RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 TIMM17AQ99595 171 aa7.47□□□□□ -1.21
LIMCH1-210ENST00000509454 NPSP0C0P6 89 aa7.46□□□□□ -1.22
LIMCH1-210ENST00000509454 ZNF561-AS1K7EIQ3 104 aa7.45□□□□□ -1.22
LIMCH1-210ENST00000509454 APOMO95445 188 aa7.45□□□□□ -1.22
LIMCH1-210ENST00000509454 HBDP02042 147 aa7.45□□□□□ -1.22
LIMCH1-210ENST00000509454 NDUFA6P56556 154 aa7.45□□□□□ -1.22
LIMCH1-210ENST00000509454 URB1-AS1Q96HZ7 61 aa7.45□□□□□ -1.22
LIMCH1-210ENST00000509454 DNAH11Q96DT5 4516 aa7.45□□□□□ -1.22
LIMCH1-210ENST00000509454 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-210ENST00000509454 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-210ENST00000509454 ATP6V1G1O75348 118 aa7.44□□□□□ -1.22
LIMCH1-210ENST00000509454 S100A1P23297 94 aa7.44□□□□□ -1.22
LIMCH1-210ENST00000509454 UBE2D1P51668 147 aa7.44□□□□□ -1.22
LIMCH1-210ENST00000509454 CHCHD1Q96BP2 118 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-210ENST00000509454 LINC00526Q96FQ7 95 aa7.44□□□□□ -1.22
LIMCH1-210ENST00000509454 AMELXQ99217 191 aa7.44□□□□□ -1.22
LIMCH1-210ENST00000509454 PKHD1P08F94 4074 aa7.43□□□□□ -1.22
LIMCH1-210ENST00000509454 HSBP1O75506 76 aa7.43□□□□□ -1.22
LIMCH1-210ENST00000509454 LINC00242Q5T6M2 205 aa7.43□□□□□ -1.22
LIMCH1-210ENST00000509454 LINC00173Q6ZV60 143 aa7.43□□□□□ -1.22
LIMCH1-210ENST00000509454 GEMIN7Q9H840 131 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-210ENST00000509454 GVQW2A0A096LPI5 108 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-210ENST00000509454 COX6A2Q02221 97 aa7.42□□□□□ -1.22
LIMCH1-210ENST00000509454 ORAOV1Q8WV07 137 aa7.42□□□□□ -1.22
LIMCH1-210ENST00000509454 CNBPP62633 177 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-210ENST00000509454 SEC11AP67812 179 aa7.42□□□□□ -1.22
LIMCH1-210ENST00000509454 HAMPP81172 84 aa7.42□□□□□ -1.22
LIMCH1-210ENST00000509454 SPAG11BQ08648 103 aa7.42□□□□□ -1.22
LIMCH1-210ENST00000509454 PMVKQ15126 192 aa7.42□□□□□ -1.22
LIMCH1-210ENST00000509454 DYNC1H1Q14204 4646 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-210ENST00000509454 IGLV4-69A0A075B6H9 119 aa7.41□□□□□ -1.22
LIMCH1-210ENST00000509454 IGHV3-64A0A075B6Q5 118 aa7.41□□□□□ -1.22
LIMCH1-210ENST00000509454 A0A096LNJ9 63 aa7.41□□□□□ -1.22
LIMCH1-210ENST00000509454 IGHV3OR16-9A0A0B4J2B5 98 aa7.41□□□□□ -1.22
LIMCH1-210ENST00000509454 A0A0J9YXV3 536 aa7.41□□□□□ -1.22
LIMCH1-210ENST00000509454 CDK2AP2O75956 126 aa7.41□□□□□ -1.22
LIMCH1-210ENST00000509454 ATP5LO75964 103 aa7.41□□□□□ -1.22
LIMCH1-210ENST00000509454 CST9LQ9H4G1 147 aa7.41□□□□□ -1.22
LIMCH1-210ENST00000509454 SERF1AO75920 110 aa7.4□□□□□ -1.22
LIMCH1-210ENST00000509454 SLPIP03973 132 aa7.4□□□□□ -1.22
LIMCH1-210ENST00000509454 HERVK_113P63121 156 aa7.4□□□□□ -1.22
LIMCH1-210ENST00000509454 FAM19A2Q8N3H0 131 aa7.4□□□□□ -1.22
LIMCH1-210ENST00000509454 LINC00469Q8N7U9 141 aa7.4□□□□□ -1.22
LIMCH1-210ENST00000509454 C9orf163Q8N9P6 203 aa7.4□□□□□ -1.22
LIMCH1-210ENST00000509454 CARD19Q96LW7 228 aa7.4□□□□□ -1.22
LIMCH1-210ENST00000509454 PACRGQ96M98 296 aaPredicted RBP7.4□□□□□ -1.22
LIMCH1-210ENST00000509454 CAMK2N2Q96S95 79 aa7.4□□□□□ -1.22
LIMCH1-210ENST00000509454 TMA7Q9Y2S6 64 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-210ENST00000509454 A0A087WZ39 114 aa7.39□□□□□ -1.23
LIMCH1-210ENST00000509454 SYCNQ0VAF6 134 aa7.39□□□□□ -1.23
LIMCH1-210ENST00000509454 PDZD11Q5EBL8 140 aa7.39□□□□□ -1.23
LIMCH1-210ENST00000509454 OR10D4PQ8NGN7 298 aa7.39□□□□□ -1.23
LIMCH1-210ENST00000509454 DPH3Q96FX2 82 aa7.39□□□□□ -1.23
LIMCH1-210ENST00000509454 FAM30AQ9NZY2 134 aa7.39□□□□□ -1.23
LIMCH1-210ENST00000509454 TOMM7Q9P0U1 55 aa7.38□□□□□ -1.23
LIMCH1-210ENST00000509454 TINCRA0A1B0GVN0 87 aa7.37□□□□□ -1.23
LIMCH1-210ENST00000509454 PRSS2P07478 247 aa7.37□□□□□ -1.23
LIMCH1-210ENST00000509454 IFI27L1Q96BM0 104 aa7.37□□□□□ -1.23
LIMCH1-210ENST00000509454 CDKN2A-AS1Q9UH64 79 aa7.37□□□□□ -1.23
LIMCH1-210ENST00000509454 DNAH5Q8TE73 4624 aa7.37□□□□□ -1.23
LIMCH1-210ENST00000509454 H0Y8G0 127 aa7.37□□□□□ -1.23
LIMCH1-210ENST00000509454 Q6ZRU5 148 aa7.37□□□□□ -1.23
LIMCH1-210ENST00000509454 FAM19A3Q7Z5A8 133 aa7.37□□□□□ -1.23
LIMCH1-210ENST00000509454 NDUFA1O15239 70 aa7.36□□□□□ -1.23
LIMCH1-210ENST00000509454 HIST1H2BKO60814 126 aa7.36□□□□□ -1.23
LIMCH1-210ENST00000509454 HIST1H2BJP06899 126 aa7.36□□□□□ -1.23
LIMCH1-210ENST00000509454 FABP4P15090 132 aa7.36□□□□□ -1.23
LIMCH1-210ENST00000509454 HIST1H2BOP23527 126 aa7.36□□□□□ -1.23
LIMCH1-210ENST00000509454 HIST1H2BBP33778 126 aa7.36□□□□□ -1.23
LIMCH1-210ENST00000509454 XGP55808 180 aa7.36□□□□□ -1.23
LIMCH1-210ENST00000509454 HIST1H2BDP58876 126 aa7.36□□□□□ -1.23
LIMCH1-210ENST00000509454 HIST1H2BCP62807 126 aa7.36□□□□□ -1.23
LIMCH1-210ENST00000509454 HIST2H2BEQ16778 126 aa7.36□□□□□ -1.23
LIMCH1-210ENST00000509454 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-210ENST00000509454 HIST1H2BHQ93079 126 aa7.36□□□□□ -1.23
LIMCH1-210ENST00000509454 C2orf48Q96LS8 159 aa7.36□□□□□ -1.23
LIMCH1-210ENST00000509454 HIST1H2BNQ99877 126 aa7.36□□□□□ -1.23
LIMCH1-210ENST00000509454 HIST1H2BMQ99879 126 aa7.36□□□□□ -1.23
LIMCH1-210ENST00000509454 CHAC1Q9BUX1 264 aa7.36□□□□□ -1.23
LIMCH1-210ENST00000509454 IGKV2-24A0A0C4DH68 120 aa7.35□□□□□ -1.23
LIMCH1-210ENST00000509454 H3BRM9 83 aa7.35□□□□□ -1.23
LIMCH1-210ENST00000509454 NUPR1O60356 82 aa7.35□□□□□ -1.23
LIMCH1-210ENST00000509454 LEPROTL1O95214 131 aa7.35□□□□□ -1.23
LIMCH1-210ENST00000509454 LINC00310P59036 64 aa7.35□□□□□ -1.23
LIMCH1-210ENST00000509454 SDIM1Q6ZPB5 146 aa7.35□□□□□ -1.23
LIMCH1-210ENST00000509454 LINC01561Q8N1V8 128 aa7.35□□□□□ -1.23
LIMCH1-210ENST00000509454 PKIGQ9Y2B9 76 aa7.35□□□□□ -1.23
LIMCH1-210ENST00000509454 CHTOPQ9Y3Y2 248 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-210ENST00000509454 LRP1BQ9NZR2 4599 aa7.35□□□□□ -1.23
LIMCH1-210ENST00000509454 SMR3BP02814 79 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-210ENST00000509454 SPINK8P0C7L1 97 aa7.34□□□□□ -1.23
LIMCH1-210ENST00000509454 CHTF8P0CG12 524 aa7.34□□□□□ -1.23
LIMCH1-210ENST00000509454 CKS1BP61024 79 aa7.34□□□□□ -1.23
LIMCH1-210ENST00000509454 C6orf226Q5I0X4 101 aa7.34□□□□□ -1.23
LIMCH1-210ENST00000509454 HSPB8Q9UJY1 196 aa7.34□□□□□ -1.23
LIMCH1-210ENST00000509454 KIAA1109Q2LD37 5005 aa7.34□□□□□ -1.23
LIMCH1-210ENST00000509454 IGLC3P0DOY3 106 aa7.33□□□□□ -1.24
LIMCH1-210ENST00000509454 MAJINQ3KP22 176 aa7.33□□□□□ -1.24
LIMCH1-210ENST00000509454 UNQ6190/PRO20217Q6UXQ8 127 aa7.33□□□□□ -1.24
LIMCH1-210ENST00000509454 Q6ZSA8 131 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms