RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 COL27A1Q8IZC6 1860 aaPredicted RBP1.67□□□□□ -2.14
SKA3-207ENST00000536239 RP1P56715 2156 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 MALRD1Q5VYJ5 2156 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 DOCK10Q96BY6 2186 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 IGLV4-3A0A075B6K6 122 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 IGKV2-40A0A087WW87 121 aaPredicted RBP1.66□□□□□ -2.14
SKA3-207ENST00000536239 LOC110117498A0A087WWA1 95 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 TRAV21A0A0B4J279 112 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 A0A0J9YXV3 536 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 LOC101927531A0A1B0GV80 90 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 C10orf142B7Z368 130 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 C3orf84H3BNL1 204 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 CHKB-CPT1BH3BT56 60 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 C19orf84I3L1E1 186 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 BPY2O14599 106 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 NDUFB1O75438 58 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 IGKV2D-40P01614 121 aaPredicted RBP1.66□□□□□ -2.14
SKA3-207ENST00000536239 CGB3P0DN86 165 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 CGB7P0DN87 165 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 ELOF1P60002 83 aaKnown RBP1.66□□□□□ -2.14
SKA3-207ENST00000536239 C9orf116Q5BN46 136 aaPredicted RBP1.66□□□□□ -2.14
SKA3-207ENST00000536239 MIR7-3HGQ8N6C7 128 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 C20orf203Q8NBC4 194 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 WFDC9Q8NEX5 89 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 SPTSSBQ8NFR3 76 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 RPL39LQ96EH5 51 aaKnown RBP1.66□□□□□ -2.14
SKA3-207ENST00000536239 DEFB126Q9BYW3 111 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 OCR1Q9BZK8 76 aa1.66□□□□□ -2.14
SKA3-207ENST00000536239 TNCP24821 2201 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 IGHV3-64A0A075B6Q5 118 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 IGHV1OR15-1A0A075B7D0 117 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 IGHV3-15A0A0B4J1V0 119 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 LCE6AA0A183 80 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 I3L2K1 104 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 NCR3O14931 201 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 IGHV3-48P01763 117 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 CRPP02741 224 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 IGKV1-16P04430 117 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 MGPP08493 103 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 RPL39P62891 51 aaKnown RBP1.65□□□□□ -2.15
SKA3-207ENST00000536239 PRR3P79522 188 aaKnown RBP1.65□□□□□ -2.15
SKA3-207ENST00000536239 HAMPP81172 84 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 DEFB110Q30KQ9 67 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 C9orf129Q5T035 196 aaKnown RBP1.65□□□□□ -2.15
SKA3-207ENST00000536239 HCP5Q6MZN7 132 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 Q6ZQT0 140 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 SCXQ7RTU7 201 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 Q8TAT8 98 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 CDC42SE2Q9NRR3 84 aa1.65□□□□□ -2.15
SKA3-207ENST00000536239 IGLV3-12A0A075B6K2 115 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 TRBV10-1A0A0K0K1A3 114 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 A0A1B0GW54 56 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 IGKV2-29A2NJV5 120 aaPredicted RBP1.64□□□□□ -2.15
SKA3-207ENST00000536239 A6NED7 52 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 K7EQD1 137 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 K7EQG2 157 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 LECT2O14960 151 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 MRPL33O75394 65 aaKnown RBP1.64□□□□□ -2.15
SKA3-207ENST00000536239 LY6HO94772 140 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 LY6G6DO95868 133 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 IGKV1-17P01599 117 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 IGLV2-23P01705 113 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 RPL27AP46776 148 aaKnown RBP1.64□□□□□ -2.15
SKA3-207ENST00000536239 MOBPQ13875 183 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 C17orf58Q2M2W7 97 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 DEFB114Q30KQ6 69 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 FBXL19-AS1Q494R0 122 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 C6orf99Q4VX62 202 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 C9orf66Q5T8R8 295 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 FAM74A4Q5TZK3 123 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 C11orf72Q8NBR9 251 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 SMIM11BQ8TCY0 68 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 Q9BRP9 147 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 DEC1Q9P2X7 70 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 MED13Q9UHV7 2174 aa1.64□□□□□ -2.15
SKA3-207ENST00000536239 IGLV3-9A0A075B6K5 115 aa1.63□□□□□ -2.15
SKA3-207ENST00000536239 IGHV6-1A0A0B4J1U7 121 aa1.63□□□□□ -2.15
SKA3-207ENST00000536239 LRCOL1A6NCL2 159 aa1.63□□□□□ -2.15
SKA3-207ENST00000536239 LINC00315P59091 139 aa1.63□□□□□ -2.15
SKA3-207ENST00000536239 KRTAP10-10P60014 251 aa1.63□□□□□ -2.15
SKA3-207ENST00000536239 CASC2Q6XLA1 102 aa1.63□□□□□ -2.15
SKA3-207ENST00000536239 Q8N814 137 aa1.63□□□□□ -2.15
SKA3-207ENST00000536239 SPANXA2-OT1Q8N9U9 137 aa1.63□□□□□ -2.15
SKA3-207ENST00000536239 ZCCHC13Q8WW36 166 aaKnown RBP1.63□□□□□ -2.15
SKA3-207ENST00000536239 LEAP2Q969E1 77 aa1.63□□□□□ -2.15
SKA3-207ENST00000536239 RNF5Q99942 180 aa1.63□□□□□ -2.15
SKA3-207ENST00000536239 PRR15LQ9BU68 103 aa1.63□□□□□ -2.15
SKA3-207ENST00000536239 HIGD2AQ9BW72 106 aa1.63□□□□□ -2.15
SKA3-207ENST00000536239 CCL26Q9Y258 94 aa1.63□□□□□ -2.15
SKA3-207ENST00000536239 SEC16AO15027 2179 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 SDK2Q58EX2 2172 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 IGKV2-28A0A075B6P5 120 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 IGHV3-38A0A0C4DH36 116 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 K7EIM0 57 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 M0QY20 66 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 IGKV2D-28P01615 120 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 C10orf55Q5SWW7 151 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 REG3GQ6UW15 175 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 NTM-AS1Q6ZSK4 140 aa1.62□□□□□ -2.15
SKA3-207ENST00000536239 Q6ZTI0 123 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms