RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 MT-ND4LP03901 98 aa11.19□□□□□ -0.62
TPM3-220ENST00000509601 PTTG1IPP53801 180 aa11.19□□□□□ -0.62
TPM3-220ENST00000509601 LOC107984640A0A0U1RRK4 108 aa11.18□□□□□ -0.62
TPM3-220ENST00000509601 GAGE2BQ13066 116 aa11.18□□□□□ -0.62
TPM3-220ENST00000509601 CAMK2N2Q96S95 79 aa11.18□□□□□ -0.62
TPM3-220ENST00000509601 A0A1W2PNN7 141 aa11.17□□□□□ -0.62
TPM3-220ENST00000509601 APOMO95445 188 aa11.17□□□□□ -0.62
TPM3-220ENST00000509601 RAB5AP20339 215 aa11.17□□□□□ -0.62
TPM3-220ENST00000509601 PRR3P79522 188 aaKnown RBP11.17□□□□□ -0.62
TPM3-220ENST00000509601 PYGO1Q9Y3Y4 419 aa11.17□□□□□ -0.62
TPM3-220ENST00000509601 LOC389332A0A1B0GUA5 103 aa11.16□□□□□ -0.62
TPM3-220ENST00000509601 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.16□□□□□ -0.62
TPM3-220ENST00000509601 CLLU1Q5K131 121 aa11.16□□□□□ -0.62
TPM3-220ENST00000509601 A0A0J9YXV3 536 aa11.15□□□□□ -0.62
TPM3-220ENST00000509601 SPAG11BQ08648 103 aa11.15□□□□□ -0.62
TPM3-220ENST00000509601 RNF151Q2KHN1 245 aa11.15□□□□□ -0.62
TPM3-220ENST00000509601 OR10D4PQ8NGN7 298 aa11.15□□□□□ -0.62
TPM3-220ENST00000509601 LAMTOR2Q9Y2Q5 125 aa11.15□□□□□ -0.62
TPM3-220ENST00000509601 IFITM10A6NMD0 228 aa11.14□□□□□ -0.63
TPM3-220ENST00000509601 Q8N8P6 123 aa11.14□□□□□ -0.63
TPM3-220ENST00000509601 IGLV4-3A0A075B6K6 122 aa11.13□□□□□ -0.63
TPM3-220ENST00000509601 IFI27P40305 119 aaPredicted RBP11.13□□□□□ -0.63
TPM3-220ENST00000509601 ORAOV1Q8WV07 137 aa11.13□□□□□ -0.63
TPM3-220ENST00000509601 ADCYAP1P18509 176 aa11.12□□□□□ -0.63
TPM3-220ENST00000509601 IFITM2Q01629 132 aa11.12□□□□□ -0.63
TPM3-220ENST00000509601 SRSF9Q13242 221 aaKnown RBP eCLIP11.12□□□□□ -0.63
TPM3-220ENST00000509601 LINC00242Q5T6M2 205 aa11.12□□□□□ -0.63
TPM3-220ENST00000509601 C10orf25Q5T742 122 aa11.12□□□□□ -0.63
TPM3-220ENST00000509601 MAP1LC3AQ9H492 121 aa11.12□□□□□ -0.63
TPM3-220ENST00000509601 MRPL35Q9NZE8 188 aaKnown RBP11.12□□□□□ -0.63
TPM3-220ENST00000509601 F8WDY8 70 aa11.11□□□□□ -0.63
TPM3-220ENST00000509601 KIAA0087Q14695 138 aa11.11□□□□□ -0.63
TPM3-220ENST00000509601 A0A087WZ39 114 aa11.1□□□□□ -0.63
TPM3-220ENST00000509601 C9orf116Q5BN46 136 aaPredicted RBP11.1□□□□□ -0.63
TPM3-220ENST00000509601 ZC2HC1BQ5TFG8 222 aa11.1□□□□□ -0.63
TPM3-220ENST00000509601 UNQ6190/PRO20217Q6UXQ8 127 aa11.1□□□□□ -0.63
TPM3-220ENST00000509601 TMEM141Q96I45 108 aa11.1□□□□□ -0.63
TPM3-220ENST00000509601 IMMP2LQ96T52 175 aa11.1□□□□□ -0.63
TPM3-220ENST00000509601 RPL18AQ02543 176 aaKnown RBP11.09□□□□□ -0.63
TPM3-220ENST00000509601 SPINK6Q6UWN8 80 aa11.09□□□□□ -0.63
TPM3-220ENST00000509601 C2orf66Q6UXQ4 117 aa11.09□□□□□ -0.63
TPM3-220ENST00000509601 Q6ZRP5 223 aa11.09□□□□□ -0.63
TPM3-220ENST00000509601 LINC01600Q96MT4 127 aa11.09□□□□□ -0.63
TPM3-220ENST00000509601 TMEM218A2RU14 115 aa11.08□□□□□ -0.64
TPM3-220ENST00000509601 NDUFA1O15239 70 aa11.08□□□□□ -0.64
TPM3-220ENST00000509601 UBE2D1P51668 147 aa11.08□□□□□ -0.64
TPM3-220ENST00000509601 LINC00173Q6ZV60 143 aa11.08□□□□□ -0.64
TPM3-220ENST00000509601 AMELXQ99217 191 aa11.08□□□□□ -0.64
TPM3-220ENST00000509601 C6orf48Q9UBA6 75 aa11.08□□□□□ -0.64
TPM3-220ENST00000509601 PLA2G2DQ9UNK4 145 aa11.08□□□□□ -0.64
TPM3-220ENST00000509601 TGIF2-C20orf24A0A0A6YYL0 155 aa11.07□□□□□ -0.64
TPM3-220ENST00000509601 IGIPA6NJ69 53 aa11.07□□□□□ -0.64
TPM3-220ENST00000509601 TLX1NBP0CAT3 122 aa11.07□□□□□ -0.64
TPM3-220ENST00000509601 UQCC3Q6UW78 93 aa11.07□□□□□ -0.64
TPM3-220ENST00000509601 TEX43Q6ZNM6 134 aa11.07□□□□□ -0.64
TPM3-220ENST00000509601 CTDSP1Q9GZU7 261 aa11.07□□□□□ -0.64
TPM3-220ENST00000509601 CYSLTR1Q9Y271 337 aa11.07□□□□□ -0.64
TPM3-220ENST00000509601 K7EMI3 77 aa11.06□□□□□ -0.64
TPM3-220ENST00000509601 ORMDL2Q53FV1 153 aa11.06□□□□□ -0.64
TPM3-220ENST00000509601 KIAA1644Q3SXP7 199 aa11.05□□□□□ -0.64
TPM3-220ENST00000509601 PHF5AQ7RTV0 110 aaKnown RBP11.05□□□□□ -0.64
TPM3-220ENST00000509601 VCX2Q9H322 139 aa11.05□□□□□ -0.64
TPM3-220ENST00000509601 KRTAP10-8P60410 259 aa11.04□□□□□ -0.64
TPM3-220ENST00000509601 LINC01561Q8N1V8 128 aa11.04□□□□□ -0.64
TPM3-220ENST00000509601 NXT2Q9NPJ8 142 aaKnown RBP11.04□□□□□ -0.64
TPM3-220ENST00000509601 PSORS1C2Q9UIG4 136 aa11.04□□□□□ -0.64
TPM3-220ENST00000509601 FAM168BA1KXE4 195 aa11.03□□□□□ -0.64
TPM3-220ENST00000509601 NPSP0C0P6 89 aa11.03□□□□□ -0.64
TPM3-220ENST00000509601 C2orf82Q6UX34 121 aa11.03□□□□□ -0.64
TPM3-220ENST00000509601 FAM19A3Q7Z5A8 133 aa11.03□□□□□ -0.64
TPM3-220ENST00000509601 KRTAP7-1Q8IUC3 87 aa11.02□□□□□ -0.65
TPM3-220ENST00000509601 C2orf88Q9BSF0 95 aa11.02□□□□□ -0.65
TPM3-220ENST00000509601 TRAV9-1A0A075B6T8 112 aa11.01□□□□□ -0.65
TPM3-220ENST00000509601 LRP2P98164 4655 aa11.01□□□□□ -0.65
TPM3-220ENST00000509601 Q6ZN92 141 aa11.01□□□□□ -0.65
TPM3-220ENST00000509601 KRTAP11-1Q8IUC1 163 aa11.01□□□□□ -0.65
TPM3-220ENST00000509601 SEC11CQ9BY50 192 aa11.01□□□□□ -0.65
TPM3-220ENST00000509601 ODF1Q14990 250 aa11□□□□□ -0.65
TPM3-220ENST00000509601 GAGE2EQ4V326 116 aa11□□□□□ -0.65
TPM3-220ENST00000509601 TOMM6Q96B49 74 aa11□□□□□ -0.65
TPM3-220ENST00000509601 GAGE2DQ9UEU5 116 aa11□□□□□ -0.65
TPM3-220ENST00000509601 TRBV30A0A0K0K1B3 111 aa10.99□□□□□ -0.65
TPM3-220ENST00000509601 REG3GQ6UW15 175 aa10.99□□□□□ -0.65
TPM3-220ENST00000509601 MT-ND6P03923 174 aa10.98□□□□□ -0.65
TPM3-220ENST00000509601 TIMM17AQ99595 171 aa10.98□□□□□ -0.65
TPM3-220ENST00000509601 GNB1LQ9BYB4 327 aa10.98□□□□□ -0.65
TPM3-220ENST00000509601 G0S2P27469 103 aa10.97□□□□□ -0.65
TPM3-220ENST00000509601 C1orf137Q5JT78 98 aa10.97□□□□□ -0.65
TPM3-220ENST00000509601 C10orf91Q5T1B1 145 aa10.97□□□□□ -0.65
TPM3-220ENST00000509601 ALKBH7Q9BT30 221 aaPredicted RBP10.97□□□□□ -0.65
TPM3-220ENST00000509601 LINC01546A6NGU7 62 aa10.96□□□□□ -0.65
TPM3-220ENST00000509601 NDUFC2-KCTD14E9PQ53 114 aa10.96□□□□□ -0.65
TPM3-220ENST00000509601 C9orf129Q5T035 196 aaKnown RBP10.96□□□□□ -0.65
TPM3-220ENST00000509601 CDKN2A-AS1Q9UH64 79 aa10.96□□□□□ -0.65
TPM3-220ENST00000509601 PAPPA-AS1Q5QFB9 102 aa10.95□□□□□ -0.66
TPM3-220ENST00000509601 ERASQ7Z444 233 aa10.95□□□□□ -0.66
TPM3-220ENST00000509601 FAM19A5Q7Z5A7 132 aaPredicted RBP10.95□□□□□ -0.66
TPM3-220ENST00000509601 COMMD7Q86VX2 200 aa10.95□□□□□ -0.66
TPM3-220ENST00000509601 PACRGQ96M98 296 aaPredicted RBP10.95□□□□□ -0.66
TPM3-220ENST00000509601 S100PP25815 95 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms