RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 DCHS2Q6V1P9 2916 aa8.58□□□□□ -1.04
LIMCH1-213ENST00000511496 NDUFC1O43677 76 aa8.58□□□□□ -1.04
LIMCH1-213ENST00000511496 C11orf68Q9H3H3 251 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-213ENST00000511496 SPTAN1Q13813 2472 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-213ENST00000511496 AKAP13Q12802 2813 aa8.58□□□□□ -1.04
LIMCH1-213ENST00000511496 IGLV5-45A0A087WSX0 123 aa8.58□□□□□ -1.04
LIMCH1-213ENST00000511496 Q8N3U1 123 aa8.58□□□□□ -1.04
LIMCH1-213ENST00000511496 Q8N6K4 173 aa8.58□□□□□ -1.04
LIMCH1-213ENST00000511496 E7EQL1 145 aa8.57□□□□□ -1.04
LIMCH1-213ENST00000511496 LINC01547P58512 204 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-213ENST00000511496 CCL18P55774 89 aa8.57□□□□□ -1.04
LIMCH1-213ENST00000511496 CFHR3Q02985 330 aa8.57□□□□□ -1.04
LIMCH1-213ENST00000511496 ESRGQ1W209 222 aa8.57□□□□□ -1.04
LIMCH1-213ENST00000511496 TECTAO75443 2155 aa8.57□□□□□ -1.04
LIMCH1-213ENST00000511496 IGKV3OR2-268A0A0C4DH90 116 aa8.56□□□□□ -1.04
LIMCH1-213ENST00000511496 PLAC8L1A1L4L8 177 aa8.56□□□□□ -1.04
LIMCH1-213ENST00000511496 PIEZO2Q9H5I5 2752 aa8.56□□□□□ -1.04
LIMCH1-213ENST00000511496 ATP5EP56381 51 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-213ENST00000511496 TMEM89A2RUT3 159 aa8.55□□□□□ -1.04
LIMCH1-213ENST00000511496 ODF3BA8MYP8 253 aa8.55□□□□□ -1.04
LIMCH1-213ENST00000511496 M0R2N4 97 aa8.55□□□□□ -1.04
LIMCH1-213ENST00000511496 C19orf54Q5BKX5 351 aa8.54□□□□□ -1.04
LIMCH1-213ENST00000511496 TMEM254Q8TBM7 123 aa8.54□□□□□ -1.04
LIMCH1-213ENST00000511496 CD164Q04900 197 aa8.54□□□□□ -1.04
LIMCH1-213ENST00000511496 PRR15Q8IV56 129 aa8.54□□□□□ -1.04
LIMCH1-213ENST00000511496 COL12A1Q99715 3063 aa8.53□□□□□ -1.04
LIMCH1-213ENST00000511496 PSPHP1O15172 72 aa8.53□□□□□ -1.04
LIMCH1-213ENST00000511496 TMEM256-PLSCR3K7ERE1 68 aa8.53□□□□□ -1.04
LIMCH1-213ENST00000511496 BCE1O60756 84 aa8.53□□□□□ -1.04
LIMCH1-213ENST00000511496 FUSP35637 526 aaKnown RBP eCLIP8.52□□□□□ -1.04
LIMCH1-213ENST00000511496 NREPQ16612 68 aa8.52□□□□□ -1.05
LIMCH1-213ENST00000511496 NDUFA4O00483 81 aa8.52□□□□□ -1.05
LIMCH1-213ENST00000511496 Q6ZVQ6 151 aa8.52□□□□□ -1.05
LIMCH1-213ENST00000511496 LAMTOR3Q9UHA4 124 aa8.52□□□□□ -1.05
LIMCH1-213ENST00000511496 TRBV10-1A0A0K0K1A3 114 aa8.51□□□□□ -1.05
LIMCH1-213ENST00000511496 Q6ZRU5 148 aa8.51□□□□□ -1.05
LIMCH1-213ENST00000511496 TRBV7-4A0A0J9YYF1 115 aa8.51□□□□□ -1.05
LIMCH1-213ENST00000511496 C19orf84I3L1E1 186 aa8.51□□□□□ -1.05
LIMCH1-213ENST00000511496 MRPL55Q7Z7F7 128 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-213ENST00000511496 ZNF843Q8N446 348 aa8.51□□□□□ -1.05
LIMCH1-213ENST00000511496 BBC3Q96PG8 261 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-213ENST00000511496 MUC3AQ02505 3323 aa8.5□□□□□ -1.05
LIMCH1-213ENST00000511496 C6orf223Q8N319 242 aa8.5□□□□□ -1.05
LIMCH1-213ENST00000511496 COX7B2Q8TF08 81 aa8.5□□□□□ -1.05
LIMCH1-213ENST00000511496 PRR3P79522 188 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-213ENST00000511496 Q8N814 137 aa8.5□□□□□ -1.05
LIMCH1-213ENST00000511496 IBA57-AS1B1ANH7 110 aa8.49□□□□□ -1.05
LIMCH1-213ENST00000511496 K7EQG2 157 aa8.49□□□□□ -1.05
LIMCH1-213ENST00000511496 DEFB109BQ30KR1 87 aa8.49□□□□□ -1.05
LIMCH1-213ENST00000511496 NBASA2RRP1 2371 aa8.48□□□□□ -1.05
LIMCH1-213ENST00000511496 PRB2P02812 416 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-213ENST00000511496 BPY2O14599 106 aa8.47□□□□□ -1.05
LIMCH1-213ENST00000511496 PRYO14603 147 aa8.47□□□□□ -1.05
LIMCH1-213ENST00000511496 GNLYP22749 145 aa8.47□□□□□ -1.05
LIMCH1-213ENST00000511496 Q6ZQT0 140 aa8.46□□□□□ -1.06
LIMCH1-213ENST00000511496 DYNLRB2Q8TF09 96 aa8.46□□□□□ -1.06
LIMCH1-213ENST00000511496 CUBNO60494 3623 aa8.46□□□□□ -1.06
LIMCH1-213ENST00000511496 MINOS1-NBL1R4GNA1 71 aa8.45□□□□□ -1.06
LIMCH1-213ENST00000511496 CUL9Q8IWT3 2517 aa8.45□□□□□ -1.06
LIMCH1-213ENST00000511496 Q8N9L7 120 aa8.45□□□□□ -1.06
LIMCH1-213ENST00000511496 HIGD2AQ9BW72 106 aa8.45□□□□□ -1.06
LIMCH1-213ENST00000511496 EP300Q09472 2414 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-213ENST00000511496 ANKHD1Q8IWZ3 2542 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-213ENST00000511496 TRBV6-4A0A1B0GX49 114 aa8.45□□□□□ -1.06
LIMCH1-213ENST00000511496 A8MU10 97 aa8.44□□□□□ -1.06
LIMCH1-213ENST00000511496 NTM-AS1Q6ZSK4 140 aa8.44□□□□□ -1.06
LIMCH1-213ENST00000511496 ACACAQ13085 2346 aa8.44□□□□□ -1.06
LIMCH1-213ENST00000511496 Q6ZTC4 211 aa8.44□□□□□ -1.06
LIMCH1-213ENST00000511496 ZNF561-AS1K7EIQ3 104 aa8.43□□□□□ -1.06
LIMCH1-213ENST00000511496 Q6ZRP5 223 aa8.43□□□□□ -1.06
LIMCH1-213ENST00000511496 A0A096LNT2 108 aa8.42□□□□□ -1.06
LIMCH1-213ENST00000511496 C1orf158Q8N1D5 194 aa8.42□□□□□ -1.06
LIMCH1-213ENST00000511496 C5orf56Q8N8D9 126 aa8.42□□□□□ -1.06
LIMCH1-213ENST00000511496 CDC42SE2Q9NRR3 84 aa8.42□□□□□ -1.06
LIMCH1-213ENST00000511496 CELSR1Q9NYQ6 3014 aa8.42□□□□□ -1.06
LIMCH1-213ENST00000511496 A8MTW9 85 aa8.42□□□□□ -1.06
LIMCH1-213ENST00000511496 ZFP36P26651 326 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-213ENST00000511496 IGHV3-53P01767 116 aa8.41□□□□□ -1.06
LIMCH1-213ENST00000511496 KLK9Q2XQG4 91 aa8.41□□□□□ -1.06
LIMCH1-213ENST00000511496 UBE2L6O14933 153 aa8.41□□□□□ -1.06
LIMCH1-213ENST00000511496 CXCL6P80162 114 aa8.41□□□□□ -1.06
LIMCH1-213ENST00000511496 LINC01560Q8TB33 94 aa8.41□□□□□ -1.06
LIMCH1-213ENST00000511496 RBM12B-AS1Q9P1G2 102 aa8.41□□□□□ -1.06
LIMCH1-213ENST00000511496 LY6EQ16553 131 aa8.4□□□□□ -1.06
LIMCH1-213ENST00000511496 C6orf99Q4VX62 202 aa8.4□□□□□ -1.06
LIMCH1-213ENST00000511496 K7EQD1 137 aa8.4□□□□□ -1.07
LIMCH1-213ENST00000511496 LINC01356Q8N9X3 169 aa8.4□□□□□ -1.07
LIMCH1-213ENST00000511496 LINC00167Q96N53 147 aa8.4□□□□□ -1.07
LIMCH1-213ENST00000511496 ARRDC1-AS1Q9H2J1 176 aa8.4□□□□□ -1.07
LIMCH1-213ENST00000511496 NANOS2P60321 138 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-213ENST00000511496 PRR4Q16378 134 aa8.39□□□□□ -1.07
LIMCH1-213ENST00000511496 C4orf48Q5BLP8 95 aa8.39□□□□□ -1.07
LIMCH1-213ENST00000511496 Q8NA96 180 aa8.39□□□□□ -1.07
LIMCH1-213ENST00000511496 RIF1Q5UIP0 2472 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-213ENST00000511496 GRNP28799 593 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-213ENST00000511496 SPTSSBQ8NFR3 76 aa8.38□□□□□ -1.07
LIMCH1-213ENST00000511496 hDV103S1A0JD37 113 aa8.37□□□□□ -1.07
LIMCH1-213ENST00000511496 MAP1AP78559 2803 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-213ENST00000511496 TRAV22A0A0B4J277 110 aa8.37□□□□□ -1.07
LIMCH1-213ENST00000511496 IGFL3Q6UXB1 125 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms