RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 SMAGPQ0VAQ4 97 aa8.4□□□□□ -1.06
AP003559.1-201ENST00000540906 C10orf126Q8N4M7 172 aa8.4□□□□□ -1.06
AP003559.1-201ENST00000540906 DEFB131BA0A096LNP1 70 aa8.4□□□□□ -1.07
AP003559.1-201ENST00000540906 A0A1B0GUV1 79 aa8.4□□□□□ -1.07
AP003559.1-201ENST00000540906 SMIM1B2RUZ4 78 aa8.4□□□□□ -1.07
AP003559.1-201ENST00000540906 COL5A1-AS1Q5SY13 56 aa8.4□□□□□ -1.07
AP003559.1-201ENST00000540906 IGLV5-39A0A0G2JS06 123 aa8.39□□□□□ -1.07
AP003559.1-201ENST00000540906 GCSHP23434 173 aa8.39□□□□□ -1.07
AP003559.1-201ENST00000540906 LELP1Q5T871 98 aa8.39□□□□□ -1.07
AP003559.1-201ENST00000540906 ORAOV1Q8WV07 137 aa8.39□□□□□ -1.07
AP003559.1-201ENST00000540906 LINC00959A0A1B0GUT2 108 aa8.38□□□□□ -1.07
AP003559.1-201ENST00000540906 PRKDCP78527 4128 aaKnown RBP8.38□□□□□ -1.07
AP003559.1-201ENST00000540906 TAX1BP3O14907 124 aa8.38□□□□□ -1.07
AP003559.1-201ENST00000540906 SCGB1D4Q6XE38 83 aa8.38□□□□□ -1.07
AP003559.1-201ENST00000540906 LINC00269Q8N2A0 174 aa8.38□□□□□ -1.07
AP003559.1-201ENST00000540906 COL7A1Q02388 2944 aa8.37□□□□□ -1.07
AP003559.1-201ENST00000540906 H3BNG1 76 aa8.37□□□□□ -1.07
AP003559.1-201ENST00000540906 ESRGQ1W209 222 aa8.37□□□□□ -1.07
AP003559.1-201ENST00000540906 CEND1Q8N111 149 aa8.37□□□□□ -1.07
AP003559.1-201ENST00000540906 IGHV3OR16-9A0A0B4J2B5 98 aa8.36□□□□□ -1.07
AP003559.1-201ENST00000540906 A0A0J9YXY3 114 aa8.36□□□□□ -1.07
AP003559.1-201ENST00000540906 H3BRM9 83 aa8.36□□□□□ -1.07
AP003559.1-201ENST00000540906 WFDC10BQ8IUB3 73 aa8.36□□□□□ -1.07
AP003559.1-201ENST00000540906 HIST1H4GQ99525 98 aa8.36□□□□□ -1.07
AP003559.1-201ENST00000540906 NDUFA12Q9UI09 145 aa8.36□□□□□ -1.07
AP003559.1-201ENST00000540906 K7ERJ3 54 aa8.36□□□□□ -1.07
AP003559.1-201ENST00000540906 CCL25O15444 150 aa8.36□□□□□ -1.07
AP003559.1-201ENST00000540906 SEC11AP67812 179 aa8.36□□□□□ -1.07
AP003559.1-201ENST00000540906 ZFAND6Q6FIF0 208 aa8.36□□□□□ -1.07
AP003559.1-201ENST00000540906 SH2D6Q7Z4S9 175 aa8.36□□□□□ -1.07
AP003559.1-201ENST00000540906 C5orf38Q86SI9 138 aa8.36□□□□□ -1.07
AP003559.1-201ENST00000540906 LITAFQ99732 161 aa8.36□□□□□ -1.07
AP003559.1-201ENST00000540906 TM2D2Q9BX73 214 aa8.36□□□□□ -1.07
AP003559.1-201ENST00000540906 ANGP03950 147 aaKnown RBP8.35□□□□□ -1.07
AP003559.1-201ENST00000540906 XCL1P47992 114 aa8.35□□□□□ -1.07
AP003559.1-201ENST00000540906 FBN3Q75N90 2809 aa8.34□□□□□ -1.07
AP003559.1-201ENST00000540906 IGLV10-54A0A075B6I4 117 aa8.34□□□□□ -1.07
AP003559.1-201ENST00000540906 IGHV3-30P01768 117 aa8.34□□□□□ -1.07
AP003559.1-201ENST00000540906 IGHV3-33P01772 117 aa8.34□□□□□ -1.07
AP003559.1-201ENST00000540906 IGHV3-30-5P0DP03 117 aa8.34□□□□□ -1.07
AP003559.1-201ENST00000540906 ADAMTSL4-AS1Q5T5F5 129 aa8.34□□□□□ -1.07
AP003559.1-201ENST00000540906 DYNC2H1Q8NCM8 4307 aaKnown RBP8.34□□□□□ -1.07
AP003559.1-201ENST00000540906 TAL2Q16559 108 aa8.33□□□□□ -1.08
AP003559.1-201ENST00000540906 NAA38Q9BRA0 125 aaKnown RBP8.33□□□□□ -1.08
AP003559.1-201ENST00000540906 TRAV10A0A0B4J240 114 aa8.33□□□□□ -1.08
AP003559.1-201ENST00000540906 REG3AQ06141 175 aa8.33□□□□□ -1.08
AP003559.1-201ENST00000540906 B9D2Q9BPU9 175 aa8.33□□□□□ -1.08
AP003559.1-201ENST00000540906 SPANXB1Q9NS25 103 aaPredicted RBP8.33□□□□□ -1.08
AP003559.1-201ENST00000540906 KLK12Q9UKR0 248 aa8.33□□□□□ -1.08
AP003559.1-201ENST00000540906 ENHOQ6UWT2 76 aa8.32□□□□□ -1.08
AP003559.1-201ENST00000540906 RAB37Q96AX2 223 aa8.32□□□□□ -1.08
AP003559.1-201ENST00000540906 ZNF625Q96I27 306 aaPredicted RBP8.32□□□□□ -1.08
AP003559.1-201ENST00000540906 Q9H8V8 135 aa8.32□□□□□ -1.08
AP003559.1-201ENST00000540906 NHP2Q9NX24 153 aaKnown RBP8.32□□□□□ -1.08
AP003559.1-201ENST00000540906 COX11Q9Y6N1 276 aa8.32□□□□□ -1.08
AP003559.1-201ENST00000540906 STAB2Q8WWQ8 2551 aa8.32□□□□□ -1.08
AP003559.1-201ENST00000540906 A0A087WZ39 114 aa8.31□□□□□ -1.08
AP003559.1-201ENST00000540906 NDUFA1O15239 70 aa8.31□□□□□ -1.08
AP003559.1-201ENST00000540906 SRSF9Q13242 221 aaKnown RBP eCLIP8.31□□□□□ -1.08
AP003559.1-201ENST00000540906 SS18Q15532 418 aa8.31□□□□□ -1.08
AP003559.1-201ENST00000540906 EIF4EBP3O60516 100 aaPredicted RBP8.31□□□□□ -1.08
AP003559.1-201ENST00000540906 PTTG1IPP53801 180 aa8.31□□□□□ -1.08
AP003559.1-201ENST00000540906 CHCHD10Q8WYQ3 142 aaPredicted RBP8.31□□□□□ -1.08
AP003559.1-201ENST00000540906 A6NDN8 102 aa8.3□□□□□ -1.08
AP003559.1-201ENST00000540906 DAND5Q8N907 189 aa8.3□□□□□ -1.08
AP003559.1-201ENST00000540906 PRR34Q9NV39 138 aa8.3□□□□□ -1.08
AP003559.1-201ENST00000540906 TOMM7Q9P0U1 55 aa8.3□□□□□ -1.08
AP003559.1-201ENST00000540906 DNAH1Q9P2D7 4330 aa8.29□□□□□ -1.08
AP003559.1-201ENST00000540906 FOXI1Q12951 378 aa8.29□□□□□ -1.08
AP003559.1-201ENST00000540906 MUSTN1Q8IVN3 82 aa8.29□□□□□ -1.08
AP003559.1-201ENST00000540906 COX7B2Q8TF08 81 aa8.29□□□□□ -1.08
AP003559.1-201ENST00000540906 A0A0U1RRA0 63 aa8.29□□□□□ -1.08
AP003559.1-201ENST00000540906 NPC2P61916 151 aa8.29□□□□□ -1.08
AP003559.1-201ENST00000540906 A0A1B0GWB2 263 aa8.27□□□□□ -1.09
AP003559.1-201ENST00000540906 GAGE12HA6NDE8 117 aa8.27□□□□□ -1.09
AP003559.1-201ENST00000540906 IGLL5B9A064 214 aa8.27□□□□□ -1.09
AP003559.1-201ENST00000540906 SMIM13P0DJ93 91 aa8.27□□□□□ -1.09
AP003559.1-201ENST00000540906 CD164L2Q6UWJ8 174 aa8.27□□□□□ -1.09
AP003559.1-201ENST00000540906 LINC00588Q9Y4M8 146 aa8.27□□□□□ -1.09
AP003559.1-201ENST00000540906 TMEM238C9JI98 176 aa8.26□□□□□ -1.09
AP003559.1-201ENST00000540906 UBE2WQ96B02 151 aa8.26□□□□□ -1.09
AP003559.1-201ENST00000540906 DNAH7Q8WXX0 4024 aa8.26□□□□□ -1.09
AP003559.1-201ENST00000540906 CSMD3Q7Z407 3707 aa8.26□□□□□ -1.09
AP003559.1-201ENST00000540906 A4D1N5 150 aa8.26□□□□□ -1.09
AP003559.1-201ENST00000540906 C9orf118A6NHY6 69 aa8.26□□□□□ -1.09
AP003559.1-201ENST00000540906 H3BUT2 72 aa8.26□□□□□ -1.09
AP003559.1-201ENST00000540906 SPANXDQ9BXN6 97 aa8.26□□□□□ -1.09
AP003559.1-201ENST00000540906 SPANXCQ9NY87 97 aa8.26□□□□□ -1.09
AP003559.1-201ENST00000540906 PLECQ15149 4684 aaKnown RBP8.26□□□□□ -1.09
AP003559.1-201ENST00000540906 LYSTQ99698 3801 aa8.26□□□□□ -1.09
AP003559.1-201ENST00000540906 APOMO95445 188 aa8.25□□□□□ -1.09
AP003559.1-201ENST00000540906 CFC1BP0CG36 223 aa8.25□□□□□ -1.09
AP003559.1-201ENST00000540906 CFC1P0CG37 223 aa8.25□□□□□ -1.09
AP003559.1-201ENST00000540906 MIAQ16674 131 aa8.25□□□□□ -1.09
AP003559.1-201ENST00000540906 KRTAP26-1Q6PEX3 210 aa8.25□□□□□ -1.09
AP003559.1-201ENST00000540906 C2orf82Q6UX34 121 aa8.25□□□□□ -1.09
AP003559.1-201ENST00000540906 SOSTDC1Q6X4U4 206 aa8.25□□□□□ -1.09
AP003559.1-201ENST00000540906 COX7A2LO14548 114 aa8.24□□□□□ -1.09
AP003559.1-201ENST00000540906 TIMM17BO60830 172 aa8.24□□□□□ -1.09
AP003559.1-201ENST00000540906 KIAA0087Q14695 138 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms