RNA–Protein interactions for RNA: ENST00000515261.1

PDLIM3-211, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 622 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-211ENST00000515261 C6orf48Q9UBA6 75 aa9.35□□□□□ -0.91
PDLIM3-211ENST00000515261 IGHV3OR16-9A0A0B4J2B5 98 aa9.34□□□□□ -0.91
PDLIM3-211ENST00000515261 PPP1R2P9O14990 202 aa9.34□□□□□ -0.91
PDLIM3-211ENST00000515261 SMDT1Q9H4I9 107 aa9.34□□□□□ -0.91
PDLIM3-211ENST00000515261 RIGQ13278 110 aa9.33□□□□□ -0.92
PDLIM3-211ENST00000515261 SLC51BQ86UW2 128 aa9.33□□□□□ -0.92
PDLIM3-211ENST00000515261 CARHSP1Q9Y2V2 147 aaKnown RBP9.33□□□□□ -0.92
PDLIM3-211ENST00000515261 KRTAP7-1Q8IUC3 87 aa9.32□□□□□ -0.92
PDLIM3-211ENST00000515261 TSPAN13O95857 204 aa9.31□□□□□ -0.92
PDLIM3-211ENST00000515261 RPL39P62891 51 aaKnown RBP9.31□□□□□ -0.92
PDLIM3-211ENST00000515261 IFITM10A6NMD0 228 aa9.3□□□□□ -0.92
PDLIM3-211ENST00000515261 LINC01551Q86U37 167 aa9.3□□□□□ -0.92
PDLIM3-211ENST00000515261 SMIM7Q9BQ49 75 aa9.3□□□□□ -0.92
PDLIM3-211ENST00000515261 OSTCQ9NRP0 149 aa9.3□□□□□ -0.92
PDLIM3-211ENST00000515261 TGIF2-C20orf24A0A0A6YYL0 155 aa9.29□□□□□ -0.92
PDLIM3-211ENST00000515261 TCAPO15273 167 aa9.29□□□□□ -0.92
PDLIM3-211ENST00000515261 ZNF861PO60384 105 aa9.29□□□□□ -0.92
PDLIM3-211ENST00000515261 HBBP68871 147 aa9.29□□□□□ -0.92
PDLIM3-211ENST00000515261 MRPL51Q4U2R6 128 aaKnown RBP9.29□□□□□ -0.92
PDLIM3-211ENST00000515261 FAM104AQ969W3 186 aa9.29□□□□□ -0.92
PDLIM3-211ENST00000515261 C20orf78Q9BR46 151 aa9.29□□□□□ -0.92
PDLIM3-211ENST00000515261 SPANXA1Q9NS26 97 aa9.29□□□□□ -0.92
PDLIM3-211ENST00000515261 TRBV30A0A0K0K1B3 111 aa9.28□□□□□ -0.92
PDLIM3-211ENST00000515261 NDUFC2-KCTD14E9PQ53 114 aa9.28□□□□□ -0.92
PDLIM3-211ENST00000515261 MRPS36P82909 103 aaKnown RBP9.28□□□□□ -0.92
PDLIM3-211ENST00000515261 LCE2AQ5TA79 106 aaPredicted RBP9.28□□□□□ -0.92
PDLIM3-211ENST00000515261 LINC00862A6NCI5 91 aa9.27□□□□□ -0.93
PDLIM3-211ENST00000515261 BLOC1S1P78537 153 aa9.27□□□□□ -0.93
PDLIM3-211ENST00000515261 KIAA0087Q14695 138 aa9.27□□□□□ -0.93
PDLIM3-211ENST00000515261 C9orf129Q5T035 196 aaKnown RBP9.27□□□□□ -0.93
PDLIM3-211ENST00000515261 FAM104BQ5XKR9 115 aa9.27□□□□□ -0.93
PDLIM3-211ENST00000515261 PACRGQ96M98 296 aaPredicted RBP9.27□□□□□ -0.93
PDLIM3-211ENST00000515261 FAT4Q6V0I7 4981 aa9.26□□□□□ -0.93
PDLIM3-211ENST00000515261 TRBV24-1A0A075B6N3 115 aa9.26□□□□□ -0.93
PDLIM3-211ENST00000515261 KRTAP9-6A0A140TA67 174 aa9.26□□□□□ -0.93
PDLIM3-211ENST00000515261 ZNF727A8MUV8 499 aa9.26□□□□□ -0.93
PDLIM3-211ENST00000515261 CKS2P33552 79 aa9.26□□□□□ -0.93
PDLIM3-211ENST00000515261 RPL32P62910 135 aaKnown RBP9.26□□□□□ -0.93
PDLIM3-211ENST00000515261 NAT8BQ9UHF3 227 aa9.26□□□□□ -0.93
PDLIM3-211ENST00000515261 V9GYV3 84 aa9.26□□□□□ -0.93
PDLIM3-211ENST00000515261 C2orf82Q6UX34 121 aa9.25□□□□□ -0.93
PDLIM3-211ENST00000515261 SMIM2Q9BVW6 85 aa9.25□□□□□ -0.93
PDLIM3-211ENST00000515261 EIF5A2Q9GZV4 153 aaKnown RBP9.25□□□□□ -0.93
PDLIM3-211ENST00000515261 NUPR1O60356 82 aa9.24□□□□□ -0.93
PDLIM3-211ENST00000515261 TNFRSF6BO95407 300 aa9.24□□□□□ -0.93
PDLIM3-211ENST00000515261 TCTE3Q8IZS6 198 aa9.23□□□□□ -0.93
PDLIM3-211ENST00000515261 IFI27P40305 119 aaPredicted RBP9.22□□□□□ -0.93
PDLIM3-211ENST00000515261 LINC00242Q5T6M2 205 aa9.22□□□□□ -0.93
PDLIM3-211ENST00000515261 ALKAL2Q6UX46 152 aa9.22□□□□□ -0.93
PDLIM3-211ENST00000515261 TYMSOSQ8TAI1 123 aa9.22□□□□□ -0.93
PDLIM3-211ENST00000515261 A0A087X002 238 aa9.21□□□□□ -0.94
PDLIM3-211ENST00000515261 FAM74A3Q4VXF1 159 aa9.21□□□□□ -0.94
PDLIM3-211ENST00000515261 LBHQ53QV2 105 aaPredicted RBP9.21□□□□□ -0.94
PDLIM3-211ENST00000515261 CTDSP1Q9GZU7 261 aa9.21□□□□□ -0.94
PDLIM3-211ENST00000515261 C22orf24Q9Y442 160 aa9.21□□□□□ -0.94
PDLIM3-211ENST00000515261 D6R8Y8 96 aa9.2□□□□□ -0.94
PDLIM3-211ENST00000515261 CRYGAP11844 174 aa9.2□□□□□ -0.94
PDLIM3-211ENST00000515261 A0A1B0GW15 77 aa9.19□□□□□ -0.94
PDLIM3-211ENST00000515261 NPYP01303 97 aa9.19□□□□□ -0.94
PDLIM3-211ENST00000515261 PRSS2P07478 247 aa9.19□□□□□ -0.94
PDLIM3-211ENST00000515261 RAB5AP20339 215 aa9.19□□□□□ -0.94
PDLIM3-211ENST00000515261 RPL28P46779 137 aaKnown RBP9.19□□□□□ -0.94
PDLIM3-211ENST00000515261 LINC00469Q8N7U9 141 aa9.19□□□□□ -0.94
PDLIM3-211ENST00000515261 IGLV4-3A0A075B6K6 122 aa9.18□□□□□ -0.94
PDLIM3-211ENST00000515261 SMIM27A0A1W2PRY6 76 aa9.18□□□□□ -0.94
PDLIM3-211ENST00000515261 SRP19P09132 144 aaKnown RBP9.18□□□□□ -0.94
PDLIM3-211ENST00000515261 CKS1BP61024 79 aa9.18□□□□□ -0.94
PDLIM3-211ENST00000515261 LINC01561Q8N1V8 128 aa9.18□□□□□ -0.94
PDLIM3-211ENST00000515261 TMEM141Q96I45 108 aa9.18□□□□□ -0.94
PDLIM3-211ENST00000515261 XAGE1AQ9HD64 81 aa9.18□□□□□ -0.94
PDLIM3-211ENST00000515261 TOMM7Q9P0U1 55 aa9.18□□□□□ -0.94
PDLIM3-211ENST00000515261 PYGO1Q9Y3Y4 419 aa9.18□□□□□ -0.94
PDLIM3-211ENST00000515261 F8W036 122 aa9.17□□□□□ -0.94
PDLIM3-211ENST00000515261 TEX43Q6ZNM6 134 aa9.17□□□□□ -0.94
PDLIM3-211ENST00000515261 BCE1O60756 84 aa9.16□□□□□ -0.94
PDLIM3-211ENST00000515261 PPBPP02775 128 aa9.16□□□□□ -0.94
PDLIM3-211ENST00000515261 S100A8P05109 93 aa9.16□□□□□ -0.94
PDLIM3-211ENST00000515261 RPL23P62829 140 aaKnown RBP9.16□□□□□ -0.94
PDLIM3-211ENST00000515261 ADIRFQ15847 76 aa9.16□□□□□ -0.94
PDLIM3-211ENST00000515261 C6orf226Q5I0X4 101 aa9.16□□□□□ -0.94
PDLIM3-211ENST00000515261 C2orf88Q9BSF0 95 aa9.16□□□□□ -0.94
PDLIM3-211ENST00000515261 MRPL54Q6P161 138 aaKnown RBP9.15□□□□□ -0.94
PDLIM3-211ENST00000515261 Q6ZN92 141 aa9.15□□□□□ -0.94
PDLIM3-211ENST00000515261 MRPL55Q7Z7F7 128 aaKnown RBP9.15□□□□□ -0.94
PDLIM3-211ENST00000515261 RETNLBQ9BQ08 111 aa9.15□□□□□ -0.94
PDLIM3-211ENST00000515261 CDIP1Q9H305 208 aa9.15□□□□□ -0.94
PDLIM3-211ENST00000515261 TP73-AS1Q9UF72 201 aa9.14□□□□□ -0.95
PDLIM3-211ENST00000515261 MUC17Q685J3 4493 aa9.13□□□□□ -0.95
PDLIM3-211ENST00000515261 Q8IZM0 81 aa9.13□□□□□ -0.95
PDLIM3-211ENST00000515261 ORMDL3Q8N138 153 aa9.13□□□□□ -0.95
PDLIM3-211ENST00000515261 ALKBH7Q9BT30 221 aaPredicted RBP9.13□□□□□ -0.95
PDLIM3-211ENST00000515261 ANAPC11Q9NYG5 84 aa9.13□□□□□ -0.95
PDLIM3-211ENST00000515261 ZC2HC1BQ5TFG8 222 aa9.11□□□□□ -0.95
PDLIM3-211ENST00000515261 TMEM136Q6ZRR5 245 aa9.11□□□□□ -0.95
PDLIM3-211ENST00000515261 PRELID3AQ96N28 172 aa9.11□□□□□ -0.95
PDLIM3-211ENST00000515261 VCX2Q9H322 139 aa9.11□□□□□ -0.95
PDLIM3-211ENST00000515261 NAT8Q9UHE5 227 aa9.11□□□□□ -0.95
PDLIM3-211ENST00000515261 A0A1B0GXF2 115 aa9.1□□□□□ -0.95
PDLIM3-211ENST00000515261 RPL37AP8A6NKH3 93 aa9.1□□□□□ -0.95
PDLIM3-211ENST00000515261 TPRXLQ17RH7 258 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms