RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 C5orf38Q86SI9 138 aa12.02□□□□□ -0.49
CLIP1-211ENST00000539080 Q8N8P6 123 aa12.02□□□□□ -0.49
CLIP1-211ENST00000539080 C2orf48Q96LS8 159 aa12.02□□□□□ -0.49
CLIP1-211ENST00000539080 OPRPNQ99935 248 aaPredicted RBP12.02□□□□□ -0.49
CLIP1-211ENST00000539080 IFITM10A6NMD0 228 aa12.01□□□□□ -0.49
CLIP1-211ENST00000539080 OR10D4PQ8NGN7 298 aa12.01□□□□□ -0.49
CLIP1-211ENST00000539080 IGHV3OR16-9A0A0B4J2B5 98 aa12□□□□□ -0.49
CLIP1-211ENST00000539080 OXTP01178 125 aa12□□□□□ -0.49
CLIP1-211ENST00000539080 ORMDL2Q53FV1 153 aa12□□□□□ -0.49
CLIP1-211ENST00000539080 STPG4Q8N801 248 aa12□□□□□ -0.49
CLIP1-211ENST00000539080 C7orf33Q8WU49 177 aa12□□□□□ -0.49
CLIP1-211ENST00000539080 HERC1Q15751 4861 aa11.99□□□□□ -0.49
CLIP1-211ENST00000539080 IGLV4-3A0A075B6K6 122 aa11.99□□□□□ -0.49
CLIP1-211ENST00000539080 TMEM141Q96I45 108 aa11.99□□□□□ -0.49
CLIP1-211ENST00000539080 CAMK2N2Q96S95 79 aa11.99□□□□□ -0.49
CLIP1-211ENST00000539080 NXT2Q9NPJ8 142 aaKnown RBP11.99□□□□□ -0.49
CLIP1-211ENST00000539080 CYSLTR1Q9Y271 337 aa11.99□□□□□ -0.49
CLIP1-211ENST00000539080 F8WDY8 70 aa11.98□□□□□ -0.49
CLIP1-211ENST00000539080 NPSP0C0P6 89 aa11.98□□□□□ -0.49
CLIP1-211ENST00000539080 SPAG11BQ08648 103 aa11.98□□□□□ -0.49
CLIP1-211ENST00000539080 Q6ZRU5 148 aa11.98□□□□□ -0.49
CLIP1-211ENST00000539080 COMMD7Q86VX2 200 aa11.98□□□□□ -0.49
CLIP1-211ENST00000539080 TGIF2-C20orf24A0A0A6YYL0 155 aa11.97□□□□□ -0.49
CLIP1-211ENST00000539080 LOC107984640A0A0U1RRK4 108 aa11.97□□□□□ -0.49
CLIP1-211ENST00000539080 S100PP25815 95 aa11.97□□□□□ -0.49
CLIP1-211ENST00000539080 C2orf66Q6UXQ4 117 aa11.97□□□□□ -0.49
CLIP1-211ENST00000539080 G0S2P27469 103 aa11.96□□□□□ -0.49
CLIP1-211ENST00000539080 HNRNPA3P51991 378 aaKnown RBP11.96□□□□□ -0.49
CLIP1-211ENST00000539080 TEX43Q6ZNM6 134 aa11.96□□□□□ -0.49
CLIP1-211ENST00000539080 PTTG1IPP53801 180 aa11.95□□□□□ -0.5
CLIP1-211ENST00000539080 RNF151Q2KHN1 245 aa11.95□□□□□ -0.5
CLIP1-211ENST00000539080 C10orf91Q5T1B1 145 aa11.95□□□□□ -0.5
CLIP1-211ENST00000539080 Q6ZN92 141 aa11.95□□□□□ -0.5
CLIP1-211ENST00000539080 ORAOV1Q8WV07 137 aa11.95□□□□□ -0.5
CLIP1-211ENST00000539080 C2orf88Q9BSF0 95 aa11.95□□□□□ -0.5
CLIP1-211ENST00000539080 GNB1LQ9BYB4 327 aa11.95□□□□□ -0.5
CLIP1-211ENST00000539080 COX19Q49B96 90 aa11.94□□□□□ -0.5
CLIP1-211ENST00000539080 LINC00242Q5T6M2 205 aa11.94□□□□□ -0.5
CLIP1-211ENST00000539080 A0A087WZ39 114 aa11.93□□□□□ -0.5
CLIP1-211ENST00000539080 AMELXQ99217 191 aa11.93□□□□□ -0.5
CLIP1-211ENST00000539080 MRPL35Q9NZE8 188 aaKnown RBP11.93□□□□□ -0.5
CLIP1-211ENST00000539080 UBE2D1P51668 147 aa11.92□□□□□ -0.5
CLIP1-211ENST00000539080 RHEBQ15382 184 aa11.92□□□□□ -0.5
CLIP1-211ENST00000539080 CARHSP1Q9Y2V2 147 aaKnown RBP11.92□□□□□ -0.5
CLIP1-211ENST00000539080 IGIPA6NJ69 53 aa11.91□□□□□ -0.5
CLIP1-211ENST00000539080 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-211ENST00000539080 NDUFA1O15239 70 aa11.91□□□□□ -0.5
CLIP1-211ENST00000539080 GAGE2BQ13066 116 aa11.91□□□□□ -0.5
CLIP1-211ENST00000539080 KIAA1644Q3SXP7 199 aa11.91□□□□□ -0.5
CLIP1-211ENST00000539080 PAPPA-AS1Q5QFB9 102 aa11.91□□□□□ -0.5
CLIP1-211ENST00000539080 LINC01561Q8N1V8 128 aa11.91□□□□□ -0.5
CLIP1-211ENST00000539080 VCX2Q9H322 139 aa11.91□□□□□ -0.5
CLIP1-211ENST00000539080 PKHD1L1Q86WI1 4243 aa11.91□□□□□ -0.5
CLIP1-211ENST00000539080 LINC00173Q6ZV60 143 aa11.9□□□□□ -0.5
CLIP1-211ENST00000539080 MT-ND6P03923 174 aa11.89□□□□□ -0.51
CLIP1-211ENST00000539080 FAM19A3Q7Z5A8 133 aa11.89□□□□□ -0.51
CLIP1-211ENST00000539080 TIMM17AQ99595 171 aa11.89□□□□□ -0.51
CLIP1-211ENST00000539080 LINC01549A6NIU2 74 aa11.88□□□□□ -0.51
CLIP1-211ENST00000539080 PRR3P79522 188 aaKnown RBP11.88□□□□□ -0.51
CLIP1-211ENST00000539080 RPL18AQ02543 176 aaKnown RBP11.88□□□□□ -0.51
CLIP1-211ENST00000539080 TOMM6Q96B49 74 aa11.88□□□□□ -0.51
CLIP1-211ENST00000539080 RPS10P5Q9NQ39 176 aa11.88□□□□□ -0.51
CLIP1-211ENST00000539080 LRP1Q07954 4544 aaKnown RBP11.88□□□□□ -0.51
CLIP1-211ENST00000539080 SEC11AP67812 179 aa11.87□□□□□ -0.51
CLIP1-211ENST00000539080 ALKBH7Q9BT30 221 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-211ENST00000539080 FAT3Q8TDW7 4589 aa11.87□□□□□ -0.51
CLIP1-211ENST00000539080 LINC01546A6NGU7 62 aa11.86□□□□□ -0.51
CLIP1-211ENST00000539080 TLX1NBP0CAT3 122 aa11.86□□□□□ -0.51
CLIP1-211ENST00000539080 KIAA0087Q14695 138 aa11.86□□□□□ -0.51
CLIP1-211ENST00000539080 A0A0J9YXV3 536 aa11.85□□□□□ -0.51
CLIP1-211ENST00000539080 ZC2HC1BQ5TFG8 222 aa11.85□□□□□ -0.51
CLIP1-211ENST00000539080 UNQ6190/PRO20217Q6UXQ8 127 aa11.85□□□□□ -0.51
CLIP1-211ENST00000539080 ERASQ7Z444 233 aa11.85□□□□□ -0.51
CLIP1-211ENST00000539080 HERVK_113P63121 156 aa11.84□□□□□ -0.51
CLIP1-211ENST00000539080 C10orf25Q5T742 122 aa11.84□□□□□ -0.51
CLIP1-211ENST00000539080 MRPL18Q9H0U6 180 aaKnown RBP11.84□□□□□ -0.51
CLIP1-211ENST00000539080 C6orf48Q9UBA6 75 aa11.84□□□□□ -0.51
CLIP1-211ENST00000539080 TRBV30A0A0K0K1B3 111 aa11.83□□□□□ -0.52
CLIP1-211ENST00000539080 A0A1W2PNN7 141 aa11.83□□□□□ -0.52
CLIP1-211ENST00000539080 C9orf116Q5BN46 136 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-211ENST00000539080 Q6ZRP5 223 aa11.83□□□□□ -0.52
CLIP1-211ENST00000539080 FABP9Q0Z7S8 132 aa11.82□□□□□ -0.52
CLIP1-211ENST00000539080 SCGB3A1Q96QR1 104 aa11.82□□□□□ -0.52
CLIP1-211ENST00000539080 SERTAD4-AS1Q5TG53 156 aa11.81□□□□□ -0.52
CLIP1-211ENST00000539080 PRSS2P07478 247 aa11.8□□□□□ -0.52
CLIP1-211ENST00000539080 NDUFA5Q16718 116 aa11.8□□□□□ -0.52
CLIP1-211ENST00000539080 PACRGQ96M98 296 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-211ENST00000539080 GEMIN7Q9H840 131 aaKnown RBP11.8□□□□□ -0.52
CLIP1-211ENST00000539080 SNAPINO95295 136 aa11.79□□□□□ -0.52
CLIP1-211ENST00000539080 FA2HQ7L5A8 372 aa11.79□□□□□ -0.52
CLIP1-211ENST00000539080 Q8IZM0 81 aa11.79□□□□□ -0.52
CLIP1-211ENST00000539080 SVBPQ8N300 66 aa11.79□□□□□ -0.52
CLIP1-211ENST00000539080 SMCO4Q9NRQ5 59 aa11.79□□□□□ -0.52
CLIP1-211ENST00000539080 APOC3P02656 99 aa11.78□□□□□ -0.52
CLIP1-211ENST00000539080 SPINK6Q6UWN8 80 aa11.78□□□□□ -0.52
CLIP1-211ENST00000539080 C2orf82Q6UX34 121 aa11.78□□□□□ -0.52
CLIP1-211ENST00000539080 CDKN2A-AS1Q9UH64 79 aa11.78□□□□□ -0.52
CLIP1-211ENST00000539080 NDUFC2-KCTD14E9PQ53 114 aa11.77□□□□□ -0.53
CLIP1-211ENST00000539080 CKS1BP61024 79 aa11.77□□□□□ -0.53
CLIP1-211ENST00000539080 C6orf226Q5I0X4 101 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms