RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 SPRR4Q96PI1 79 aa-0.81□□□□□ -2.54
SMC4-223ENST00000493695 LINC00474Q9P2X8 69 aa-0.81□□□□□ -2.54
SMC4-223ENST00000493695 GAPVD1Q14C86 1478 aa-0.81□□□□□ -2.54
SMC4-223ENST00000493695 ACANP16112 2415 aa-0.81□□□□□ -2.54
SMC4-223ENST00000493695 ARHGEF12Q9NZN5 1544 aa-0.82□□□□□ -2.54
SMC4-223ENST00000493695 SFT2D2O95562 160 aa-0.82□□□□□ -2.54
SMC4-223ENST00000493695 CATR1Q13166 79 aa-0.82□□□□□ -2.54
SMC4-223ENST00000493695 C1orf54Q8WWF1 131 aa-0.82□□□□□ -2.54
SMC4-223ENST00000493695 TNFP01375 233 aa-0.83□□□□□ -2.54
SMC4-223ENST00000493695 MRPL54Q6P161 138 aaKnown RBP-0.83□□□□□ -2.54
SMC4-223ENST00000493695 TMEM263Q8WUH6 116 aaKnown RBP-0.83□□□□□ -2.54
SMC4-223ENST00000493695 CDC42SE2Q9NRR3 84 aa-0.83□□□□□ -2.54
SMC4-223ENST00000493695 HMGXB3Q12766 1538 aa-0.84□□□□□ -2.54
SMC4-223ENST00000493695 HMGN1P05114 100 aa-0.84□□□□□ -2.54
SMC4-223ENST00000493695 BTAF1O14981 1849 aa-0.85□□□□□ -2.54
SMC4-223ENST00000493695 NBEAL1Q6ZS30 2694 aa-0.85□□□□□ -2.55
SMC4-223ENST00000493695 OOSP1A8MZH6 123 aa-0.85□□□□□ -2.55
SMC4-223ENST00000493695 MGPP08493 103 aa-0.85□□□□□ -2.55
SMC4-223ENST00000493695 MYOZ3Q8TDC0 251 aa-0.85□□□□□ -2.55
SMC4-223ENST00000493695 STAB2Q8WWQ8 2551 aa-0.85□□□□□ -2.55
SMC4-223ENST00000493695 TET3O43151 1660 aa-0.85□□□□□ -2.55
SMC4-223ENST00000493695 MAGI1Q96QZ7 1491 aaPredicted RBP-0.86□□□□□ -2.55
SMC4-223ENST00000493695 IFNGP01579 166 aa-0.86□□□□□ -2.55
SMC4-223ENST00000493695 KRTAP19-7Q3SYF9 63 aa-0.86□□□□□ -2.55
SMC4-223ENST00000493695 PP6455Q8WZ26 134 aa-0.86□□□□□ -2.55
SMC4-223ENST00000493695 TSC22D3Q99576 134 aa-0.86□□□□□ -2.55
SMC4-223ENST00000493695 CUL7Q14999 1698 aa-0.86□□□□□ -2.55
SMC4-223ENST00000493695 GOLGA4Q13439 2230 aaKnown RBP-0.87□□□□□ -2.55
SMC4-223ENST00000493695 NXT2Q9NPJ8 142 aaKnown RBP-0.87□□□□□ -2.55
SMC4-223ENST00000493695 POLA1P09884 1462 aaPredicted RBP-0.87□□□□□ -2.55
SMC4-223ENST00000493695 FLGP20930 4061 aaPredicted RBP-0.88□□□□□ -2.55
SMC4-223ENST00000493695 CHKB-CPT1BH3BT56 60 aa-0.88□□□□□ -2.55
SMC4-223ENST00000493695 IGLC1P0CG04 106 aa-0.88□□□□□ -2.55
SMC4-223ENST00000493695 C10orf113Q5VZT2 155 aa-0.88□□□□□ -2.55
SMC4-223ENST00000493695 PKHD1P08F94 4074 aa-0.88□□□□□ -2.55
SMC4-223ENST00000493695 EHBP1L1Q8N3D4 1523 aa-0.89□□□□□ -2.55
SMC4-223ENST00000493695 NALCNQ8IZF0 1738 aa-0.89□□□□□ -2.55
SMC4-223ENST00000493695 LINC00959A0A1B0GUT2 108 aa-0.89□□□□□ -2.55
SMC4-223ENST00000493695 AKAIN1P0CW23 69 aa-0.89□□□□□ -2.55
SMC4-223ENST00000493695 FAM167A-AS1Q96KT0 104 aa-0.89□□□□□ -2.55
SMC4-223ENST00000493695 FAM107BQ9H098 131 aa-0.89□□□□□ -2.55
SMC4-223ENST00000493695 KTN1Q86UP2 1357 aaKnown RBP-0.89□□□□□ -2.55
SMC4-223ENST00000493695 DIP2CQ9Y2E4 1556 aa-0.89□□□□□ -2.55
SMC4-223ENST00000493695 KIAA0556O60303 1618 aa-0.89□□□□□ -2.55
SMC4-223ENST00000493695 TRBV7-4A0A0J9YYF1 115 aa-0.9□□□□□ -2.55
SMC4-223ENST00000493695 UBE2L5PA0A1B0GUS4 154 aa-0.9□□□□□ -2.55
SMC4-223ENST00000493695 UBE2L3P68036 154 aaKnown RBP-0.9□□□□□ -2.55
SMC4-223ENST00000493695 DPH3P1Q9H4G8 78 aa-0.9□□□□□ -2.55
SMC4-223ENST00000493695 TCHHQ07283 1943 aa-0.91□□□□□ -2.55
SMC4-223ENST00000493695 ROCK2O75116 1388 aaKnown RBP-0.91□□□□□ -2.55
SMC4-223ENST00000493695 WHAMMP3Q1A5X7 153 aa-0.91□□□□□ -2.56
SMC4-223ENST00000493695 MYOM2P54296 1465 aa-0.92□□□□□ -2.56
SMC4-223ENST00000493695 MRC2Q9UBG0 1479 aa-0.92□□□□□ -2.56
SMC4-223ENST00000493695 FAM223AQ8IWN6 122 aa-0.92□□□□□ -2.56
SMC4-223ENST00000493695 UQCR10Q9UDW1 63 aa-0.92□□□□□ -2.56
SMC4-223ENST00000493695 SCN7AQ01118 1682 aa-0.92□□□□□ -2.56
SMC4-223ENST00000493695 SPINK4O60575 86 aa-0.93□□□□□ -2.56
SMC4-223ENST00000493695 ATP5EP56381 51 aaPredicted RBP-0.93□□□□□ -2.56
SMC4-223ENST00000493695 C9orf153Q5TBE3 101 aa-0.93□□□□□ -2.56
SMC4-223ENST00000493695 URB1O60287 2271 aaKnown RBP-0.93□□□□□ -2.56
SMC4-223ENST00000493695 SVEP1Q4LDE5 3571 aa-0.93□□□□□ -2.56
SMC4-223ENST00000493695 UBE2D3P61077 147 aa-0.94□□□□□ -2.56
SMC4-223ENST00000493695 UBE2D2P62837 147 aa-0.94□□□□□ -2.56
SMC4-223ENST00000493695 FAIMQ9NVQ4 179 aa-0.94□□□□□ -2.56
SMC4-223ENST00000493695 ARL2-SNX15V9GYD0 113 aa-0.94□□□□□ -2.56
SMC4-223ENST00000493695 ADGRL2O95490 1459 aa-0.94□□□□□ -2.56
SMC4-223ENST00000493695 TGP01266 2768 aa-0.95□□□□□ -2.56
SMC4-223ENST00000493695 SCAPERQ9BY12 1400 aa-0.95□□□□□ -2.56
SMC4-223ENST00000493695 LOC730098B7Z3J9 87 aa-0.95□□□□□ -2.56
SMC4-223ENST00000493695 LINC01600Q96MT4 127 aa-0.95□□□□□ -2.56
SMC4-223ENST00000493695 IQSEC2Q5JU85 1478 aa-0.95□□□□□ -2.56
SMC4-223ENST00000493695 C1orf167Q5SNV9 1468 aa-0.95□□□□□ -2.56
SMC4-223ENST00000493695 IER3IP1Q9Y5U9 82 aa-0.96□□□□□ -2.56
SMC4-223ENST00000493695 SETBP1Q9Y6X0 1596 aa-0.96□□□□□ -2.56
SMC4-223ENST00000493695 A0A0G2JMZ2 1700 aa-0.97□□□□□ -2.56
SMC4-223ENST00000493695 NUP188Q5SRE5 1749 aa-0.97□□□□□ -2.56
SMC4-223ENST00000493695 XRN1Q8IZH2 1706 aaKnown RBP-0.97□□□□□ -2.56
SMC4-223ENST00000493695 DNAJC13O75165 2243 aa-0.97□□□□□ -2.56
SMC4-223ENST00000493695 F6UZH7 168 aa-0.97□□□□□ -2.56
SMC4-223ENST00000493695 UBA52P62987 128 aaKnown RBP-0.97□□□□□ -2.56
SMC4-223ENST00000493695 DEFB105AQ8NG35 78 aa-0.97□□□□□ -2.56
SMC4-223ENST00000493695 M0R2T5 61 aa-0.98□□□□□ -2.57
SMC4-223ENST00000493695 GNG11P61952 73 aa-0.98□□□□□ -2.57
SMC4-223ENST00000493695 Q0VG73 95 aa-0.98□□□□□ -2.57
SMC4-223ENST00000493695 RPL13AP3Q6NVV1 102 aa-0.98□□□□□ -2.57
SMC4-223ENST00000493695 CNOT1A5YKK6 2376 aaKnown RBP-0.98□□□□□ -2.57
SMC4-223ENST00000493695 NF1P21359 2839 aa-0.99□□□□□ -2.57
SMC4-223ENST00000493695 LAMA5O15230 3695 aa-0.99□□□□□ -2.57
SMC4-223ENST00000493695 FAM24AA6NFZ4 105 aa-0.99□□□□□ -2.57
SMC4-223ENST00000493695 LCN9Q8WX39 176 aa-0.99□□□□□ -2.57
SMC4-223ENST00000493695 TOP2BQ02880 1626 aa-1□□□□□ -2.57
SMC4-223ENST00000493695 KLK9Q2XQG4 91 aa-1□□□□□ -2.57
SMC4-223ENST00000493695 FXYD6Q9H0Q3 95 aa-1□□□□□ -2.57
SMC4-223ENST00000493695 KMT2CQ8NEZ4 4911 aaKnown RBP-1□□□□□ -2.57
SMC4-223ENST00000493695 SETD2Q9BYW2 2564 aaPredicted RBP-1.01□□□□□ -2.57
SMC4-223ENST00000493695 HERC1Q15751 4861 aa-1.01□□□□□ -2.57
SMC4-223ENST00000493695 EFCAB10A6NFE3 127 aa-1.01□□□□□ -2.57
SMC4-223ENST00000493695 DLEU1O43261 78 aa-1.01□□□□□ -2.57
SMC4-223ENST00000493695 COX6CP09669 75 aa-1.01□□□□□ -2.57
SMC4-223ENST00000493695 PRO1933Q9H354 126 aa-1.01□□□□□ -2.57
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms