RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 GEMIN7Q9H840 131 aaKnown RBP5.31□□□□□ -1.56
USP40-216ENST00000485943 CSDC2Q9Y534 153 aaKnown RBP5.31□□□□□ -1.56
USP40-216ENST00000485943 IGHV3-64A0A075B6Q5 118 aa5.3□□□□□ -1.56
USP40-216ENST00000485943 CDK2AP2O75956 126 aa5.3□□□□□ -1.56
USP40-216ENST00000485943 PRSS2P07478 247 aa5.3□□□□□ -1.56
USP40-216ENST00000485943 SEC11AP67812 179 aa5.3□□□□□ -1.56
USP40-216ENST00000485943 SLC7A5P1Q8MH63 180 aa5.3□□□□□ -1.56
USP40-216ENST00000485943 WFDC2Q14508 124 aa5.29□□□□□ -1.56
USP40-216ENST00000485943 KRTAP9-9Q9BYP9 154 aa5.29□□□□□ -1.56
USP40-216ENST00000485943 KRTAP9-4Q9BYQ2 154 aa5.29□□□□□ -1.56
USP40-216ENST00000485943 FRAS1Q86XX4 4008 aa5.29□□□□□ -1.56
USP40-216ENST00000485943 PRSS47A8MTI9 375 aa5.28□□□□□ -1.56
USP40-216ENST00000485943 PRSS1P07477 247 aa5.28□□□□□ -1.56
USP40-216ENST00000485943 MRPS36P82909 103 aaKnown RBP5.28□□□□□ -1.56
USP40-216ENST00000485943 C5orf38Q86SI9 138 aa5.28□□□□□ -1.56
USP40-216ENST00000485943 BAGE3Q86Y29 109 aa5.28□□□□□ -1.56
USP40-216ENST00000485943 CAMK2N2Q96S95 79 aa5.28□□□□□ -1.56
USP40-216ENST00000485943 ALKBH7Q9BT30 221 aaPredicted RBP5.28□□□□□ -1.56
USP40-216ENST00000485943 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.27□□□□□ -1.57
USP40-216ENST00000485943 LINC00614P0C842 121 aa5.27□□□□□ -1.57
USP40-216ENST00000485943 SPAG11BQ08648 103 aa5.27□□□□□ -1.57
USP40-216ENST00000485943 LINC01620Q4KN68 170 aa5.27□□□□□ -1.57
USP40-216ENST00000485943 CBLN2Q8IUK8 224 aa5.27□□□□□ -1.57
USP40-216ENST00000485943 ORAOV1Q8WV07 137 aa5.27□□□□□ -1.57
USP40-216ENST00000485943 CARD19Q96LW7 228 aa5.27□□□□□ -1.57
USP40-216ENST00000485943 TOMM7Q9P0U1 55 aa5.27□□□□□ -1.57
USP40-216ENST00000485943 PYGO1Q9Y3Y4 419 aa5.27□□□□□ -1.57
USP40-216ENST00000485943 EPPK1P58107 5090 aaKnown RBP5.27□□□□□ -1.57
USP40-216ENST00000485943 EPM2AB3EWF7 344 aa5.26□□□□□ -1.57
USP40-216ENST00000485943 HSBP1O75506 76 aa5.26□□□□□ -1.57
USP40-216ENST00000485943 HBDP02042 147 aa5.26□□□□□ -1.57
USP40-216ENST00000485943 KRTAP10-1P60331 282 aa5.26□□□□□ -1.57
USP40-216ENST00000485943 CKS1BP61024 79 aa5.26□□□□□ -1.57
USP40-216ENST00000485943 HERVK_113P63121 156 aa5.26□□□□□ -1.57
USP40-216ENST00000485943 FOXI1Q12951 378 aa5.26□□□□□ -1.57
USP40-216ENST00000485943 ERASQ7Z444 233 aa5.26□□□□□ -1.57
USP40-216ENST00000485943 TOMM6Q96B49 74 aa5.26□□□□□ -1.57
USP40-216ENST00000485943 TIMM17AQ99595 171 aa5.26□□□□□ -1.57
USP40-216ENST00000485943 OPRPNQ99935 248 aaPredicted RBP5.26□□□□□ -1.57
USP40-216ENST00000485943 BIRC6Q9NR09 4857 aa5.26□□□□□ -1.57
USP40-216ENST00000485943 DNAH10Q8IVF4 4471 aa5.25□□□□□ -1.57
USP40-216ENST00000485943 IGLV4-69A0A075B6H9 119 aa5.25□□□□□ -1.57
USP40-216ENST00000485943 IGLV4-3A0A075B6K6 122 aa5.25□□□□□ -1.57
USP40-216ENST00000485943 IGKV2-24A0A0C4DH68 120 aa5.25□□□□□ -1.57
USP40-216ENST00000485943 H3BRM9 83 aa5.25□□□□□ -1.57
USP40-216ENST00000485943 NDUFA1O15239 70 aa5.25□□□□□ -1.57
USP40-216ENST00000485943 ATP5LO75964 103 aa5.25□□□□□ -1.57
USP40-216ENST00000485943 NPSP0C0P6 89 aa5.25□□□□□ -1.57
USP40-216ENST00000485943 RPL18AQ02543 176 aaKnown RBP5.25□□□□□ -1.57
USP40-216ENST00000485943 SYCNQ0VAF6 134 aa5.25□□□□□ -1.57
USP40-216ENST00000485943 LINC00469Q8N7U9 141 aa5.25□□□□□ -1.57
USP40-216ENST00000485943 OR10D4PQ8NGN7 298 aa5.25□□□□□ -1.57
USP40-216ENST00000485943 LINC00474Q9P2X8 69 aa5.25□□□□□ -1.57
USP40-216ENST00000485943 GVQW2A0A096LPI5 108 aaPredicted RBP5.24□□□□□ -1.57
USP40-216ENST00000485943 SMR3BP02814 79 aaPredicted RBP5.24□□□□□ -1.57
USP40-216ENST00000485943 CNBPP62633 177 aaKnown RBP5.24□□□□□ -1.57
USP40-216ENST00000485943 HAMPP81172 84 aa5.24□□□□□ -1.57
USP40-216ENST00000485943 MAJINQ3KP22 176 aa5.24□□□□□ -1.57
USP40-216ENST00000485943 C6orf226Q5I0X4 101 aa5.24□□□□□ -1.57
USP40-216ENST00000485943 C15orf56Q8N910 161 aa5.24□□□□□ -1.57
USP40-216ENST00000485943 C9orf163Q8N9P6 203 aa5.24□□□□□ -1.57
USP40-216ENST00000485943 H0Y8G0 127 aa5.23□□□□□ -1.57
USP40-216ENST00000485943 COX6A2Q02221 97 aa5.23□□□□□ -1.57
USP40-216ENST00000485943 GAGE2BQ13066 116 aa5.23□□□□□ -1.57
USP40-216ENST00000485943 PMVKQ15126 192 aa5.23□□□□□ -1.57
USP40-216ENST00000485943 C18orf32Q8TCD1 76 aa5.23□□□□□ -1.57
USP40-216ENST00000485943 C7orf33Q8WU49 177 aa5.23□□□□□ -1.57
USP40-216ENST00000485943 CHCHD1Q96BP2 118 aaKnown RBP5.23□□□□□ -1.57
USP40-216ENST00000485943 LINC00526Q96FQ7 95 aa5.23□□□□□ -1.57
USP40-216ENST00000485943 LOC107984640A0A0U1RRK4 108 aa5.22□□□□□ -1.57
USP40-216ENST00000485943 F8WDY8 70 aa5.22□□□□□ -1.57
USP40-216ENST00000485943 TRGC2P03986 189 aa5.22□□□□□ -1.57
USP40-216ENST00000485943 UBE2D1P51668 147 aa5.22□□□□□ -1.57
USP40-216ENST00000485943 PMCHL1Q16048 86 aa5.22□□□□□ -1.57
USP40-216ENST00000485943 C2orf48Q96LS8 159 aa5.22□□□□□ -1.57
USP40-216ENST00000485943 CHAC1Q9BUX1 264 aa5.22□□□□□ -1.57
USP40-216ENST00000485943 LINC00242Q5T6M2 205 aa5.21□□□□□ -1.58
USP40-216ENST00000485943 Q5VSD8 79 aa5.21□□□□□ -1.58
USP40-216ENST00000485943 KRTAP26-1Q6PEX3 210 aa5.21□□□□□ -1.58
USP40-216ENST00000485943 Q8N1X5 172 aa5.21□□□□□ -1.58
USP40-216ENST00000485943 DNAH2Q9P225 4427 aa5.21□□□□□ -1.58
USP40-216ENST00000485943 HECTD4Q9Y4D8 3996 aa5.2□□□□□ -1.58
USP40-216ENST00000485943 A0A087WZ39 114 aa5.2□□□□□ -1.58
USP40-216ENST00000485943 A0A0J9YXV3 536 aa5.2□□□□□ -1.58
USP40-216ENST00000485943 IGIPA6NJ69 53 aa5.2□□□□□ -1.58
USP40-216ENST00000485943 CXCL5P42830 114 aa5.2□□□□□ -1.58
USP40-216ENST00000485943 TMEM170BQ5T4T1 132 aa5.2□□□□□ -1.58
USP40-216ENST00000485943 LCE4AQ5TA78 99 aa5.2□□□□□ -1.58
USP40-216ENST00000485943 ZC2HC1BQ5TFG8 222 aa5.2□□□□□ -1.58
USP40-216ENST00000485943 SCXQ7RTU7 201 aa5.2□□□□□ -1.58
USP40-216ENST00000485943 AMELXQ99217 191 aa5.2□□□□□ -1.58
USP40-216ENST00000485943 HSPB8Q9UJY1 196 aa5.2□□□□□ -1.58
USP40-216ENST00000485943 DNAH17Q9UFH2 4485 aa5.19□□□□□ -1.58
USP40-216ENST00000485943 IGHV3OR16-9A0A0B4J2B5 98 aa5.19□□□□□ -1.58
USP40-216ENST00000485943 TINCRA0A1B0GVN0 87 aa5.19□□□□□ -1.58
USP40-216ENST00000485943 ATP6V1G1O75348 118 aa5.19□□□□□ -1.58
USP40-216ENST00000485943 LEPROTL1O95214 131 aa5.19□□□□□ -1.58
USP40-216ENST00000485943 S100A1P23297 94 aa5.19□□□□□ -1.58
USP40-216ENST00000485943 RPL37AP61513 92 aaKnown RBP5.19□□□□□ -1.58
USP40-216ENST00000485943 Q6ZRU5 148 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms