RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 IGLV5-52A0A0A0MRZ9 124 aa5.32□□□□□ -1.56
SYNE1-228ENST00000490135 PCOTHQ58A44 107 aa5.32□□□□□ -1.56
SYNE1-228ENST00000490135 SMIM11BQ8TCY0 68 aa5.32□□□□□ -1.56
SYNE1-228ENST00000490135 CACNA1IQ9P0X4 2223 aa5.32□□□□□ -1.56
SYNE1-228ENST00000490135 INAFM1C9JVW0 142 aa5.32□□□□□ -1.56
SYNE1-228ENST00000490135 RBM12B-AS1Q9P1G2 102 aa5.32□□□□□ -1.56
SYNE1-228ENST00000490135 MYOFQ9NZM1 2061 aa5.32□□□□□ -1.56
SYNE1-228ENST00000490135 COL5A1P20908 1838 aaPredicted RBP5.32□□□□□ -1.56
SYNE1-228ENST00000490135 DEFB114Q30KQ6 69 aa5.32□□□□□ -1.56
SYNE1-228ENST00000490135 LELP1Q5T871 98 aa5.32□□□□□ -1.56
SYNE1-228ENST00000490135 BBC3Q96PG8 261 aaPredicted RBP5.32□□□□□ -1.56
SYNE1-228ENST00000490135 ALPK2Q86TB3 2170 aa5.32□□□□□ -1.56
SYNE1-228ENST00000490135 PTPRSQ13332 1948 aa5.31□□□□□ -1.56
SYNE1-228ENST00000490135 ADORA2A-AS1P86434 159 aa5.31□□□□□ -1.56
SYNE1-228ENST00000490135 COX17Q14061 63 aa5.31□□□□□ -1.56
SYNE1-228ENST00000490135 PLA2G2CQ5R387 149 aa5.31□□□□□ -1.56
SYNE1-228ENST00000490135 Q8N3U1 123 aa5.31□□□□□ -1.56
SYNE1-228ENST00000490135 LIMD2Q9BT23 127 aa5.31□□□□□ -1.56
SYNE1-228ENST00000490135 CEP290O15078 2479 aa5.31□□□□□ -1.56
SYNE1-228ENST00000490135 IGIPA6NJ69 53 aa5.31□□□□□ -1.56
SYNE1-228ENST00000490135 PRLHP81277 87 aa5.3□□□□□ -1.56
SYNE1-228ENST00000490135 CCDC140Q96MF4 163 aa5.3□□□□□ -1.56
SYNE1-228ENST00000490135 FER1L5A0AVI2 2057 aa5.3□□□□□ -1.56
SYNE1-228ENST00000490135 REG3GQ6UW15 175 aa5.3□□□□□ -1.56
SYNE1-228ENST00000490135 CNFNQ9BYD5 112 aa5.3□□□□□ -1.56
SYNE1-228ENST00000490135 MUC7Q8TAX7 377 aa5.3□□□□□ -1.56
SYNE1-228ENST00000490135 PCNX3Q9H6A9 2034 aa5.3□□□□□ -1.56
SYNE1-228ENST00000490135 Q9UF83 564 aa5.3□□□□□ -1.56
SYNE1-228ENST00000490135 CACNA1BQ00975 2339 aa5.3□□□□□ -1.56
SYNE1-228ENST00000490135 Q6YL49 198 aa5.3□□□□□ -1.56
SYNE1-228ENST00000490135 HCG22E2RYF7 251 aa5.29□□□□□ -1.56
SYNE1-228ENST00000490135 LINC01547P58512 204 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-228ENST00000490135 C1orf137Q5JT78 98 aa5.29□□□□□ -1.56
SYNE1-228ENST00000490135 C1orf229Q6ZS94 237 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-228ENST00000490135 ZNF702PQ9H963 129 aa5.29□□□□□ -1.56
SYNE1-228ENST00000490135 MED12LQ86YW9 2145 aa5.29□□□□□ -1.56
SYNE1-228ENST00000490135 ODF3BA8MYP8 253 aa5.29□□□□□ -1.56
SYNE1-228ENST00000490135 K7EQG2 157 aa5.29□□□□□ -1.56
SYNE1-228ENST00000490135 H0Y9P7 68 aa5.29□□□□□ -1.56
SYNE1-228ENST00000490135 SPINT4Q6UDR6 99 aa5.28□□□□□ -1.56
SYNE1-228ENST00000490135 C7orf65Q6ZTY9 151 aa5.28□□□□□ -1.56
SYNE1-228ENST00000490135 H7BZZ5 65 aa5.28□□□□□ -1.56
SYNE1-228ENST00000490135 LINC00959A0A1B0GUT2 108 aa5.28□□□□□ -1.56
SYNE1-228ENST00000490135 LCA10Q71F78 164 aa5.28□□□□□ -1.56
SYNE1-228ENST00000490135 DOCK7Q96N67 2140 aa5.28□□□□□ -1.56
SYNE1-228ENST00000490135 U3KQA8 63 aa5.28□□□□□ -1.56
SYNE1-228ENST00000490135 hDV103S1A0JD37 113 aa5.28□□□□□ -1.56
SYNE1-228ENST00000490135 NCOA6Q14686 2063 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-228ENST00000490135 OXTP01178 125 aa5.27□□□□□ -1.57
SYNE1-228ENST00000490135 LINC01556Q5JQF7 62 aa5.27□□□□□ -1.57
SYNE1-228ENST00000490135 RNASE3P12724 160 aaKnown RBP5.27□□□□□ -1.57
SYNE1-228ENST00000490135 SPAG11AQ6PDA7 123 aa5.27□□□□□ -1.57
SYNE1-228ENST00000490135 NTM-AS1Q6ZSK4 140 aa5.27□□□□□ -1.57
SYNE1-228ENST00000490135 IGLV1-47P01700 117 aa5.27□□□□□ -1.57
SYNE1-228ENST00000490135 TCF20Q9UGU0 1960 aaKnown RBP5.27□□□□□ -1.57
SYNE1-228ENST00000490135 ZNF580Q9UK33 172 aa5.27□□□□□ -1.57
SYNE1-228ENST00000490135 COL6A6A6NMZ7 2263 aa5.27□□□□□ -1.57
SYNE1-228ENST00000490135 Q9BRP9 147 aa5.26□□□□□ -1.57
SYNE1-228ENST00000490135 USF3Q68DE3 2245 aa5.26□□□□□ -1.57
SYNE1-228ENST00000490135 ZNF407Q9C0G0 2248 aa5.26□□□□□ -1.57
SYNE1-228ENST00000490135 M0QY20 66 aa5.26□□□□□ -1.57
SYNE1-228ENST00000490135 ADAMTS9Q9P2N4 1935 aa5.26□□□□□ -1.57
SYNE1-228ENST00000490135 EML6Q6ZMW3 1958 aa5.26□□□□□ -1.57
SYNE1-228ENST00000490135 TSHBP01222 138 aa5.26□□□□□ -1.57
SYNE1-228ENST00000490135 COL4A5P29400 1685 aa5.26□□□□□ -1.57
SYNE1-228ENST00000490135 A0A1B0GU69 56 aa5.26□□□□□ -1.57
SYNE1-228ENST00000490135 IGKV2D-30A0A075B6S6 120 aa5.26□□□□□ -1.57
SYNE1-228ENST00000490135 IGKV2-30P06310 120 aa5.26□□□□□ -1.57
SYNE1-228ENST00000490135 ACYP2P14621 99 aa5.26□□□□□ -1.57
SYNE1-228ENST00000490135 IGFL2Q6UWQ7 119 aa5.25□□□□□ -1.57
SYNE1-228ENST00000490135 Q8IZM0 81 aa5.25□□□□□ -1.57
SYNE1-228ENST00000490135 COL4A4P53420 1690 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-228ENST00000490135 CYSTM1Q9H1C7 97 aa5.25□□□□□ -1.57
SYNE1-228ENST00000490135 C11orf21Q9P2W6 132 aa5.25□□□□□ -1.57
SYNE1-228ENST00000490135 MSMPQ1L6U9 139 aa5.25□□□□□ -1.57
SYNE1-228ENST00000490135 CYSRT1A8MQ03 144 aa5.24□□□□□ -1.57
SYNE1-228ENST00000490135 FSTL3O95633 263 aa5.24□□□□□ -1.57
SYNE1-228ENST00000490135 EGFEM1PQ0D2K5 195 aa5.24□□□□□ -1.57
SYNE1-228ENST00000490135 KLKP1Q107X0 134 aa5.24□□□□□ -1.57
SYNE1-228ENST00000490135 C6orf223Q8N319 242 aa5.24□□□□□ -1.57
SYNE1-228ENST00000490135 PROK1P58294 105 aa5.24□□□□□ -1.57
SYNE1-228ENST00000490135 Q8N814 137 aa5.24□□□□□ -1.57
SYNE1-228ENST00000490135 PSMG3-AS1Q96PY0 264 aa5.24□□□□□ -1.57
SYNE1-228ENST00000490135 BRCA2P51587 3418 aa5.24□□□□□ -1.57
SYNE1-228ENST00000490135 LY6G6DO95868 133 aa5.24□□□□□ -1.57
SYNE1-228ENST00000490135 MRGPRG-AS1Q2M3A8 158 aa5.24□□□□□ -1.57
SYNE1-228ENST00000490135 TM2D3Q9BRN9 247 aa5.24□□□□□ -1.57
SYNE1-228ENST00000490135 A8MUN3 132 aa5.23□□□□□ -1.57
SYNE1-228ENST00000490135 POLR2KP53803 58 aaKnown RBP5.23□□□□□ -1.57
SYNE1-228ENST00000490135 C1orf134Q5TEV5 83 aa5.23□□□□□ -1.57
SYNE1-228ENST00000490135 Q8N2B8 174 aa5.23□□□□□ -1.57
SYNE1-228ENST00000490135 NOTCH3Q9UM47 2321 aa5.23□□□□□ -1.57
SYNE1-228ENST00000490135 FAM218AQ96MZ4 157 aa5.23□□□□□ -1.57
SYNE1-228ENST00000490135 EML5Q05BV3 1969 aa5.23□□□□□ -1.57
SYNE1-228ENST00000490135 PLCE1Q9P212 2302 aa5.23□□□□□ -1.57
SYNE1-228ENST00000490135 CACNA1EQ15878 2313 aa5.22□□□□□ -1.57
SYNE1-228ENST00000490135 A0A087WSZ3 146 aa5.22□□□□□ -1.57
SYNE1-228ENST00000490135 TET1Q8NFU7 2136 aa5.22□□□□□ -1.57
SYNE1-228ENST00000490135 FP248Q71RG6 208 aaPredicted RBP5.22□□□□□ -1.57
SYNE1-228ENST00000490135 CENPFP49454 3210 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms