RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 PKIGQ9Y2B9 76 aa12.26□□□□□ -0.45
VPS33A-205ENST00000541169 A0A096LNJ9 63 aa12.25□□□□□ -0.45
VPS33A-205ENST00000541169 F8WDY8 70 aa12.25□□□□□ -0.45
VPS33A-205ENST00000541169 ZNF561-AS1K7EIQ3 104 aa12.25□□□□□ -0.45
VPS33A-205ENST00000541169 CDK2AP2O75956 126 aa12.25□□□□□ -0.45
VPS33A-205ENST00000541169 PDZD11Q5EBL8 140 aa12.25□□□□□ -0.45
VPS33A-205ENST00000541169 OR10D4PQ8NGN7 298 aa12.25□□□□□ -0.45
VPS33A-205ENST00000541169 HECTD4Q9Y4D8 3996 aa12.25□□□□□ -0.45
VPS33A-205ENST00000541169 A0A087WZ39 114 aa12.24□□□□□ -0.45
VPS33A-205ENST00000541169 CST9LQ9H4G1 147 aa12.24□□□□□ -0.45
VPS33A-205ENST00000541169 GEMIN7Q9H840 131 aaKnown RBP12.24□□□□□ -0.45
VPS33A-205ENST00000541169 C5orf38Q86SI9 138 aa12.23□□□□□ -0.45
VPS33A-205ENST00000541169 PKD1P98161 4303 aa12.23□□□□□ -0.45
VPS33A-205ENST00000541169 C9orf163Q8N9P6 203 aa12.22□□□□□ -0.45
VPS33A-205ENST00000541169 TINCRA0A1B0GVN0 87 aa12.21□□□□□ -0.45
VPS33A-205ENST00000541169 PMCHL1Q16048 86 aa12.21□□□□□ -0.45
VPS33A-205ENST00000541169 IGHV3-64A0A075B6Q5 118 aa12.2□□□□□ -0.46
VPS33A-205ENST00000541169 SERF1AO75920 110 aa12.2□□□□□ -0.46
VPS33A-205ENST00000541169 HIGD2BQ4VC39 106 aa12.2□□□□□ -0.46
VPS33A-205ENST00000541169 C2orf48Q96LS8 159 aa12.2□□□□□ -0.46
VPS33A-205ENST00000541169 HIST1H2BKO60814 126 aa12.19□□□□□ -0.46
VPS33A-205ENST00000541169 HIST1H2BJP06899 126 aa12.19□□□□□ -0.46
VPS33A-205ENST00000541169 HIST1H2BOP23527 126 aa12.19□□□□□ -0.46
VPS33A-205ENST00000541169 HIST1H2BBP33778 126 aa12.19□□□□□ -0.46
VPS33A-205ENST00000541169 HIST1H2BDP58876 126 aa12.19□□□□□ -0.46
VPS33A-205ENST00000541169 HIST1H2BCP62807 126 aa12.19□□□□□ -0.46
VPS33A-205ENST00000541169 HIST2H2BEQ16778 126 aa12.19□□□□□ -0.46
VPS33A-205ENST00000541169 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.19□□□□□ -0.46
VPS33A-205ENST00000541169 HIST1H2BHQ93079 126 aa12.19□□□□□ -0.46
VPS33A-205ENST00000541169 HIST1H2BNQ99877 126 aa12.19□□□□□ -0.46
VPS33A-205ENST00000541169 HIST1H2BMQ99879 126 aa12.19□□□□□ -0.46
VPS33A-205ENST00000541169 EPPK1P58107 5090 aaKnown RBP12.19□□□□□ -0.46
VPS33A-205ENST00000541169 FUSP35637 526 aaKnown RBP eCLIP12.18□□□□□ -0.46
VPS33A-205ENST00000541169 KRTAP10-1P60331 282 aa12.18□□□□□ -0.46
VPS33A-205ENST00000541169 ZC2HC1BQ5TFG8 222 aa12.18□□□□□ -0.46
VPS33A-205ENST00000541169 IFI27L1Q96BM0 104 aa12.18□□□□□ -0.46
VPS33A-205ENST00000541169 IGLV5-45A0A087WSX0 123 aa12.17□□□□□ -0.46
VPS33A-205ENST00000541169 NDUFA6P56556 154 aa12.17□□□□□ -0.46
VPS33A-205ENST00000541169 COX6A2Q02221 97 aa12.17□□□□□ -0.46
VPS33A-205ENST00000541169 ORAOV1Q8WV07 137 aa12.17□□□□□ -0.46
VPS33A-205ENST00000541169 PACRGQ96M98 296 aaPredicted RBP12.17□□□□□ -0.46
VPS33A-205ENST00000541169 HSPB8Q9UJY1 196 aa12.17□□□□□ -0.46
VPS33A-205ENST00000541169 TRAV12-1A0A0B4J245 112 aa12.16□□□□□ -0.46
VPS33A-205ENST00000541169 A0A0J9YXV3 536 aa12.16□□□□□ -0.46
VPS33A-205ENST00000541169 H3BRM9 83 aa12.16□□□□□ -0.46
VPS33A-205ENST00000541169 LEPROTL1O95214 131 aa12.16□□□□□ -0.46
VPS33A-205ENST00000541169 SPAG11BQ08648 103 aa12.16□□□□□ -0.46
VPS33A-205ENST00000541169 SYCNQ0VAF6 134 aa12.16□□□□□ -0.46
VPS33A-205ENST00000541169 IGLV4-69A0A075B6H9 119 aa12.15□□□□□ -0.46
VPS33A-205ENST00000541169 IGLC3P0DOY3 106 aa12.15□□□□□ -0.46
VPS33A-205ENST00000541169 Q6ZSA8 131 aa12.15□□□□□ -0.46
VPS33A-205ENST00000541169 FAM19A2Q8N3H0 131 aa12.15□□□□□ -0.46
VPS33A-205ENST00000541169 LINC00469Q8N7U9 141 aa12.15□□□□□ -0.46
VPS33A-205ENST00000541169 CARD19Q96LW7 228 aa12.15□□□□□ -0.46
VPS33A-205ENST00000541169 CAMK2N2Q96S95 79 aa12.15□□□□□ -0.46
VPS33A-205ENST00000541169 SLPIP03973 132 aa12.14□□□□□ -0.47
VPS33A-205ENST00000541169 RNF151Q2KHN1 245 aa12.14□□□□□ -0.47
VPS33A-205ENST00000541169 CDKN2A-AS1Q9UH64 79 aa12.14□□□□□ -0.47
VPS33A-205ENST00000541169 PRSS2P07478 247 aa12.13□□□□□ -0.47
VPS33A-205ENST00000541169 LINC00310P59036 64 aa12.13□□□□□ -0.47
VPS33A-205ENST00000541169 SDIM1Q6ZPB5 146 aa12.13□□□□□ -0.47
VPS33A-205ENST00000541169 PKHD1P08F94 4074 aa12.12□□□□□ -0.47
VPS33A-205ENST00000541169 NDUFA1O15239 70 aa12.12□□□□□ -0.47
VPS33A-205ENST00000541169 COA6Q5JTJ3 125 aaKnown RBP12.12□□□□□ -0.47
VPS33A-205ENST00000541169 LINC00474Q9P2X8 69 aa12.12□□□□□ -0.47
VPS33A-205ENST00000541169 Q8IZM0 81 aa12.11□□□□□ -0.47
VPS33A-205ENST00000541169 CHAC1Q9BUX1 264 aa12.11□□□□□ -0.47
VPS33A-205ENST00000541169 MRPL35Q9NZE8 188 aaKnown RBP12.11□□□□□ -0.47
VPS33A-205ENST00000541169 CHTOPQ9Y3Y2 248 aaKnown RBP12.11□□□□□ -0.47
VPS33A-205ENST00000541169 CXCL5P42830 114 aa12.1□□□□□ -0.47
VPS33A-205ENST00000541169 CKS1BP61024 79 aa12.09□□□□□ -0.47
VPS33A-205ENST00000541169 LINC01620Q4KN68 170 aa12.09□□□□□ -0.47
VPS33A-205ENST00000541169 C6orf226Q5I0X4 101 aa12.09□□□□□ -0.47
VPS33A-205ENST00000541169 F8VRH5 84 aa12.08□□□□□ -0.48
VPS33A-205ENST00000541169 NUPR1O60356 82 aa12.08□□□□□ -0.48
VPS33A-205ENST00000541169 KIAA0087Q14695 138 aa12.08□□□□□ -0.48
VPS33A-205ENST00000541169 LINC00526Q96FQ7 95 aa12.08□□□□□ -0.48
VPS33A-205ENST00000541169 TRBV30A0A0K0K1B3 111 aa12.07□□□□□ -0.48
VPS33A-205ENST00000541169 SMIM1B2RUZ4 78 aa12.07□□□□□ -0.48
VPS33A-205ENST00000541169 Q6ZRU5 148 aa12.07□□□□□ -0.48
VPS33A-205ENST00000541169 MAP1LC3CQ9BXW4 147 aa12.07□□□□□ -0.48
VPS33A-205ENST00000541169 LOC107984640A0A0U1RRK4 108 aa12.06□□□□□ -0.48
VPS33A-205ENST00000541169 FABP4P15090 132 aa12.06□□□□□ -0.48
VPS33A-205ENST00000541169 XGP55808 180 aa12.06□□□□□ -0.48
VPS33A-205ENST00000541169 CIRBPQ14011 172 aaKnown RBP12.06□□□□□ -0.48
VPS33A-205ENST00000541169 DNAH11Q96DT5 4516 aa12.05□□□□□ -0.48
VPS33A-205ENST00000541169 PLNP26678 52 aa12.05□□□□□ -0.48
VPS33A-205ENST00000541169 SFTA2Q6UW10 78 aa12.05□□□□□ -0.48
VPS33A-205ENST00000541169 FAM30AQ9NZY2 134 aa12.05□□□□□ -0.48
VPS33A-205ENST00000541169 TOMM7Q9P0U1 55 aa12.05□□□□□ -0.48
VPS33A-205ENST00000541169 ZNF22P17026 224 aaPredicted RBP12.04□□□□□ -0.48
VPS33A-205ENST00000541169 TMEM170BQ5T4T1 132 aa12.04□□□□□ -0.48
VPS33A-205ENST00000541169 COX7B2Q8TF08 81 aa12.04□□□□□ -0.48
VPS33A-205ENST00000541169 BIRC6Q9NR09 4857 aa12.04□□□□□ -0.48
VPS33A-205ENST00000541169 C11orf86A6NJI1 115 aa12.03□□□□□ -0.48
VPS33A-205ENST00000541169 IGLV5-39A0A0G2JS06 123 aa12.02□□□□□ -0.49
VPS33A-205ENST00000541169 TLX1NBP0CAT3 122 aa12.02□□□□□ -0.49
VPS33A-205ENST00000541169 ODF1Q14990 250 aa12.02□□□□□ -0.49
VPS33A-205ENST00000541169 DPH3Q96FX2 82 aa12.02□□□□□ -0.49
VPS33A-205ENST00000541169 SPINK8P0C7L1 97 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms