RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 COX6A2Q02221 97 aa12.63□□□□□ -0.39
TNFRSF1A-213ENST00000540022 KRTAP26-1Q6PEX3 210 aa12.63□□□□□ -0.39
TNFRSF1A-213ENST00000540022 C1orf43Q9BWL3 253 aa12.63□□□□□ -0.39
TNFRSF1A-213ENST00000540022 LINC01545Q5VT33 79 aa12.62□□□□□ -0.39
TNFRSF1A-213ENST00000540022 IGLC3P0DOY3 106 aa12.62□□□□□ -0.39
TNFRSF1A-213ENST00000540022 TINCRA0A1B0GVN0 87 aa12.61□□□□□ -0.39
TNFRSF1A-213ENST00000540022 GAGE12HA6NDE8 117 aa12.61□□□□□ -0.39
TNFRSF1A-213ENST00000540022 C11orf86A6NJI1 115 aa12.6□□□□□ -0.39
TNFRSF1A-213ENST00000540022 SEC11AP67812 179 aa12.6□□□□□ -0.39
TNFRSF1A-213ENST00000540022 CD164L2Q6UWJ8 174 aa12.6□□□□□ -0.39
TNFRSF1A-213ENST00000540022 NFE4Q86UQ8 179 aa12.6□□□□□ -0.39
TNFRSF1A-213ENST00000540022 RMI2Q96E14 147 aa12.6□□□□□ -0.39
TNFRSF1A-213ENST00000540022 CHAC1Q9BUX1 264 aa12.6□□□□□ -0.39
TNFRSF1A-213ENST00000540022 GEMIN7Q9H840 131 aaKnown RBP12.6□□□□□ -0.39
TNFRSF1A-213ENST00000540022 IGHV3OR16-9A0A0B4J2B5 98 aa12.59□□□□□ -0.39
TNFRSF1A-213ENST00000540022 HERVK_113P63121 156 aa12.59□□□□□ -0.39
TNFRSF1A-213ENST00000540022 FOXI1Q12951 378 aa12.59□□□□□ -0.39
TNFRSF1A-213ENST00000540022 FAT2Q9NYQ8 4349 aa12.59□□□□□ -0.39
TNFRSF1A-213ENST00000540022 DNAH17Q9UFH2 4485 aa12.58□□□□□ -0.39
TNFRSF1A-213ENST00000540022 C6orf223Q8N319 242 aa12.58□□□□□ -0.4
TNFRSF1A-213ENST00000540022 DPM2O94777 84 aa12.57□□□□□ -0.4
TNFRSF1A-213ENST00000540022 Q6ZRN7 208 aaPredicted RBP12.57□□□□□ -0.4
TNFRSF1A-213ENST00000540022 MAPKAPK5-AS1Q8N8E1 139 aa12.57□□□□□ -0.4
TNFRSF1A-213ENST00000540022 CDKN2A-AS1Q9UH64 79 aa12.57□□□□□ -0.4
TNFRSF1A-213ENST00000540022 IGLV5-45A0A087WSX0 123 aa12.57□□□□□ -0.4
TNFRSF1A-213ENST00000540022 C20orf202A1L168 122 aa12.57□□□□□ -0.4
TNFRSF1A-213ENST00000540022 ZNF22P17026 224 aaPredicted RBP12.57□□□□□ -0.4
TNFRSF1A-213ENST00000540022 C5orf38Q86SI9 138 aa12.57□□□□□ -0.4
TNFRSF1A-213ENST00000540022 LINC00469Q8N7U9 141 aa12.57□□□□□ -0.4
TNFRSF1A-213ENST00000540022 TM2D2Q9BX73 214 aa12.57□□□□□ -0.4
TNFRSF1A-213ENST00000540022 HECTD4Q9Y4D8 3996 aa12.56□□□□□ -0.4
TNFRSF1A-213ENST00000540022 IGKCP01834 107 aa12.56□□□□□ -0.4
TNFRSF1A-213ENST00000540022 PLNP26678 52 aa12.56□□□□□ -0.4
TNFRSF1A-213ENST00000540022 COX11Q9Y6N1 276 aa12.56□□□□□ -0.4
TNFRSF1A-213ENST00000540022 LOC105371267A0A1B0GV96 52 aa12.55□□□□□ -0.4
TNFRSF1A-213ENST00000540022 AKR1D1P51857 326 aa12.55□□□□□ -0.4
TNFRSF1A-213ENST00000540022 C1orf134Q5TEV5 83 aa12.55□□□□□ -0.4
TNFRSF1A-213ENST00000540022 COX7A2LO14548 114 aa12.54□□□□□ -0.4
TNFRSF1A-213ENST00000540022 TMEM170BQ5T4T1 132 aa12.54□□□□□ -0.4
TNFRSF1A-213ENST00000540022 A0A087WZ39 114 aa12.53□□□□□ -0.4
TNFRSF1A-213ENST00000540022 SCGB1D1O95968 90 aa12.53□□□□□ -0.4
TNFRSF1A-213ENST00000540022 JOSD1Q15040 202 aaPredicted RBP12.53□□□□□ -0.4
TNFRSF1A-213ENST00000540022 ATOH7Q8N100 152 aa12.53□□□□□ -0.4
TNFRSF1A-213ENST00000540022 PSCAO43653 123 aa12.52□□□□□ -0.41
TNFRSF1A-213ENST00000540022 PYY3Q5JQD4 70 aa12.51□□□□□ -0.41
TNFRSF1A-213ENST00000540022 H3BRM9 83 aa12.5□□□□□ -0.41
TNFRSF1A-213ENST00000540022 RTL8CO15255 209 aa12.5□□□□□ -0.41
TNFRSF1A-213ENST00000540022 SPINK8P0C7L1 97 aa12.5□□□□□ -0.41
TNFRSF1A-213ENST00000540022 MALP21145 153 aa12.5□□□□□ -0.41
TNFRSF1A-213ENST00000540022 TMEM223A0PJW6 202 aa12.49□□□□□ -0.41
TNFRSF1A-213ENST00000540022 SMIM1B2RUZ4 78 aa12.49□□□□□ -0.41
TNFRSF1A-213ENST00000540022 LINC01561Q8N1V8 128 aa12.48□□□□□ -0.41
TNFRSF1A-213ENST00000540022 STPG4Q8N801 248 aa12.48□□□□□ -0.41
TNFRSF1A-213ENST00000540022 IGHV3-64A0A075B6Q5 118 aa12.47□□□□□ -0.41
TNFRSF1A-213ENST00000540022 LECT2O14960 151 aa12.47□□□□□ -0.41
TNFRSF1A-213ENST00000540022 WFDC2Q14508 124 aa12.47□□□□□ -0.41
TNFRSF1A-213ENST00000540022 C15orf56Q8N910 161 aa12.47□□□□□ -0.41
TNFRSF1A-213ENST00000540022 PKHD1P08F94 4074 aa12.47□□□□□ -0.41
TNFRSF1A-213ENST00000540022 IGHV1-58A0A0C4DH39 117 aa12.46□□□□□ -0.42
TNFRSF1A-213ENST00000540022 LRCOL1A6NCL2 159 aa12.46□□□□□ -0.42
TNFRSF1A-213ENST00000540022 USP17L23D6RBM5 183 aa12.46□□□□□ -0.42
TNFRSF1A-213ENST00000540022 APOMO95445 188 aa12.46□□□□□ -0.42
TNFRSF1A-213ENST00000540022 IGLV5-39A0A0G2JS06 123 aa12.45□□□□□ -0.42
TNFRSF1A-213ENST00000540022 hDV102S1A0JD36 115 aa12.45□□□□□ -0.42
TNFRSF1A-213ENST00000540022 MAJINQ3KP22 176 aa12.45□□□□□ -0.42
TNFRSF1A-213ENST00000540022 ORAOV1Q8WV07 137 aa12.45□□□□□ -0.42
TNFRSF1A-213ENST00000540022 PKD1P98161 4303 aa12.44□□□□□ -0.42
TNFRSF1A-213ENST00000540022 HIGD2BQ4VC39 106 aa12.43□□□□□ -0.42
TNFRSF1A-213ENST00000540022 CDPF1Q6NVV7 123 aa12.43□□□□□ -0.42
TNFRSF1A-213ENST00000540022 CFAP161Q6P656 301 aa12.43□□□□□ -0.42
TNFRSF1A-213ENST00000540022 LINC00336Q6ZUF6 198 aa12.43□□□□□ -0.42
TNFRSF1A-213ENST00000540022 HERVK_113P61574 105 aa12.42□□□□□ -0.42
TNFRSF1A-213ENST00000540022 LINC00526Q96FQ7 95 aa12.42□□□□□ -0.42
TNFRSF1A-213ENST00000540022 TOMM7Q9P0U1 55 aa12.42□□□□□ -0.42
TNFRSF1A-213ENST00000540022 A0A087WTM6 91 aa12.42□□□□□ -0.42
TNFRSF1A-213ENST00000540022 GVQW2A0A096LPI5 108 aaPredicted RBP12.42□□□□□ -0.42
TNFRSF1A-213ENST00000540022 TNP2Q05952 138 aa12.42□□□□□ -0.42
TNFRSF1A-213ENST00000540022 SPAG11BQ08648 103 aa12.42□□□□□ -0.42
TNFRSF1A-213ENST00000540022 KIAA0087Q14695 138 aa12.42□□□□□ -0.42
TNFRSF1A-213ENST00000540022 ANKRD39Q53RE8 183 aa12.42□□□□□ -0.42
TNFRSF1A-213ENST00000540022 DYNC1H1Q14204 4646 aaKnown RBP12.41□□□□□ -0.42
TNFRSF1A-213ENST00000540022 E9PLD3 99 aa12.41□□□□□ -0.42
TNFRSF1A-213ENST00000540022 COX7B2Q8TF08 81 aa12.4□□□□□ -0.42
TNFRSF1A-213ENST00000540022 IGKV2D-26A0A0A0MRZ7 120 aa12.39□□□□□ -0.43
TNFRSF1A-213ENST00000540022 A0A1B0GVY2 172 aa12.39□□□□□ -0.43
TNFRSF1A-213ENST00000540022 LEPROTO15243 131 aa12.39□□□□□ -0.43
TNFRSF1A-213ENST00000540022 TSPEAR-AS2P59090 65 aa12.39□□□□□ -0.43
TNFRSF1A-213ENST00000540022 Q8IZM0 81 aa12.39□□□□□ -0.43
TNFRSF1A-213ENST00000540022 DNAH11Q96DT5 4516 aa12.39□□□□□ -0.43
TNFRSF1A-213ENST00000540022 HSBP1L1C9JCN9 74 aa12.38□□□□□ -0.43
TNFRSF1A-213ENST00000540022 ZNF561-AS1K7EIQ3 104 aa12.38□□□□□ -0.43
TNFRSF1A-213ENST00000540022 PRSS2P07478 247 aa12.37□□□□□ -0.43
TNFRSF1A-213ENST00000540022 C6orf226Q5I0X4 101 aa12.37□□□□□ -0.43
TNFRSF1A-213ENST00000540022 NTN5Q8WTR8 489 aaPredicted RBP12.37□□□□□ -0.43
TNFRSF1A-213ENST00000540022 PLEKHB2Q96CS7 222 aa12.37□□□□□ -0.43
TNFRSF1A-213ENST00000540022 KIAA1109Q2LD37 5005 aa12.36□□□□□ -0.43
TNFRSF1A-213ENST00000540022 J3QQQ9 107 aa12.36□□□□□ -0.43
TNFRSF1A-213ENST00000540022 C14orf177Q52M58 125 aa12.36□□□□□ -0.43
TNFRSF1A-213ENST00000540022 C2orf82Q6UX34 121 aa12.36□□□□□ -0.43
TNFRSF1A-213ENST00000540022 Q8N814 137 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms