RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 SCXQ7RTU7 201 aa9.51□□□□□ -0.89
USP4-212ENST00000486549 YPEL4Q96NS1 127 aa9.51□□□□□ -0.89
USP4-212ENST00000486549 ZNF561-AS1K7EIQ3 104 aa9.5□□□□□ -0.89
USP4-212ENST00000486549 G0S2P27469 103 aa9.5□□□□□ -0.89
USP4-212ENST00000486549 TOMM6Q96B49 74 aa9.5□□□□□ -0.89
USP4-212ENST00000486549 C2orf88Q9BSF0 95 aa9.5□□□□□ -0.89
USP4-212ENST00000486549 IGIPA6NJ69 53 aa9.49□□□□□ -0.89
USP4-212ENST00000486549 APOMO95445 188 aa9.49□□□□□ -0.89
USP4-212ENST00000486549 INAFM2P0DMQ5 153 aa9.49□□□□□ -0.89
USP4-212ENST00000486549 SDIM1Q6ZPB5 146 aa9.49□□□□□ -0.89
USP4-212ENST00000486549 LINC00173Q6ZV60 143 aa9.49□□□□□ -0.89
USP4-212ENST00000486549 C18orf32Q8TCD1 76 aa9.49□□□□□ -0.89
USP4-212ENST00000486549 CHAC1Q9BUX1 264 aa9.49□□□□□ -0.89
USP4-212ENST00000486549 VCX2Q9H322 139 aa9.49□□□□□ -0.89
USP4-212ENST00000486549 LINC01546A6NGU7 62 aa9.48□□□□□ -0.89
USP4-212ENST00000486549 SCGB3A1Q96QR1 104 aa9.48□□□□□ -0.89
USP4-212ENST00000486549 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.48□□□□□ -0.89
USP4-212ENST00000486549 FAT1Q14517 4588 aa9.48□□□□□ -0.89
USP4-212ENST00000486549 IGLV4-69A0A075B6H9 119 aa9.47□□□□□ -0.89
USP4-212ENST00000486549 IGHV3OR16-9A0A0B4J2B5 98 aa9.47□□□□□ -0.89
USP4-212ENST00000486549 NPSP0C0P6 89 aa9.47□□□□□ -0.89
USP4-212ENST00000486549 UBE2D1P51668 147 aa9.47□□□□□ -0.89
USP4-212ENST00000486549 LINC00242Q5T6M2 205 aa9.47□□□□□ -0.89
USP4-212ENST00000486549 CIRBP-AS1Q8TBR5 109 aa9.47□□□□□ -0.89
USP4-212ENST00000486549 CARD19Q96LW7 228 aa9.47□□□□□ -0.89
USP4-212ENST00000486549 AMELXQ99217 191 aa9.47□□□□□ -0.89
USP4-212ENST00000486549 TIMM17AQ99595 171 aa9.47□□□□□ -0.89
USP4-212ENST00000486549 PANO1I0J062 215 aa9.46□□□□□ -0.9
USP4-212ENST00000486549 CHTF8P0CG12 524 aa9.46□□□□□ -0.9
USP4-212ENST00000486549 COX6A2Q02221 97 aa9.46□□□□□ -0.9
USP4-212ENST00000486549 SPAG11BQ08648 103 aa9.46□□□□□ -0.9
USP4-212ENST00000486549 SYCNQ0VAF6 134 aa9.46□□□□□ -0.9
USP4-212ENST00000486549 PAPPA-AS1Q5QFB9 102 aa9.46□□□□□ -0.9
USP4-212ENST00000486549 ERASQ7Z444 233 aa9.46□□□□□ -0.9
USP4-212ENST00000486549 ORAOV1Q8WV07 137 aa9.46□□□□□ -0.9
USP4-212ENST00000486549 LINC00528Q8N1L1 170 aa9.45□□□□□ -0.9
USP4-212ENST00000486549 CAMK2N2Q96S95 79 aa9.45□□□□□ -0.9
USP4-212ENST00000486549 PLA2G1BP04054 148 aaKnown RBP9.44□□□□□ -0.9
USP4-212ENST00000486549 LINC00614P0C842 121 aa9.44□□□□□ -0.9
USP4-212ENST00000486549 OR10D4PQ8NGN7 298 aa9.44□□□□□ -0.9
USP4-212ENST00000486549 DPH3Q96FX2 82 aa9.44□□□□□ -0.9
USP4-212ENST00000486549 URB1-AS1Q96HZ7 61 aa9.44□□□□□ -0.9
USP4-212ENST00000486549 IGKV2-24A0A0C4DH68 120 aa9.43□□□□□ -0.9
USP4-212ENST00000486549 LINC01549A6NIU2 74 aa9.43□□□□□ -0.9
USP4-212ENST00000486549 PMCHL1Q16048 86 aa9.43□□□□□ -0.9
USP4-212ENST00000486549 Q6ZRU5 148 aa9.43□□□□□ -0.9
USP4-212ENST00000486549 A0A087WZ39 114 aa9.42□□□□□ -0.9
USP4-212ENST00000486549 RAB5BP61020 215 aa9.42□□□□□ -0.9
USP4-212ENST00000486549 C2orf48Q96LS8 159 aa9.42□□□□□ -0.9
USP4-212ENST00000486549 A0A096LNI7 61 aa9.41□□□□□ -0.9
USP4-212ENST00000486549 A0A096LNJ9 63 aa9.41□□□□□ -0.9
USP4-212ENST00000486549 A0A0J9YXV3 536 aa9.41□□□□□ -0.9
USP4-212ENST00000486549 SPACA4Q8TDM5 124 aa9.41□□□□□ -0.9
USP4-212ENST00000486549 GEMIN7Q9H840 131 aaKnown RBP9.41□□□□□ -0.9
USP4-212ENST00000486549 VPS13BQ7Z7G8 4022 aa9.4□□□□□ -0.9
USP4-212ENST00000486549 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.4□□□□□ -0.9
USP4-212ENST00000486549 HBDP02042 147 aa9.4□□□□□ -0.9
USP4-212ENST00000486549 TRGC2P03986 189 aa9.4□□□□□ -0.9
USP4-212ENST00000486549 HERVK_113P63121 156 aa9.4□□□□□ -0.9
USP4-212ENST00000486549 CIRBPQ14011 172 aaKnown RBP9.4□□□□□ -0.9
USP4-212ENST00000486549 MAJINQ3KP22 176 aa9.4□□□□□ -0.9
USP4-212ENST00000486549 FAM19A3Q7Z5A8 133 aa9.4□□□□□ -0.9
USP4-212ENST00000486549 PKIGQ9Y2B9 76 aa9.4□□□□□ -0.9
USP4-212ENST00000486549 A0A087WYN8 130 aa9.39□□□□□ -0.91
USP4-212ENST00000486549 NDUFA1O15239 70 aa9.39□□□□□ -0.91
USP4-212ENST00000486549 NDUFA6P56556 154 aa9.39□□□□□ -0.91
USP4-212ENST00000486549 SEC11AP67812 179 aa9.39□□□□□ -0.91
USP4-212ENST00000486549 CST9LQ9H4G1 147 aa9.39□□□□□ -0.91
USP4-212ENST00000486549 SRRM2Q9UQ35 2752 aaKnown RBP9.38□□□□□ -0.91
USP4-212ENST00000486549 PMVKQ15126 192 aa9.38□□□□□ -0.91
USP4-212ENST00000486549 LINC00469Q8N7U9 141 aa9.38□□□□□ -0.91
USP4-212ENST00000486549 TOMM7Q9P0U1 55 aa9.38□□□□□ -0.91
USP4-212ENST00000486549 CDKN2A-AS1Q9UH64 79 aa9.38□□□□□ -0.91
USP4-212ENST00000486549 LOC107984640A0A0U1RRK4 108 aa9.37□□□□□ -0.91
USP4-212ENST00000486549 SCO1O75880 301 aa9.37□□□□□ -0.91
USP4-212ENST00000486549 RPL18AQ02543 176 aaKnown RBP9.37□□□□□ -0.91
USP4-212ENST00000486549 GAGE2BQ13066 116 aa9.37□□□□□ -0.91
USP4-212ENST00000486549 C10orf25Q5T742 122 aa9.37□□□□□ -0.91
USP4-212ENST00000486549 UNQ6190/PRO20217Q6UXQ8 127 aa9.37□□□□□ -0.91
USP4-212ENST00000486549 LINC01561Q8N1V8 128 aa9.37□□□□□ -0.91
USP4-212ENST00000486549 PACRGQ96M98 296 aaPredicted RBP9.37□□□□□ -0.91
USP4-212ENST00000486549 TINCRA0A1B0GVN0 87 aa9.36□□□□□ -0.91
USP4-212ENST00000486549 COLCA2A8K830 154 aa9.36□□□□□ -0.91
USP4-212ENST00000486549 KIAA0087Q14695 138 aa9.36□□□□□ -0.91
USP4-212ENST00000486549 PDZD11Q5EBL8 140 aa9.36□□□□□ -0.91
USP4-212ENST00000486549 BAGE3Q86Y29 109 aa9.36□□□□□ -0.91
USP4-212ENST00000486549 STPG4Q8N801 248 aa9.36□□□□□ -0.91
USP4-212ENST00000486549 CHCHD1Q96BP2 118 aaKnown RBP9.36□□□□□ -0.91
USP4-212ENST00000486549 F8WDY8 70 aa9.35□□□□□ -0.91
USP4-212ENST00000486549 PRSS2P07478 247 aa9.35□□□□□ -0.91
USP4-212ENST00000486549 PTTG1IPP53801 180 aa9.35□□□□□ -0.91
USP4-212ENST00000486549 C2orf82Q6UX34 121 aa9.35□□□□□ -0.91
USP4-212ENST00000486549 MRPL35Q9NZE8 188 aaKnown RBP9.35□□□□□ -0.91
USP4-212ENST00000486549 LINC00474Q9P2X8 69 aa9.35□□□□□ -0.91
USP4-212ENST00000486549 C6orf48Q9UBA6 75 aa9.35□□□□□ -0.91
USP4-212ENST00000486549 ATP5LO75964 103 aa9.34□□□□□ -0.91
USP4-212ENST00000486549 RNF151Q2KHN1 245 aa9.34□□□□□ -0.91
USP4-212ENST00000486549 PLAC8Q9NZF1 115 aa9.34□□□□□ -0.91
USP4-212ENST00000486549 HSBP1O75506 76 aa9.33□□□□□ -0.92
USP4-212ENST00000486549 RPL37AP61513 92 aaKnown RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms