RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 LENEPQ9Y5L5 61 aa6.9□□□□□ -1.3
CTNNA1-243ENST00000540387 SONP18583 2426 aaKnown RBP6.9□□□□□ -1.3
CTNNA1-243ENST00000540387 IGHV3-49A0A0A0MS15 119 aa6.9□□□□□ -1.31
CTNNA1-243ENST00000540387 TRBV6-5A0A0K0K1A5 114 aa6.9□□□□□ -1.31
CTNNA1-243ENST00000540387 TRBV12-3P01733 135 aa6.9□□□□□ -1.31
CTNNA1-243ENST00000540387 RPL28P46779 137 aaKnown RBP6.9□□□□□ -1.31
CTNNA1-243ENST00000540387 RPL11P62913 178 aaKnown RBP6.9□□□□□ -1.31
CTNNA1-243ENST00000540387 MRPS36P82909 103 aaKnown RBP6.9□□□□□ -1.31
CTNNA1-243ENST00000540387 KNCNA6PVL3 124 aa6.89□□□□□ -1.31
CTNNA1-243ENST00000540387 RNASE4P34096 147 aaKnown RBP6.89□□□□□ -1.31
CTNNA1-243ENST00000540387 MINOS1Q5TGZ0 78 aa6.89□□□□□ -1.31
CTNNA1-243ENST00000540387 MINOS1-NBL1R4GNA1 71 aa6.89□□□□□ -1.31
CTNNA1-243ENST00000540387 TRAV23DV6A0A075B6W5 121 aa6.89□□□□□ -1.31
CTNNA1-243ENST00000540387 LYPD5Q6UWN5 251 aa6.89□□□□□ -1.31
CTNNA1-243ENST00000540387 OTOGQ6ZRI0 2925 aa6.89□□□□□ -1.31
CTNNA1-243ENST00000540387 LINC00308Q8TCZ7 52 aa6.89□□□□□ -1.31
CTNNA1-243ENST00000540387 ZNF561-AS1K7EIQ3 104 aa6.88□□□□□ -1.31
CTNNA1-243ENST00000540387 LINC00482Q8N8I6 264 aa6.88□□□□□ -1.31
CTNNA1-243ENST00000540387 C20orf173Q96LM9 149 aa6.88□□□□□ -1.31
CTNNA1-243ENST00000540387 LINC00474Q9P2X8 69 aa6.88□□□□□ -1.31
CTNNA1-243ENST00000540387 SETXQ7Z333 2677 aaKnown RBP6.88□□□□□ -1.31
CTNNA1-243ENST00000540387 CD28P10747 220 aa6.87□□□□□ -1.31
CTNNA1-243ENST00000540387 HOXD3P31249 432 aaPredicted RBP6.87□□□□□ -1.31
CTNNA1-243ENST00000540387 FAM74A4Q5TZK3 123 aa6.87□□□□□ -1.31
CTNNA1-243ENST00000540387 FAM104AQ969W3 186 aa6.87□□□□□ -1.31
CTNNA1-243ENST00000540387 RNASE13Q5GAN3 156 aaKnown RBP6.86□□□□□ -1.31
CTNNA1-243ENST00000540387 WFDC9Q8NEX5 89 aa6.86□□□□□ -1.31
CTNNA1-243ENST00000540387 MXRA5Q9NR99 2828 aa6.86□□□□□ -1.31
CTNNA1-243ENST00000540387 DEFB1P60022 68 aa6.86□□□□□ -1.31
CTNNA1-243ENST00000540387 KRTAP1-1Q07627 177 aa6.86□□□□□ -1.31
CTNNA1-243ENST00000540387 IL17DQ8TAD2 202 aa6.86□□□□□ -1.31
CTNNA1-243ENST00000540387 M0QY20 66 aa6.85□□□□□ -1.31
CTNNA1-243ENST00000540387 SOSTDC1Q6X4U4 206 aa6.85□□□□□ -1.31
CTNNA1-243ENST00000540387 OBSCN-AS1Q96MR7 158 aa6.85□□□□□ -1.31
CTNNA1-243ENST00000540387 NDUFA1O15239 70 aa6.85□□□□□ -1.31
CTNNA1-243ENST00000540387 NPBQ8NG41 125 aa6.85□□□□□ -1.31
CTNNA1-243ENST00000540387 SMR3AQ99954 134 aa6.85□□□□□ -1.31
CTNNA1-243ENST00000540387 MTORP42345 2549 aa6.84□□□□□ -1.31
CTNNA1-243ENST00000540387 FAM19A1Q7Z5A9 133 aa6.84□□□□□ -1.31
CTNNA1-243ENST00000540387 C6orf226Q5I0X4 101 aa6.84□□□□□ -1.31
CTNNA1-243ENST00000540387 FSHBP01225 129 aa6.83□□□□□ -1.32
CTNNA1-243ENST00000540387 SS18Q15532 418 aa6.83□□□□□ -1.32
CTNNA1-243ENST00000540387 DEFB112Q30KQ8 113 aa6.83□□□□□ -1.32
CTNNA1-243ENST00000540387 C15orf32Q32M92 178 aa6.83□□□□□ -1.32
CTNNA1-243ENST00000540387 ZNF625Q96I27 306 aaPredicted RBP6.83□□□□□ -1.32
CTNNA1-243ENST00000540387 HIVEP1P15822 2718 aa6.83□□□□□ -1.32
CTNNA1-243ENST00000540387 TRBV7-6A0A0J9YX20 115 aa6.83□□□□□ -1.32
CTNNA1-243ENST00000540387 NCR3O14931 201 aa6.83□□□□□ -1.32
CTNNA1-243ENST00000540387 PF4P02776 101 aa6.83□□□□□ -1.32
CTNNA1-243ENST00000540387 CCKP06307 115 aa6.83□□□□□ -1.32
CTNNA1-243ENST00000540387 Q8N6K4 173 aa6.83□□□□□ -1.32
CTNNA1-243ENST00000540387 HIVEP2P31629 2446 aa6.82□□□□□ -1.32
CTNNA1-243ENST00000540387 TMEM89A2RUT3 159 aa6.82□□□□□ -1.32
CTNNA1-243ENST00000540387 CYSRT1A8MQ03 144 aa6.82□□□□□ -1.32
CTNNA1-243ENST00000540387 SOCS3O14543 225 aa6.82□□□□□ -1.32
CTNNA1-243ENST00000540387 LY6EQ16553 131 aa6.82□□□□□ -1.32
CTNNA1-243ENST00000540387 HIST2H2BDQ6DRA6 164 aa6.82□□□□□ -1.32
CTNNA1-243ENST00000540387 ENHOQ6UWT2 76 aa6.82□□□□□ -1.32
CTNNA1-243ENST00000540387 A0A087WYN8 130 aa6.82□□□□□ -1.32
CTNNA1-243ENST00000540387 H3BUX3 64 aa6.82□□□□□ -1.32
CTNNA1-243ENST00000540387 RBM3P98179 157 aaKnown RBP6.82□□□□□ -1.32
CTNNA1-243ENST00000540387 KLKP1Q107X0 134 aa6.82□□□□□ -1.32
CTNNA1-243ENST00000540387 APRG1Q8IVJ8 170 aa6.82□□□□□ -1.32
CTNNA1-243ENST00000540387 COPS9Q8WXC6 57 aa6.82□□□□□ -1.32
CTNNA1-243ENST00000540387 Q9H8V8 135 aa6.82□□□□□ -1.32
CTNNA1-243ENST00000540387 F6UB75 175 aa6.81□□□□□ -1.32
CTNNA1-243ENST00000540387 CLEC19AQ6UXS0 136 aa6.81□□□□□ -1.32
CTNNA1-243ENST00000540387 FAM110DQ8TAY7 271 aaPredicted RBP6.81□□□□□ -1.32
CTNNA1-243ENST00000540387 U3KQE9 123 aa6.81□□□□□ -1.32
CTNNA1-243ENST00000540387 TRAV7A0A075B6U4 112 aa6.81□□□□□ -1.32
CTNNA1-243ENST00000540387 F8WEM9 126 aa6.81□□□□□ -1.32
CTNNA1-243ENST00000540387 LY6G6DO95868 133 aa6.81□□□□□ -1.32
CTNNA1-243ENST00000540387 ATP5EP2Q5VTU8 51 aa6.81□□□□□ -1.32
CTNNA1-243ENST00000540387 Q8N9W7 124 aa6.81□□□□□ -1.32
CTNNA1-243ENST00000540387 RMI2Q96E14 147 aa6.81□□□□□ -1.32
CTNNA1-243ENST00000540387 CDKN2A-AS1Q9UH64 79 aa6.81□□□□□ -1.32
CTNNA1-243ENST00000540387 SNURFQ9Y675 71 aa6.81□□□□□ -1.32
CTNNA1-243ENST00000540387 IGHV4-59P01825 116 aa6.8□□□□□ -1.32
CTNNA1-243ENST00000540387 S100A7L2Q5SY68 101 aa6.8□□□□□ -1.32
CTNNA1-243ENST00000540387 CCDC140Q96MF4 163 aa6.8□□□□□ -1.32
CTNNA1-243ENST00000540387 OVOL2Q9BRP0 275 aa6.8□□□□□ -1.32
CTNNA1-243ENST00000540387 ANK3Q12955 4377 aaKnown RBP6.79□□□□□ -1.32
CTNNA1-243ENST00000540387 A6NDX4 124 aa6.79□□□□□ -1.32
CTNNA1-243ENST00000540387 Q6YL49 198 aa6.78□□□□□ -1.32
CTNNA1-243ENST00000540387 CUBNO60494 3623 aa6.78□□□□□ -1.32
CTNNA1-243ENST00000540387 F8P00451 2351 aa6.78□□□□□ -1.32
CTNNA1-243ENST00000540387 IGHV7-81A0A0B4J1V7 117 aa6.78□□□□□ -1.32
CTNNA1-243ENST00000540387 OXLD1Q5BKU9 147 aa6.78□□□□□ -1.32
CTNNA1-243ENST00000540387 PIK3CD-AS1Q5SR53 167 aa6.78□□□□□ -1.32
CTNNA1-243ENST00000540387 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.78□□□□□ -1.32
CTNNA1-243ENST00000540387 C5orf56Q8N8D9 126 aa6.78□□□□□ -1.32
CTNNA1-243ENST00000540387 BLCAPP62952 87 aa6.77□□□□□ -1.33
CTNNA1-243ENST00000540387 PMAIP1Q13794 54 aa6.77□□□□□ -1.33
CTNNA1-243ENST00000540387 C4orf48Q5BLP8 95 aa6.77□□□□□ -1.33
CTNNA1-243ENST00000540387 MPLKIPQ8TAP9 179 aa6.77□□□□□ -1.33
CTNNA1-243ENST00000540387 MOB4Q9Y3A3 225 aa6.77□□□□□ -1.33
CTNNA1-243ENST00000540387 TRAV13-2A0A0B4J235 113 aa6.77□□□□□ -1.33
CTNNA1-243ENST00000540387 MIR7-3HGQ8N6C7 128 aa6.77□□□□□ -1.33
CTNNA1-243ENST00000540387 TRBV10-3A0A0K0K1G6 114 aa6.76□□□□□ -1.33
CTNNA1-243ENST00000540387 BCE1O60756 84 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms