RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 DLEU1O43261 78 aa12.01□□□□□ -0.49
CLIP1-215ENST00000541108 SLC25A34Q6PIV7 304 aa12.01□□□□□ -0.49
CLIP1-215ENST00000541108 CLPSL2Q6UWE3 100 aa12.01□□□□□ -0.49
CLIP1-215ENST00000541108 ENHOQ6UWT2 76 aa12.01□□□□□ -0.49
CLIP1-215ENST00000541108 IGHV1-58A0A0C4DH39 117 aa12□□□□□ -0.49
CLIP1-215ENST00000541108 CRPP02741 224 aa12□□□□□ -0.49
CLIP1-215ENST00000541108 BOD1L2Q8IYS8 172 aa12□□□□□ -0.49
CLIP1-215ENST00000541108 K7EP13 123 aa12□□□□□ -0.49
CLIP1-215ENST00000541108 MIAQ16674 131 aa12□□□□□ -0.49
CLIP1-215ENST00000541108 CD164L2Q6UWJ8 174 aa12□□□□□ -0.49
CLIP1-215ENST00000541108 DYNC2H1Q8NCM8 4307 aaKnown RBP11.99□□□□□ -0.49
CLIP1-215ENST00000541108 LEPROTO15243 131 aa11.99□□□□□ -0.49
CLIP1-215ENST00000541108 PCP2Q8IVA1 136 aa11.99□□□□□ -0.49
CLIP1-215ENST00000541108 CHCHD10Q8WYQ3 142 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-215ENST00000541108 Q9H8V8 135 aa11.99□□□□□ -0.49
CLIP1-215ENST00000541108 A0A087WZ39 114 aa11.98□□□□□ -0.49
CLIP1-215ENST00000541108 PCP4L1A6NKN8 68 aa11.98□□□□□ -0.49
CLIP1-215ENST00000541108 MUC7Q8TAX7 377 aa11.98□□□□□ -0.49
CLIP1-215ENST00000541108 UBE2WQ96B02 151 aa11.98□□□□□ -0.49
CLIP1-215ENST00000541108 PLEKHB2Q96CS7 222 aa11.98□□□□□ -0.49
CLIP1-215ENST00000541108 DDTP30046 118 aa11.97□□□□□ -0.49
CLIP1-215ENST00000541108 XCL1P47992 114 aa11.97□□□□□ -0.49
CLIP1-215ENST00000541108 LINC01561Q8N1V8 128 aa11.97□□□□□ -0.49
CLIP1-215ENST00000541108 C10orf126Q8N4M7 172 aa11.97□□□□□ -0.49
CLIP1-215ENST00000541108 WWC2-AS2Q96NR7 200 aa11.97□□□□□ -0.49
CLIP1-215ENST00000541108 TRAV8-3A0A0A6YYJ7 113 aa11.97□□□□□ -0.49
CLIP1-215ENST00000541108 IGLV5-39A0A0G2JS06 123 aa11.97□□□□□ -0.49
CLIP1-215ENST00000541108 SMIM1B2RUZ4 78 aa11.97□□□□□ -0.49
CLIP1-215ENST00000541108 J3QQQ9 107 aa11.97□□□□□ -0.49
CLIP1-215ENST00000541108 SPINK8P0C7L1 97 aa11.97□□□□□ -0.49
CLIP1-215ENST00000541108 DNAH7Q8WXX0 4024 aa11.96□□□□□ -0.49
CLIP1-215ENST00000541108 CSMD3Q7Z407 3707 aa11.96□□□□□ -0.49
CLIP1-215ENST00000541108 UBE2DNLQ8IWF7 75 aa11.96□□□□□ -0.5
CLIP1-215ENST00000541108 IGLV10-54A0A075B6I4 117 aa11.95□□□□□ -0.5
CLIP1-215ENST00000541108 LGALS3P17931 250 aaKnown RBP11.95□□□□□ -0.5
CLIP1-215ENST00000541108 IGHV3-64A0A075B6Q5 118 aa11.94□□□□□ -0.5
CLIP1-215ENST00000541108 IBA57-AS1B1ANH7 110 aa11.94□□□□□ -0.5
CLIP1-215ENST00000541108 MYMXA0A1B0GTQ4 84 aa11.94□□□□□ -0.5
CLIP1-215ENST00000541108 C5orf38Q86SI9 138 aa11.94□□□□□ -0.5
CLIP1-215ENST00000541108 MAPKAPK5-AS1Q8N8E1 139 aa11.94□□□□□ -0.5
CLIP1-215ENST00000541108 TTTY13Q9BZ97 58 aa11.94□□□□□ -0.5
CLIP1-215ENST00000541108 COX7A2LO14548 114 aa11.93□□□□□ -0.5
CLIP1-215ENST00000541108 TSPEAR-AS2P59090 65 aa11.93□□□□□ -0.5
CLIP1-215ENST00000541108 ZFAND6Q6FIF0 208 aa11.93□□□□□ -0.5
CLIP1-215ENST00000541108 ZNF815PA8K554 130 aa11.92□□□□□ -0.5
CLIP1-215ENST00000541108 HNRNPA3P51991 378 aaKnown RBP11.92□□□□□ -0.5
CLIP1-215ENST00000541108 FOXI1Q12951 378 aa11.92□□□□□ -0.5
CLIP1-215ENST00000541108 GAGE12HA6NDE8 117 aa11.91□□□□□ -0.5
CLIP1-215ENST00000541108 C1orf43Q9BWL3 253 aa11.91□□□□□ -0.5
CLIP1-215ENST00000541108 TP73-AS1Q9UF72 201 aa11.91□□□□□ -0.5
CLIP1-215ENST00000541108 HIGD1BQ9P298 99 aa11.9□□□□□ -0.5
CLIP1-215ENST00000541108 TGP01266 2768 aa11.89□□□□□ -0.51
CLIP1-215ENST00000541108 MALP21145 153 aa11.89□□□□□ -0.51
CLIP1-215ENST00000541108 KRTAP26-1Q6PEX3 210 aa11.89□□□□□ -0.51
CLIP1-215ENST00000541108 C2orf91Q6ZV80 131 aa11.89□□□□□ -0.51
CLIP1-215ENST00000541108 NDUFA12Q9UI09 145 aa11.88□□□□□ -0.51
CLIP1-215ENST00000541108 APOMO95445 188 aa11.87□□□□□ -0.51
CLIP1-215ENST00000541108 COX7B2Q8TF08 81 aa11.87□□□□□ -0.51
CLIP1-215ENST00000541108 RMI2Q96E14 147 aa11.87□□□□□ -0.51
CLIP1-215ENST00000541108 STARD9Q9P2P6 4700 aa11.86□□□□□ -0.51
CLIP1-215ENST00000541108 NDUFA1O15239 70 aa11.86□□□□□ -0.51
CLIP1-215ENST00000541108 SFTA2Q6UW10 78 aa11.86□□□□□ -0.51
CLIP1-215ENST00000541108 SCGB1D4Q6XE38 83 aa11.86□□□□□ -0.51
CLIP1-215ENST00000541108 Q8IZM0 81 aa11.86□□□□□ -0.51
CLIP1-215ENST00000541108 PLECQ15149 4684 aaKnown RBP11.86□□□□□ -0.51
CLIP1-215ENST00000541108 IGKV2D-24A0A075B6R9 120 aa11.85□□□□□ -0.51
CLIP1-215ENST00000541108 C3orf84H3BNL1 204 aa11.85□□□□□ -0.51
CLIP1-215ENST00000541108 CTAG1AP78358 180 aa11.85□□□□□ -0.51
CLIP1-215ENST00000541108 TENM2Q9NT68 2774 aa11.85□□□□□ -0.51
CLIP1-215ENST00000541108 LINC00587B1AMM8 73 aa11.84□□□□□ -0.51
CLIP1-215ENST00000541108 TOMM7Q9P0U1 55 aa11.84□□□□□ -0.51
CLIP1-215ENST00000541108 COX11Q9Y6N1 276 aa11.84□□□□□ -0.51
CLIP1-215ENST00000541108 C6orf226Q5I0X4 101 aa11.84□□□□□ -0.51
CLIP1-215ENST00000541108 TTC32Q5I0X7 151 aa11.84□□□□□ -0.51
CLIP1-215ENST00000541108 CASC10Q5T4H9 136 aa11.84□□□□□ -0.51
CLIP1-215ENST00000541108 ZNF625Q96I27 306 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-215ENST00000541108 Q9HAA7 133 aa11.84□□□□□ -0.51
CLIP1-215ENST00000541108 PRSS2P07478 247 aa11.83□□□□□ -0.52
CLIP1-215ENST00000541108 HERV-K104P63124 156 aa11.83□□□□□ -0.52
CLIP1-215ENST00000541108 ORAOV1Q8WV07 137 aa11.83□□□□□ -0.52
CLIP1-215ENST00000541108 A0A0J9YXY3 114 aa11.82□□□□□ -0.52
CLIP1-215ENST00000541108 CXCL5P42830 114 aa11.81□□□□□ -0.52
CLIP1-215ENST00000541108 KIAA0087Q14695 138 aa11.81□□□□□ -0.52
CLIP1-215ENST00000541108 KRTAP1-5Q9BYS1 174 aa11.81□□□□□ -0.52
CLIP1-215ENST00000541108 NBDYA0A0U1RRE5 68 aa11.81□□□□□ -0.52
CLIP1-215ENST00000541108 LYSTQ99698 3801 aa11.81□□□□□ -0.52
CLIP1-215ENST00000541108 TAL2Q16559 108 aa11.8□□□□□ -0.52
CLIP1-215ENST00000541108 TM2D2Q9BX73 214 aa11.8□□□□□ -0.52
CLIP1-215ENST00000541108 SPANXB1Q9NS25 103 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-215ENST00000541108 HSD52Q0P140 79 aa11.79□□□□□ -0.52
CLIP1-215ENST00000541108 CFAP161Q6P656 301 aa11.79□□□□□ -0.52
CLIP1-215ENST00000541108 TMEM238C9JI98 176 aa11.78□□□□□ -0.52
CLIP1-215ENST00000541108 TIMM17BO60830 172 aa11.78□□□□□ -0.52
CLIP1-215ENST00000541108 CIRBPQ14011 172 aaKnown RBP11.78□□□□□ -0.52
CLIP1-215ENST00000541108 CKS1BP61024 79 aa11.78□□□□□ -0.52
CLIP1-215ENST00000541108 SPAG11BQ08648 103 aa11.77□□□□□ -0.53
CLIP1-215ENST00000541108 HIST1H4GQ99525 98 aa11.77□□□□□ -0.53
CLIP1-215ENST00000541108 M0R143 59 aa11.76□□□□□ -0.53
CLIP1-215ENST00000541108 SRSF9Q13242 221 aaKnown RBP eCLIP11.76□□□□□ -0.53
CLIP1-215ENST00000541108 Q6ZVH6 145 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms