RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 LOC107984640A0A0U1RRK4 108 aa10.2□□□□□ -0.78
USP3-204ENST00000540797 A0A1B0GX51 115 aa10.2□□□□□ -0.78
USP3-204ENST00000540797 IGKV2-28A0A075B6P5 120 aa10.19□□□□□ -0.78
USP3-204ENST00000540797 IGKV2D-28P01615 120 aa10.19□□□□□ -0.78
USP3-204ENST00000540797 MAPKAPK5-AS1Q8N8E1 139 aa10.19□□□□□ -0.78
USP3-204ENST00000540797 CDC42SE2Q9NRR3 84 aa10.19□□□□□ -0.78
USP3-204ENST00000540797 UBE2D1P51668 147 aa10.19□□□□□ -0.78
USP3-204ENST00000540797 MP68P56378 58 aa10.18□□□□□ -0.78
USP3-204ENST00000540797 C14orf132Q9NPU4 83 aa10.18□□□□□ -0.78
USP3-204ENST00000540797 EXPH5Q8NEV8 1989 aa10.18□□□□□ -0.78
USP3-204ENST00000540797 TCL1BO95988 128 aa10.17□□□□□ -0.78
USP3-204ENST00000540797 Q8N2B8 174 aa10.17□□□□□ -0.78
USP3-204ENST00000540797 C6orf99Q4VX62 202 aa10.17□□□□□ -0.78
USP3-204ENST00000540797 RNASE8Q8TDE3 154 aaKnown RBP10.17□□□□□ -0.78
USP3-204ENST00000540797 TRAV23DV6A0A075B6W5 121 aa10.17□□□□□ -0.78
USP3-204ENST00000540797 SETD2Q9BYW2 2564 aaPredicted RBP10.16□□□□□ -0.78
USP3-204ENST00000540797 YPEL4Q96NS1 127 aa10.16□□□□□ -0.78
USP3-204ENST00000540797 FHL2Q14192 279 aa10.16□□□□□ -0.78
USP3-204ENST00000540797 CHCHD7Q9BUK0 85 aa10.16□□□□□ -0.78
USP3-204ENST00000540797 M0R378 163 aa10.16□□□□□ -0.78
USP3-204ENST00000540797 SLPIP03973 132 aa10.15□□□□□ -0.79
USP3-204ENST00000540797 LINC00474Q9P2X8 69 aa10.14□□□□□ -0.79
USP3-204ENST00000540797 G3V4G9 280 aa10.14□□□□□ -0.79
USP3-204ENST00000540797 TIMM17BO60830 172 aa10.14□□□□□ -0.79
USP3-204ENST00000540797 PTH2Q96A98 100 aa10.14□□□□□ -0.79
USP3-204ENST00000540797 FOXI1Q12951 378 aa10.14□□□□□ -0.79
USP3-204ENST00000540797 Q8IZM0 81 aa10.13□□□□□ -0.79
USP3-204ENST00000540797 CYSRT1A8MQ03 144 aa10.13□□□□□ -0.79
USP3-204ENST00000540797 TP73-AS1Q9UF72 201 aa10.13□□□□□ -0.79
USP3-204ENST00000540797 PPDPFQ9H3Y8 114 aa10.12□□□□□ -0.79
USP3-204ENST00000540797 RPL37AP8A6NKH3 93 aa10.12□□□□□ -0.79
USP3-204ENST00000540797 BPY2O14599 106 aa10.12□□□□□ -0.79
USP3-204ENST00000540797 COX17Q14061 63 aa10.12□□□□□ -0.79
USP3-204ENST00000540797 CHKB-CPT1BH3BT56 60 aa10.11□□□□□ -0.79
USP3-204ENST00000540797 ZNF706Q9Y5V0 76 aaPredicted RBP10.11□□□□□ -0.79
USP3-204ENST00000540797 NHLRC4P0CG21 123 aaPredicted RBP10.11□□□□□ -0.79
USP3-204ENST00000540797 IGIPA6NJ69 53 aa10.1□□□□□ -0.79
USP3-204ENST00000540797 LINC00242Q5T6M2 205 aa10.1□□□□□ -0.79
USP3-204ENST00000540797 TRIAP1O43715 76 aa10.1□□□□□ -0.79
USP3-204ENST00000540797 BEAN1Q3B7T3 259 aa10.1□□□□□ -0.79
USP3-204ENST00000540797 DHRS4-AS1Q9P1J3 65 aa10.1□□□□□ -0.79
USP3-204ENST00000540797 PKD1L2Q7Z442 2459 aa10.09□□□□□ -0.79
USP3-204ENST00000540797 COX8CQ7Z4L0 72 aa10.09□□□□□ -0.79
USP3-204ENST00000540797 IGLV4-60A0A075B6I1 120 aa10.09□□□□□ -0.79
USP3-204ENST00000540797 PLAC8L1A1L4L8 177 aa10.09□□□□□ -0.79
USP3-204ENST00000540797 UNQ6190/PRO20217Q6UXQ8 127 aa10.09□□□□□ -0.79
USP3-204ENST00000540797 ATOX1O00244 68 aa10.08□□□□□ -0.8
USP3-204ENST00000540797 MUC7Q8TAX7 377 aa10.08□□□□□ -0.8
USP3-204ENST00000540797 TRBV30A0A0K0K1B3 111 aa10.07□□□□□ -0.8
USP3-204ENST00000540797 FHL3Q13643 280 aa10.07□□□□□ -0.8
USP3-204ENST00000540797 LINC00694P0DN24 101 aa10.07□□□□□ -0.8
USP3-204ENST00000540797 MTORP42345 2549 aa10.07□□□□□ -0.8
USP3-204ENST00000540797 FAM236AA0A1B0GUQ0 79 aa10.07□□□□□ -0.8
USP3-204ENST00000540797 FAM236BA0A1B0GV22 79 aa10.07□□□□□ -0.8
USP3-204ENST00000540797 EGFEM1PQ0D2K5 195 aa10.07□□□□□ -0.8
USP3-204ENST00000540797 EPG5Q9HCE0 2579 aa10.07□□□□□ -0.8
USP3-204ENST00000540797 KRTAP24-1Q3LI83 254 aa10.06□□□□□ -0.8
USP3-204ENST00000540797 Q6ZQY7 126 aa10.06□□□□□ -0.8
USP3-204ENST00000540797 POM121L12Q8N7R1 296 aa10.06□□□□□ -0.8
USP3-204ENST00000540797 IGLV5-52A0A0A0MRZ9 124 aa10.06□□□□□ -0.8
USP3-204ENST00000540797 USP17L23D6RBM5 183 aa10.06□□□□□ -0.8
USP3-204ENST00000540797 LYPD5Q6UWN5 251 aa10.06□□□□□ -0.8
USP3-204ENST00000540797 Q6ZSN1 163 aa10.06□□□□□ -0.8
USP3-204ENST00000540797 ZNF73O43830 326 aaPredicted RBP10.05□□□□□ -0.8
USP3-204ENST00000540797 WFDC9Q8NEX5 89 aa10.05□□□□□ -0.8
USP3-204ENST00000540797 POLQO75417 2590 aa10.05□□□□□ -0.8
USP3-204ENST00000540797 IGKV4-1P06312 121 aa10.04□□□□□ -0.8
USP3-204ENST00000540797 C1orf134Q5TEV5 83 aa10.04□□□□□ -0.8
USP3-204ENST00000540797 CCKP06307 115 aa10.04□□□□□ -0.8
USP3-204ENST00000540797 WFDC10BQ8IUB3 73 aa10.04□□□□□ -0.8
USP3-204ENST00000540797 M0QXV9 152 aa10.04□□□□□ -0.8
USP3-204ENST00000540797 UPK3BQ9BT76 320 aa10.04□□□□□ -0.8
USP3-204ENST00000540797 C6orf223Q8N319 242 aa10.03□□□□□ -0.8
USP3-204ENST00000540797 TEX49A0A1B0GTD5 131 aa10.03□□□□□ -0.8
USP3-204ENST00000540797 SMIM1B2RUZ4 78 aa10.03□□□□□ -0.8
USP3-204ENST00000540797 LINC00643Q86TS7 51 aa10.03□□□□□ -0.8
USP3-204ENST00000540797 SMIM11BQ8TCY0 68 aa10.03□□□□□ -0.8
USP3-204ENST00000540797 C9orf116Q5BN46 136 aaPredicted RBP10.03□□□□□ -0.8
USP3-204ENST00000540797 SMIM20Q8N5G0 67 aa10.03□□□□□ -0.8
USP3-204ENST00000540797 COX6A2Q02221 97 aa10.02□□□□□ -0.8
USP3-204ENST00000540797 CSDC2Q9Y534 153 aaKnown RBP10.02□□□□□ -0.81
USP3-204ENST00000540797 PTPRBP23467 1997 aa10.02□□□□□ -0.81
USP3-204ENST00000540797 SPINK6Q6UWN8 80 aa10.02□□□□□ -0.81
USP3-204ENST00000540797 HRCT1Q6UXD1 115 aa10.02□□□□□ -0.81
USP3-204ENST00000540797 IGLV9-49A0A0B4J1Y8 123 aa10.01□□□□□ -0.81
USP3-204ENST00000540797 SCXQ7RTU7 201 aa10.01□□□□□ -0.81
USP3-204ENST00000540797 TMEM258P61165 79 aa10□□□□□ -0.81
USP3-204ENST00000540797 CELA1Q9UNI1 258 aa10□□□□□ -0.81
USP3-204ENST00000540797 SS18L2Q9UHA2 77 aa10□□□□□ -0.81
USP3-204ENST00000540797 A0A1B0GUV1 79 aa10□□□□□ -0.81
USP3-204ENST00000540797 C3orf84H3BNL1 204 aa9.99□□□□□ -0.81
USP3-204ENST00000540797 URB1-AS1Q96HZ7 61 aa9.99□□□□□ -0.81
USP3-204ENST00000540797 RPL28P46779 137 aaKnown RBP9.99□□□□□ -0.81
USP3-204ENST00000540797 C2orf91Q6ZV80 131 aa9.98□□□□□ -0.81
USP3-204ENST00000540797 ACANP16112 2415 aa9.98□□□□□ -0.81
USP3-204ENST00000540797 AMELXQ99217 191 aa9.97□□□□□ -0.81
USP3-204ENST00000540797 ANKRD17O75179 2603 aaKnown RBP9.97□□□□□ -0.81
USP3-204ENST00000540797 C11orf72Q8NBR9 251 aa9.97□□□□□ -0.81
USP3-204ENST00000540797 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.96□□□□□ -0.81
USP3-204ENST00000540797 B5MCH6 92 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms