 IGLV5-39A0A0G2JS06 123 aa10.64□□□□□ -0.71
PRPF40A-212ENST00000545856 M0R2N4 97 aa10.64□□□□□ -0.71
PRPF40A-212ENST00000545856 SMIM6P0DI80 62 aa10.64□□□□□ -0.71
PRPF40A-212ENST00000545856 PMCHL2Q9BQD1 86 aa10.64□□□□□ -0.71
PRPF40A-212ENST00000545856 KMT2CQ8NEZ4 4911 aaKnown RBP10.63□□□□□ -0.71
PRPF40A-212ENST00000545856 LOC105371267A0A1B0GV96 52 aa10.63□□□□□ -0.71
PRPF40A-212ENST00000545856 SMIM1B2RUZ4 78 aa10.63□□□□□ -0.71
PRPF40A-212ENST00000545856 GVQW2A0A096LPI5 108 aaPredicted RBP10.62□□□□□ -0.71
PRPF40A-212ENST00000545856 E9PLD3 99 aa10.62□□□□□ -0.71
PRPF40A-212ENST00000545856 CXCL5P42830 114 aa10.62□□□□□ -0.71
PRPF40A-212ENST00000545856 PYY3Q5JQD4 70 aa10.62□□□□□ -0.71
PRPF40A-212ENST00000545856 C5orf38Q86SI9 138 aa10.62□□□□□ -0.71
PRPF40A-212ENST00000545856 Q8IZM0 81 aa10.62□□□□□ -0.71
PRPF40A-212ENST00000545856 PLEKHB2Q96CS7 222 aa10.61□□□□□ -0.71
PRPF40A-212ENST00000545856 DNAH10Q8IVF4 4471 aa10.6□□□□□ -0.71
PRPF40A-212ENST00000545856 HYDINQ4G0P3 5121 aa10.6□□□□□ -0.71
PRPF40A-212ENST00000545856 DNAH17Q9UFH2 4485 aa10.6□□□□□ -0.71
PRPF40A-212ENST00000545856 C2orf48Q96LS8 159 aa10.6□□□□□ -0.71
PRPF40A-212ENST00000545856 RYR2Q92736 4967 aa10.6□□□□□ -0.71
PRPF40A-212ENST00000545856 LEPROTO15243 131 aa10.59□□□□□ -0.71
PRPF40A-212ENST00000545856 PRSS2P07478 247 aa10.59□□□□□ -0.71
PRPF40A-212ENST00000545856 NMUP48645 174 aa10.59□□□□□ -0.71
PRPF40A-212ENST00000545856 ORAOV1Q8WV07 137 aa10.59□□□□□ -0.71
PRPF40A-212ENST00000545856 ZNF561-AS1K7EIQ3 104 aa10.58□□□□□ -0.72
PRPF40A-212ENST00000545856 EREGO14944 169 aa10.58□□□□□ -0.72
PRPF40A-212ENST00000545856 SPINK8P0C7L1 97 aa10.58□□□□□ -0.72
PRPF40A-212ENST00000545856 LINC00336Q6ZUF6 198 aa10.58□□□□□ -0.72
PRPF40A-212ENST00000545856 C15orf56Q8N910 161 aa10.58□□□□□ -0.72
PRPF40A-212ENST00000545856 USP17L23D6RBM5 183 aa10.57□□□□□ -0.72
PRPF40A-212ENST00000545856 MAPKAPK5-AS1Q8N8E1 139 aa10.57□□□□□ -0.72
PRPF40A-212ENST00000545856 COX7B2Q8TF08 81 aa10.57□□□□□ -0.72
PRPF40A-212ENST00000545856 VAMP8Q9BV40 100 aa10.57□□□□□ -0.72
PRPF40A-212ENST00000545856 S100A12P80511 92 aa10.56□□□□□ -0.72
PRPF40A-212ENST00000545856 SPAG11BQ08648 103 aa10.56□□□□□ -0.72
PRPF40A-212ENST00000545856 FRAS1Q86XX4 4008 aa10.56□□□□□ -0.72
PRPF40A-212ENST00000545856 LRCOL1A6NCL2 159 aa10.55□□□□□ -0.72
PRPF40A-212ENST00000545856 ATOH7Q8N100 152 aa10.55□□□□□ -0.72
PRPF40A-212ENST00000545856 J3QQQ9 107 aa10.54□□□□□ -0.72
PRPF40A-212ENST00000545856 KIAA0087Q14695 138 aa10.54□□□□□ -0.72
PRPF40A-212ENST00000545856 C6orf226Q5I0X4 101 aa10.54□□□□□ -0.72
PRPF40A-212ENST00000545856 STPG4Q8N801 248 aa10.54□□□□□ -0.72
PRPF40A-212ENST00000545856 PKIGQ9Y2B9 76 aa10.54□□□□□ -0.72
PRPF40A-212ENST00000545856 A0A087WTM6 91 aa10.53□□□□□ -0.72
PRPF40A-212ENST00000545856 RTL8CO15255 209 aa10.53□□□□□ -0.72
PRPF40A-212ENST00000545856 LGALS3P17931 250 aaKnown RBP10.53□□□□□ -0.72
PRPF40A-212ENST00000545856 CNBPP62633 177 aaKnown RBP10.53□□□□□ -0.72
PRPF40A-212ENST00000545856 HERV-K104P63124 156 aa10.53□□□□□ -0.72
PRPF40A-212ENST00000545856 NTN5Q8WTR8 489 aaPredicted RBP10.53□□□□□ -0.72
PRPF40A-212ENST00000545856 hDV102S1A0JD36 115 aa10.52□□□□□ -0.72
PRPF40A-212ENST00000545856 LINC00587B1AMM8 73 aa10.52□□□□□ -0.72
PRPF40A-212ENST00000545856 NDUFA1O15239 70 aa10.52□□□□□ -0.72
PRPF40A-212ENST00000545856 CKS1BP61024 79 aa10.52□□□□□ -0.72
PRPF40A-212ENST00000545856 RNF151Q2KHN1 245 aa10.52□□□□□ -0.72
PRPF40A-212ENST00000545856 TOMM7Q9P0U1 55 aa10.52□□□□□ -0.72
PRPF40A-212ENST00000545856 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.52□□□□□ -0.73
PRPF40A-212ENST00000545856 TRBV30A0A0K0K1B3 111 aa10.52□□□□□ -0.73
PRPF40A-212ENST00000545856 MYMXA0A1B0GTQ4 84 aa10.52□□□□□ -0.73
PRPF40A-212ENST00000545856 ANKRD39Q53RE8 183 aa10.52□□□□□ -0.73
PRPF40A-212ENST00000545856 Q8N814 137 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms