RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 SPAG11BQ08648 103 aa8.18□□□□□ -1.1
RTN3-212ENST00000543123 C5orf38Q86SI9 138 aa8.18□□□□□ -1.1
RTN3-212ENST00000543123 C9JQL5 133 aa8.17□□□□□ -1.1
RTN3-212ENST00000543123 D6R8Y8 96 aa8.17□□□□□ -1.1
RTN3-212ENST00000543123 RPL18AQ02543 176 aaKnown RBP8.17□□□□□ -1.1
RTN3-212ENST00000543123 RNF151Q2KHN1 245 aa8.17□□□□□ -1.1
RTN3-212ENST00000543123 MRPL54Q6P161 138 aaKnown RBP8.17□□□□□ -1.1
RTN3-212ENST00000543123 IFITM10A6NMD0 228 aa8.16□□□□□ -1.1
RTN3-212ENST00000543123 RPL39P62891 51 aaKnown RBP8.16□□□□□ -1.1
RTN3-212ENST00000543123 MRPS36P82909 103 aaKnown RBP8.16□□□□□ -1.1
RTN3-212ENST00000543123 CLLU1Q5K131 121 aa8.16□□□□□ -1.1
RTN3-212ENST00000543123 ATP5L2Q7Z4Y8 100 aa8.16□□□□□ -1.1
RTN3-212ENST00000543123 A0A0J9YXV3 536 aa8.15□□□□□ -1.1
RTN3-212ENST00000543123 A0A1B0GXF2 115 aa8.15□□□□□ -1.1
RTN3-212ENST00000543123 RAB5AP20339 215 aa8.15□□□□□ -1.1
RTN3-212ENST00000543123 ORMDL3Q8N138 153 aa8.15□□□□□ -1.1
RTN3-212ENST00000543123 ORAOV1Q8WV07 137 aa8.15□□□□□ -1.1
RTN3-212ENST00000543123 IMMP2LQ96T52 175 aa8.15□□□□□ -1.1
RTN3-212ENST00000543123 TGIF2-C20orf24A0A0A6YYL0 155 aa8.14□□□□□ -1.11
RTN3-212ENST00000543123 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.14□□□□□ -1.11
RTN3-212ENST00000543123 NDUFA1O15239 70 aa8.14□□□□□ -1.11
RTN3-212ENST00000543123 IFI27P40305 119 aaPredicted RBP8.14□□□□□ -1.11
RTN3-212ENST00000543123 SRSF3P84103 164 aaKnown RBP8.14□□□□□ -1.11
RTN3-212ENST00000543123 IFITM2Q01629 132 aa8.14□□□□□ -1.11
RTN3-212ENST00000543123 MRPL35Q9NZE8 188 aaKnown RBP8.14□□□□□ -1.11
RTN3-212ENST00000543123 IGHV3OR16-9A0A0B4J2B5 98 aa8.13□□□□□ -1.11
RTN3-212ENST00000543123 NPYP01303 97 aa8.13□□□□□ -1.11
RTN3-212ENST00000543123 MT-ND6P03923 174 aa8.13□□□□□ -1.11
RTN3-212ENST00000543123 C9orf116Q5BN46 136 aaPredicted RBP8.13□□□□□ -1.11
RTN3-212ENST00000543123 A0A1W2PNN7 141 aa8.12□□□□□ -1.11
RTN3-212ENST00000543123 SRSF9Q13242 221 aaKnown RBP eCLIP8.12□□□□□ -1.11
RTN3-212ENST00000543123 TMEM136Q6ZRR5 245 aa8.12□□□□□ -1.11
RTN3-212ENST00000543123 PRELID3AQ96N28 172 aa8.12□□□□□ -1.11
RTN3-212ENST00000543123 LAMTOR2Q9Y2Q5 125 aa8.12□□□□□ -1.11
RTN3-212ENST00000543123 LCE2AQ5TA79 106 aaPredicted RBP8.11□□□□□ -1.11
RTN3-212ENST00000543123 OPRPNQ99935 248 aaPredicted RBP8.11□□□□□ -1.11
RTN3-212ENST00000543123 PYGO1Q9Y3Y4 419 aa8.11□□□□□ -1.11
RTN3-212ENST00000543123 PNRC1Q12796 327 aaPredicted RBP8.1□□□□□ -1.11
RTN3-212ENST00000543123 NDUFA5Q16718 116 aa8.1□□□□□ -1.11
RTN3-212ENST00000543123 MAP1LC3AQ9H492 121 aa8.1□□□□□ -1.11
RTN3-212ENST00000543123 PSORS1C2Q9UIG4 136 aa8.1□□□□□ -1.11
RTN3-212ENST00000543123 A0A087WZ39 114 aa8.09□□□□□ -1.11
RTN3-212ENST00000543123 TLX1NBP0CAT3 122 aa8.09□□□□□ -1.11
RTN3-212ENST00000543123 Q6ZN92 141 aa8.09□□□□□ -1.11
RTN3-212ENST00000543123 FAM104AQ969W3 186 aa8.09□□□□□ -1.11
RTN3-212ENST00000543123 TMEM141Q96I45 108 aa8.09□□□□□ -1.11
RTN3-212ENST00000543123 C2orf88Q9BSF0 95 aa8.09□□□□□ -1.11
RTN3-212ENST00000543123 LRP2P98164 4655 aa8.09□□□□□ -1.11
RTN3-212ENST00000543123 MT-ND4LP03901 98 aa8.08□□□□□ -1.12
RTN3-212ENST00000543123 KRTAP10-8P60410 259 aa8.08□□□□□ -1.12
RTN3-212ENST00000543123 C1orf137Q5JT78 98 aa8.08□□□□□ -1.12
RTN3-212ENST00000543123 UQCC3Q6UW78 93 aa8.08□□□□□ -1.12
RTN3-212ENST00000543123 TEX43Q6ZNM6 134 aa8.08□□□□□ -1.12
RTN3-212ENST00000543123 IGLV4-3A0A075B6K6 122 aa8.07□□□□□ -1.12
RTN3-212ENST00000543123 TRBV30A0A0K0K1B3 111 aa8.07□□□□□ -1.12
RTN3-212ENST00000543123 K7EMI3 77 aa8.07□□□□□ -1.12
RTN3-212ENST00000543123 PHF5AQ7RTV0 110 aaKnown RBP8.07□□□□□ -1.12
RTN3-212ENST00000543123 DIRC1Q969H9 104 aa8.07□□□□□ -1.12
RTN3-212ENST00000543123 ANAPC16Q96DE5 110 aa8.07□□□□□ -1.12
RTN3-212ENST00000543123 CYSLTR1Q9Y271 337 aa8.07□□□□□ -1.12
RTN3-212ENST00000543123 LOC389332A0A1B0GUA5 103 aa8.06□□□□□ -1.12
RTN3-212ENST00000543123 PRSS47A8MTI9 375 aa8.06□□□□□ -1.12
RTN3-212ENST00000543123 NPSP0C0P6 89 aa8.06□□□□□ -1.12
RTN3-212ENST00000543123 ORMDL2Q53FV1 153 aa8.06□□□□□ -1.12
RTN3-212ENST00000543123 LINC00242Q5T6M2 205 aa8.06□□□□□ -1.12
RTN3-212ENST00000543123 UNQ6190/PRO20217Q6UXQ8 127 aa8.06□□□□□ -1.12
RTN3-212ENST00000543123 LINC01561Q8N1V8 128 aa8.06□□□□□ -1.12
RTN3-212ENST00000543123 PACRGQ96M98 296 aaPredicted RBP8.06□□□□□ -1.12
RTN3-212ENST00000543123 C6orf48Q9UBA6 75 aa8.06□□□□□ -1.12
RTN3-212ENST00000543123 G0S2P27469 103 aa8.05□□□□□ -1.12
RTN3-212ENST00000543123 PAPPA-AS1Q5QFB9 102 aa8.05□□□□□ -1.12
RTN3-212ENST00000543123 C10orf25Q5T742 122 aa8.05□□□□□ -1.12
RTN3-212ENST00000543123 Q8N8P6 123 aa8.05□□□□□ -1.12
RTN3-212ENST00000543123 NDUFC2-KCTD14E9PQ53 114 aa8.04□□□□□ -1.12
RTN3-212ENST00000543123 PRSS2P07478 247 aa8.04□□□□□ -1.12
RTN3-212ENST00000543123 UBE2D1P51668 147 aa8.04□□□□□ -1.12
RTN3-212ENST00000543123 GAGE2EQ4V326 116 aa8.04□□□□□ -1.12
RTN3-212ENST00000543123 C2orf66Q6UXQ4 117 aa8.04□□□□□ -1.12
RTN3-212ENST00000543123 FAM19A5Q7Z5A7 132 aaPredicted RBP8.04□□□□□ -1.12
RTN3-212ENST00000543123 COMMD7Q86VX2 200 aa8.04□□□□□ -1.12
RTN3-212ENST00000543123 VCX2Q9H322 139 aa8.04□□□□□ -1.12
RTN3-212ENST00000543123 GAGE2DQ9UEU5 116 aa8.04□□□□□ -1.12
RTN3-212ENST00000543123 IGLV7-43P04211 117 aa8.03□□□□□ -1.12
RTN3-212ENST00000543123 KIAA0087Q14695 138 aa8.03□□□□□ -1.12
RTN3-212ENST00000543123 NXT2Q9NPJ8 142 aaKnown RBP8.03□□□□□ -1.12
RTN3-212ENST00000543123 RNF213Q63HN8 5207 aa8.02□□□□□ -1.13
RTN3-212ENST00000543123 FAM168BA1KXE4 195 aa8.02□□□□□ -1.13
RTN3-212ENST00000543123 M0QXV9 152 aa8.02□□□□□ -1.13
RTN3-212ENST00000543123 CKS1BP61024 79 aa8.02□□□□□ -1.13
RTN3-212ENST00000543123 UBE2BP63146 152 aa8.02□□□□□ -1.13
RTN3-212ENST00000543123 SEC11AP67812 179 aa8.02□□□□□ -1.13
RTN3-212ENST00000543123 CTDSP1Q9GZU7 261 aa8.02□□□□□ -1.13
RTN3-212ENST00000543123 AMELXQ99217 191 aa8.01□□□□□ -1.13
RTN3-212ENST00000543123 H0Y9J4 135 aa8□□□□□ -1.13
RTN3-212ENST00000543123 HERVK_113P63121 156 aa8□□□□□ -1.13
RTN3-212ENST00000543123 ODF1Q14990 250 aa8□□□□□ -1.13
RTN3-212ENST00000543123 C2orf82Q6UX34 121 aa8□□□□□ -1.13
RTN3-212ENST00000543123 C6orf226Q5I0X4 101 aa7.99□□□□□ -1.13
RTN3-212ENST00000543123 LINC00173Q6ZV60 143 aa7.99□□□□□ -1.13
RTN3-212ENST00000543123 Q8IZM0 81 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms