RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	CRP	P02741	224 aa		7.97	□□□□□ -1.13
CAPN1-223	ENST00000533079	PKIA	P61925	76 aa		7.97	□□□□□ -1.13
CAPN1-223	ENST00000533079	ZNF56	Q15929	161 aa		7.97	□□□□□ -1.13
CAPN1-223	ENST00000533079	FAM74A4	Q5TZK3	123 aa		7.97	□□□□□ -1.13
CAPN1-223	ENST00000533079	LINC01545	Q5VT33	79 aa		7.97	□□□□□ -1.13
CAPN1-223	ENST00000533079	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	7.97	□□□□□ -1.13
CAPN1-223	ENST00000533079	SDHAF1	A6NFY7	115 aa		7.96	□□□□□ -1.14
CAPN1-223	ENST00000533079	USP17L23	D6RBM5	183 aa		7.96	□□□□□ -1.14
CAPN1-223	ENST00000533079	CIRBP	Q14011	172 aa	Known RBP	7.96	□□□□□ -1.14
CAPN1-223	ENST00000533079	LINC00173	Q6ZV60	143 aa		7.96	□□□□□ -1.14
CAPN1-223	ENST00000533079	TOMM6	Q96B49	74 aa		7.96	□□□□□ -1.14
CAPN1-223	ENST00000533079	IFI27L1	Q96BM0	104 aa		7.96	□□□□□ -1.14
CAPN1-223	ENST00000533079	KIR2DL4	Q99706	377 aa		7.96	□□□□□ -1.14
CAPN1-223	ENST00000533079	TRBV10-1	A0A0K0K1A3	114 aa		7.95	□□□□□ -1.14
CAPN1-223	ENST00000533079		I3L3M4	83 aa		7.95	□□□□□ -1.14
CAPN1-223	ENST00000533079	ZNF664	Q8N3J9	261 aa		7.95	□□□□□ -1.14
CAPN1-223	ENST00000533079	TSTD3	H0UI37	97 aa		7.94	□□□□□ -1.14
CAPN1-223	ENST00000533079	MIA	Q16674	131 aa		7.94	□□□□□ -1.14
CAPN1-223	ENST00000533079	PRSS1	P07477	247 aa		7.93	□□□□□ -1.14
CAPN1-223	ENST00000533079	ENHO	Q6UWT2	76 aa		7.93	□□□□□ -1.14
CAPN1-223	ENST00000533079	SDIM1	Q6ZPB5	146 aa		7.93	□□□□□ -1.14
CAPN1-223	ENST00000533079	LINC01600	Q96MT4	127 aa		7.93	□□□□□ -1.14
CAPN1-223	ENST00000533079	VAMP8	Q9BV40	100 aa		7.93	□□□□□ -1.14
CAPN1-223	ENST00000533079		Q9UF83	564 aa		7.93	□□□□□ -1.14
CAPN1-223	ENST00000533079	TRAV12-1	A0A0B4J245	112 aa		7.92	□□□□□ -1.14
CAPN1-223	ENST00000533079	PANO1	I0J062	215 aa		7.92	□□□□□ -1.14
CAPN1-223	ENST00000533079	NPS	P0C0P6	89 aa		7.92	□□□□□ -1.14
CAPN1-223	ENST00000533079	ERAS	Q7Z444	233 aa		7.92	□□□□□ -1.14
CAPN1-223	ENST00000533079	TMEM141	Q96I45	108 aa		7.92	□□□□□ -1.14
CAPN1-223	ENST00000533079	CYSLTR1	Q9Y271	337 aa		7.92	□□□□□ -1.14
CAPN1-223	ENST00000533079	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	7.91	□□□□□ -1.14
CAPN1-223	ENST00000533079	CNBP	P62633	177 aa	Known RBP	7.91	□□□□□ -1.14
CAPN1-223	ENST00000533079	RPL36A	P83881	106 aa	Known RBP	7.91	□□□□□ -1.14
CAPN1-223	ENST00000533079	C2orf66	Q6UXQ4	117 aa		7.91	□□□□□ -1.14
CAPN1-223	ENST00000533079	NEXN-AS1	Q8NBZ9	246 aa		7.91	□□□□□ -1.14
CAPN1-223	ENST00000533079	RPL36AL	Q969Q0	106 aa	Known RBP	7.91	□□□□□ -1.14
CAPN1-223	ENST00000533079	TRBV7-3	A0A075B6L6	115 aa		7.9	□□□□□ -1.14
CAPN1-223	ENST00000533079	TRBV6-8	A0A0A6YYG3	113 aa		7.9	□□□□□ -1.14
CAPN1-223	ENST00000533079	IGIP	A6NJ69	53 aa		7.9	□□□□□ -1.14
CAPN1-223	ENST00000533079	TMEM262	E9PQX1	116 aa		7.9	□□□□□ -1.14
CAPN1-223	ENST00000533079	TSHB	P01222	138 aa		7.9	□□□□□ -1.14
CAPN1-223	ENST00000533079	ANG	P03950	147 aa	Known RBP	7.9	□□□□□ -1.14
CAPN1-223	ENST00000533079	UBE2D3	P61077	147 aa		7.9	□□□□□ -1.14
CAPN1-223	ENST00000533079	UBE2D2	P62837	147 aa		7.9	□□□□□ -1.14
CAPN1-223	ENST00000533079	C7orf33	Q8WU49	177 aa		7.9	□□□□□ -1.14
CAPN1-223	ENST00000533079	SCGB3A1	Q96QR1	104 aa		7.9	□□□□□ -1.14
CAPN1-223	ENST00000533079	TIMM17A	Q99595	171 aa		7.9	□□□□□ -1.14
CAPN1-223	ENST00000533079	ODF1	Q14990	250 aa		7.89	□□□□□ -1.15
CAPN1-223	ENST00000533079	MPV17L2	Q567V2	206 aa		7.89	□□□□□ -1.15
CAPN1-223	ENST00000533079	C20orf203	Q8NBC4	194 aa		7.89	□□□□□ -1.15
CAPN1-223	ENST00000533079	PYGO1	Q9Y3Y4	419 aa		7.89	□□□□□ -1.15
CAPN1-223	ENST00000533079	IGHV3-64	A0A075B6Q5	118 aa		7.88	□□□□□ -1.15
CAPN1-223	ENST00000533079	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	7.88	□□□□□ -1.15
CAPN1-223	ENST00000533079	PCP4L1	A6NKN8	68 aa		7.88	□□□□□ -1.15
CAPN1-223	ENST00000533079	HSBP1L1	C9JCN9	74 aa		7.88	□□□□□ -1.15
CAPN1-223	ENST00000533079		Q6ZN92	141 aa		7.88	□□□□□ -1.15
CAPN1-223	ENST00000533079	SPACA4	Q8TDM5	124 aa		7.88	□□□□□ -1.15
CAPN1-223	ENST00000533079	MIEN1	Q9BRT3	115 aa		7.88	□□□□□ -1.15
CAPN1-223	ENST00000533079	PRR34	Q9NV39	138 aa		7.88	□□□□□ -1.15
CAPN1-223	ENST00000533079		A0A087WYN8	130 aa		7.87	□□□□□ -1.15
CAPN1-223	ENST00000533079		A0A0J9YXV3	536 aa		7.87	□□□□□ -1.15
CAPN1-223	ENST00000533079	DDT	P30046	118 aa		7.87	□□□□□ -1.15
CAPN1-223	ENST00000533079	SPATA45	Q537H7	98 aa		7.87	□□□□□ -1.15
CAPN1-223	ENST00000533079	PLAC8	Q9NZF1	115 aa		7.87	□□□□□ -1.15
CAPN1-223	ENST00000533079	PAM16	Q9Y3D7	125 aa		7.87	□□□□□ -1.15
CAPN1-223	ENST00000533079	IGLC3	P0DOY3	106 aa		7.86	□□□□□ -1.15
CAPN1-223	ENST00000533079	TMEM97	Q5BJF2	176 aa		7.86	□□□□□ -1.15
CAPN1-223	ENST00000533079	PAPPA-AS1	Q5QFB9	102 aa		7.86	□□□□□ -1.15
CAPN1-223	ENST00000533079	PRO1933	Q9H354	126 aa		7.86	□□□□□ -1.15
CAPN1-223	ENST00000533079	DPM2	O94777	84 aa		7.85	□□□□□ -1.15
CAPN1-223	ENST00000533079	PLN	P26678	52 aa		7.85	□□□□□ -1.15
CAPN1-223	ENST00000533079	COTL1	Q14019	142 aa		7.85	□□□□□ -1.15
CAPN1-223	ENST00000533079	KRTAP26-1	Q6PEX3	210 aa		7.85	□□□□□ -1.15
CAPN1-223	ENST00000533079	REG3G	Q6UW15	175 aa		7.85	□□□□□ -1.15
CAPN1-223	ENST00000533079	DPH3	Q96FX2	82 aa		7.85	□□□□□ -1.15
CAPN1-223	ENST00000533079	CHCHD5	Q9BSY4	110 aa		7.85	□□□□□ -1.15
CAPN1-223	ENST00000533079	TIMM21	Q9BVV7	248 aa		7.85	□□□□□ -1.15
CAPN1-223	ENST00000533079	UQCR10	Q9UDW1	63 aa		7.85	□□□□□ -1.15
CAPN1-223	ENST00000533079	hDV102S1	A0JD36	115 aa		7.84	□□□□□ -1.15
CAPN1-223	ENST00000533079		F8VRH5	84 aa		7.84	□□□□□ -1.15
CAPN1-223	ENST00000533079	IGKC	P01834	107 aa		7.84	□□□□□ -1.15
CAPN1-223	ENST00000533079	PRR3	P79522	188 aa	Known RBP	7.84	□□□□□ -1.15
CAPN1-223	ENST00000533079	SMAGP	Q0VAQ4	97 aa		7.84	□□□□□ -1.15
CAPN1-223	ENST00000533079	PMVK	Q15126	192 aa		7.84	□□□□□ -1.15
CAPN1-223	ENST00000533079	MRPL52	Q86TS9	123 aa	Known RBP	7.84	□□□□□ -1.15
CAPN1-223	ENST00000533079	ATOH7	Q8N100	152 aa		7.84	□□□□□ -1.15
CAPN1-223	ENST00000533079	SPANXA1	Q9NS26	97 aa		7.84	□□□□□ -1.15
CAPN1-223	ENST00000533079	LINC00587	B1AMM8	73 aa		7.83	□□□□□ -1.16
CAPN1-223	ENST00000533079		H0Y8G0	127 aa		7.83	□□□□□ -1.16
CAPN1-223	ENST00000533079		H7C423	109 aa		7.83	□□□□□ -1.16
CAPN1-223	ENST00000533079	MAJIN	Q3KP22	176 aa		7.83	□□□□□ -1.16
CAPN1-223	ENST00000533079	PMCHL2	Q9BQD1	86 aa		7.83	□□□□□ -1.16
CAPN1-223	ENST00000533079	CST9L	Q9H4G1	147 aa		7.83	□□□□□ -1.16
CAPN1-223	ENST00000533079	CHTOP	Q9Y3Y2	248 aa	Known RBP	7.83	□□□□□ -1.16
CAPN1-223	ENST00000533079	CSDC2	Q9Y534	153 aa	Known RBP	7.83	□□□□□ -1.16
CAPN1-223	ENST00000533079	DLEU1	O43261	78 aa		7.82	□□□□□ -1.16
CAPN1-223	ENST00000533079	CHTF8	P0CG12	524 aa		7.82	□□□□□ -1.16
CAPN1-223	ENST00000533079	KRTAP10-8	P60410	259 aa		7.82	□□□□□ -1.16
CAPN1-223	ENST00000533079	RPL39	P62891	51 aa	Known RBP	7.82	□□□□□ -1.16
CAPN1-223	ENST00000533079	MRPS36	P82909	103 aa	Known RBP	7.82	□□□□□ -1.16

Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms