RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 CCL25O15444 150 aa4.42□□□□□ -1.7
VPS52-219ENST00000493379 REG3AQ06141 175 aa4.42□□□□□ -1.7
VPS52-219ENST00000493379 Q8N8P6 123 aa4.42□□□□□ -1.7
VPS52-219ENST00000493379 UBE2WQ96B02 151 aa4.42□□□□□ -1.7
VPS52-219ENST00000493379 ALKBH7Q9BT30 221 aaPredicted RBP4.42□□□□□ -1.7
VPS52-219ENST00000493379 NXT2Q9NPJ8 142 aaKnown RBP4.42□□□□□ -1.7
VPS52-219ENST00000493379 UBE2D4Q9Y2X8 147 aa4.42□□□□□ -1.7
VPS52-219ENST00000493379 PYGO1Q9Y3Y4 419 aa4.42□□□□□ -1.7
VPS52-219ENST00000493379 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.41□□□□□ -1.7
VPS52-219ENST00000493379 TGIF2-C20orf24A0A0A6YYL0 155 aa4.41□□□□□ -1.7
VPS52-219ENST00000493379 IGKV2-29A2NJV5 120 aaPredicted RBP4.41□□□□□ -1.7
VPS52-219ENST00000493379 UBE2L6O14933 153 aa4.41□□□□□ -1.7
VPS52-219ENST00000493379 MRPS36P82909 103 aaKnown RBP4.41□□□□□ -1.7
VPS52-219ENST00000493379 SMAGPQ0VAQ4 97 aa4.41□□□□□ -1.7
VPS52-219ENST00000493379 GAGE2BQ13066 116 aa4.41□□□□□ -1.7
VPS52-219ENST00000493379 GAGE2EQ4V326 116 aa4.41□□□□□ -1.7
VPS52-219ENST00000493379 GAGE2AQ6NT46 116 aa4.41□□□□□ -1.7
VPS52-219ENST00000493379 ZNF664Q8N3J9 261 aa4.41□□□□□ -1.7
VPS52-219ENST00000493379 PRR26Q8N8Z3 221 aa4.41□□□□□ -1.7
VPS52-219ENST00000493379 OR5A1Q8NGJ0 315 aa4.41□□□□□ -1.7
VPS52-219ENST00000493379 GAGE2DQ9UEU5 116 aa4.41□□□□□ -1.7
VPS52-219ENST00000493379 FCER1GP30273 86 aa4.4□□□□□ -1.71
VPS52-219ENST00000493379 SNRPEP62304 92 aaKnown RBP4.4□□□□□ -1.71
VPS52-219ENST00000493379 WFDC2Q14508 124 aa4.4□□□□□ -1.71
VPS52-219ENST00000493379 PET117Q6UWS5 81 aa4.4□□□□□ -1.71
VPS52-219ENST00000493379 Q8N814 137 aa4.4□□□□□ -1.71
VPS52-219ENST00000493379 DEFB104AQ8WTQ1 72 aa4.4□□□□□ -1.71
VPS52-219ENST00000493379 MAP1LC3AQ9H492 121 aa4.4□□□□□ -1.71
VPS52-219ENST00000493379 Q9HAA7 133 aa4.4□□□□□ -1.71
VPS52-219ENST00000493379 SMCO4Q9NRQ5 59 aa4.4□□□□□ -1.71
VPS52-219ENST00000493379 SPANXA1Q9NS26 97 aa4.4□□□□□ -1.71
VPS52-219ENST00000493379 IGKV2D-24A0A075B6R9 120 aa4.39□□□□□ -1.71
VPS52-219ENST00000493379 LINC00959A0A1B0GUT2 108 aa4.39□□□□□ -1.71
VPS52-219ENST00000493379 LINC01549A6NIU2 74 aa4.39□□□□□ -1.71
VPS52-219ENST00000493379 IGIPA6NJ69 53 aa4.39□□□□□ -1.71
VPS52-219ENST00000493379 CRPP02741 224 aa4.39□□□□□ -1.71
VPS52-219ENST00000493379 RAB5AP20339 215 aa4.39□□□□□ -1.71
VPS52-219ENST00000493379 G0S2P27469 103 aa4.39□□□□□ -1.71
VPS52-219ENST00000493379 IFI27P40305 119 aaPredicted RBP4.39□□□□□ -1.71
VPS52-219ENST00000493379 KIAA1644Q3SXP7 199 aa4.39□□□□□ -1.71
VPS52-219ENST00000493379 ORMDL2Q53FV1 153 aa4.39□□□□□ -1.71
VPS52-219ENST00000493379 AMMECR1LQ6DCA0 310 aa4.39□□□□□ -1.71
VPS52-219ENST00000493379 SPATA12Q7Z6I5 190 aa4.39□□□□□ -1.71
VPS52-219ENST00000493379 TMEM101Q96IK0 257 aa4.39□□□□□ -1.71
VPS52-219ENST00000493379 COLCA2A8K830 154 aa4.38□□□□□ -1.71
VPS52-219ENST00000493379 KRTAP29-1A8MX34 341 aaPredicted RBP4.38□□□□□ -1.71
VPS52-219ENST00000493379 C1orf196B1AJZ1 125 aa4.38□□□□□ -1.71
VPS52-219ENST00000493379 PSCAO43653 123 aa4.38□□□□□ -1.71
VPS52-219ENST00000493379 RPL39P62891 51 aaKnown RBP4.38□□□□□ -1.71
VPS52-219ENST00000493379 FABP9Q0Z7S8 132 aa4.38□□□□□ -1.71
VPS52-219ENST00000493379 C14orf177Q52M58 125 aa4.38□□□□□ -1.71
VPS52-219ENST00000493379 RNASEKQ6P5S7 137 aaKnown RBP4.38□□□□□ -1.71
VPS52-219ENST00000493379 Q75L30 129 aa4.38□□□□□ -1.71
VPS52-219ENST00000493379 FAM19A3Q7Z5A8 133 aa4.38□□□□□ -1.71
VPS52-219ENST00000493379 BAALCQ8WXS3 180 aa4.38□□□□□ -1.71
VPS52-219ENST00000493379 AMELXQ99217 191 aa4.38□□□□□ -1.71
VPS52-219ENST00000493379 TRAPPC1Q9Y5R8 145 aa4.38□□□□□ -1.71
VPS52-219ENST00000493379 IGLV5-52A0A0A0MRZ9 124 aa4.37□□□□□ -1.71
VPS52-219ENST00000493379 CNBPP62633 177 aaKnown RBP4.37□□□□□ -1.71
VPS52-219ENST00000493379 CD164L2Q6UWJ8 174 aa4.37□□□□□ -1.71
VPS52-219ENST00000493379 C2orf66Q6UXQ4 117 aa4.37□□□□□ -1.71
VPS52-219ENST00000493379 Q6ZSA8 131 aa4.37□□□□□ -1.71
VPS52-219ENST00000493379 C18orf32Q8TCD1 76 aa4.37□□□□□ -1.71
VPS52-219ENST00000493379 CHCHD10Q8WYQ3 142 aaPredicted RBP4.37□□□□□ -1.71
VPS52-219ENST00000493379 TOMM6Q96B49 74 aa4.37□□□□□ -1.71
VPS52-219ENST00000493379 TIMM17AQ99595 171 aa4.37□□□□□ -1.71
VPS52-219ENST00000493379 FAT3Q8TDW7 4589 aa4.36□□□□□ -1.71
VPS52-219ENST00000493379 IGLV4-3A0A075B6K6 122 aa4.36□□□□□ -1.71
VPS52-219ENST00000493379 IGHV3OR16-9A0A0B4J2B5 98 aa4.36□□□□□ -1.71
VPS52-219ENST00000493379 LOC389332A0A1B0GUA5 103 aa4.36□□□□□ -1.71
VPS52-219ENST00000493379 SMR3BP02814 79 aaPredicted RBP4.36□□□□□ -1.71
VPS52-219ENST00000493379 PRSS1P07477 247 aa4.36□□□□□ -1.71
VPS52-219ENST00000493379 LINC00614P0C842 121 aa4.36□□□□□ -1.71
VPS52-219ENST00000493379 SS18Q15532 418 aa4.36□□□□□ -1.71
VPS52-219ENST00000493379 ERASQ7Z444 233 aa4.36□□□□□ -1.71
VPS52-219ENST00000493379 CBLN2Q8IUK8 224 aa4.36□□□□□ -1.71
VPS52-219ENST00000493379 CYSLTR1Q9Y271 337 aa4.36□□□□□ -1.71
VPS52-219ENST00000493379 IGLV10-54A0A075B6I4 117 aa4.35□□□□□ -1.71
VPS52-219ENST00000493379 A0A096LNJ9 63 aa4.35□□□□□ -1.71
VPS52-219ENST00000493379 GVQW2A0A096LPI5 108 aaPredicted RBP4.35□□□□□ -1.71
VPS52-219ENST00000493379 KRTAP10-1P60331 282 aa4.35□□□□□ -1.71
VPS52-219ENST00000493379 CLPSL2Q6UWE3 100 aa4.35□□□□□ -1.71
VPS52-219ENST00000493379 Q6ZUT4 128 aa4.35□□□□□ -1.71
VPS52-219ENST00000493379 LINC00173Q6ZV60 143 aa4.35□□□□□ -1.71
VPS52-219ENST00000493379 LINC01561Q8N1V8 128 aa4.35□□□□□ -1.71
VPS52-219ENST00000493379 C15orf56Q8N910 161 aa4.35□□□□□ -1.71
VPS52-219ENST00000493379 C9orf163Q8N9P6 203 aa4.35□□□□□ -1.71
VPS52-219ENST00000493379 TMEM141Q96I45 108 aa4.35□□□□□ -1.71
VPS52-219ENST00000493379 OPRPNQ99935 248 aaPredicted RBP4.35□□□□□ -1.71
VPS52-219ENST00000493379 UBE2D1P51668 147 aa4.34□□□□□ -1.71
VPS52-219ENST00000493379 XGP55808 180 aa4.34□□□□□ -1.71
VPS52-219ENST00000493379 RAB5BP61020 215 aa4.34□□□□□ -1.71
VPS52-219ENST00000493379 LINC00242Q5T6M2 205 aa4.34□□□□□ -1.71
VPS52-219ENST00000493379 SDIM1Q6ZPB5 146 aa4.34□□□□□ -1.71
VPS52-219ENST00000493379 A0A087WZ39 114 aa4.33□□□□□ -1.72
VPS52-219ENST00000493379 TRAV13-1A0A0B4J241 112 aa4.33□□□□□ -1.72
VPS52-219ENST00000493379 IGHV1-58A0A0C4DH39 117 aa4.33□□□□□ -1.72
VPS52-219ENST00000493379 F8WDY8 70 aa4.33□□□□□ -1.72
VPS52-219ENST00000493379 LECT2O14960 151 aa4.33□□□□□ -1.72
VPS52-219ENST00000493379 TRGC2P03986 189 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms