RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 PLNP26678 52 aa11.87□□□□□ -0.51
SMARCD3-212ENST00000485610 HERVK_113P63121 156 aa11.87□□□□□ -0.51
SMARCD3-212ENST00000485610 C11orf86A6NJI1 115 aa11.86□□□□□ -0.51
SMARCD3-212ENST00000485610 DPM2O94777 84 aa11.86□□□□□ -0.51
SMARCD3-212ENST00000485610 CD164L2Q6UWJ8 174 aa11.86□□□□□ -0.51
SMARCD3-212ENST00000485610 AKR1D1P51857 326 aa11.85□□□□□ -0.51
SMARCD3-212ENST00000485610 IGLV5-45A0A087WSX0 123 aa11.84□□□□□ -0.51
SMARCD3-212ENST00000485610 GAGE12HA6NDE8 117 aa11.84□□□□□ -0.51
SMARCD3-212ENST00000485610 IGKCP01834 107 aa11.84□□□□□ -0.51
SMARCD3-212ENST00000485610 COX6A2Q02221 97 aa11.84□□□□□ -0.51
SMARCD3-212ENST00000485610 LINC00469Q8N7U9 141 aa11.84□□□□□ -0.51
SMARCD3-212ENST00000485610 TM2D2Q9BX73 214 aa11.84□□□□□ -0.51
SMARCD3-212ENST00000485610 COX11Q9Y6N1 276 aa11.84□□□□□ -0.51
SMARCD3-212ENST00000485610 IGHV3OR16-9A0A0B4J2B5 98 aa11.83□□□□□ -0.52
SMARCD3-212ENST00000485610 FOXI1Q12951 378 aa11.83□□□□□ -0.52
SMARCD3-212ENST00000485610 KRTAP26-1Q6PEX3 210 aa11.83□□□□□ -0.52
SMARCD3-212ENST00000485610 LOC105371267A0A1B0GV96 52 aa11.83□□□□□ -0.52
SMARCD3-212ENST00000485610 SCGB1D1O95968 90 aa11.83□□□□□ -0.52
SMARCD3-212ENST00000485610 ZNF22P17026 224 aaPredicted RBP11.83□□□□□ -0.52
SMARCD3-212ENST00000485610 C6orf223Q8N319 242 aa11.82□□□□□ -0.52
SMARCD3-212ENST00000485610 CDKN2A-AS1Q9UH64 79 aa11.82□□□□□ -0.52
SMARCD3-212ENST00000485610 KMT2AQ03164 3969 aa11.81□□□□□ -0.52
SMARCD3-212ENST00000485610 H3BRM9 83 aa11.81□□□□□ -0.52
SMARCD3-212ENST00000485610 COX7A2LO14548 114 aa11.81□□□□□ -0.52
SMARCD3-212ENST00000485610 JOSD1Q15040 202 aaPredicted RBP11.81□□□□□ -0.52
SMARCD3-212ENST00000485610 TMEM170BQ5T4T1 132 aa11.81□□□□□ -0.52
SMARCD3-212ENST00000485610 A0A087WZ39 114 aa11.8□□□□□ -0.52
SMARCD3-212ENST00000485610 C5orf38Q86SI9 138 aa11.8□□□□□ -0.52
SMARCD3-212ENST00000485610 Q6ZRN7 208 aaPredicted RBP11.79□□□□□ -0.52
SMARCD3-212ENST00000485610 PSCAO43653 123 aa11.78□□□□□ -0.52
SMARCD3-212ENST00000485610 C1orf134Q5TEV5 83 aa11.78□□□□□ -0.52
SMARCD3-212ENST00000485610 ATOH7Q8N100 152 aa11.78□□□□□ -0.52
SMARCD3-212ENST00000485610 LINC01561Q8N1V8 128 aa11.78□□□□□ -0.52
SMARCD3-212ENST00000485610 MALP21145 153 aa11.77□□□□□ -0.52
SMARCD3-212ENST00000485610 PYY3Q5JQD4 70 aa11.77□□□□□ -0.52
SMARCD3-212ENST00000485610 TMEM223A0PJW6 202 aa11.76□□□□□ -0.53
SMARCD3-212ENST00000485610 SMIM1B2RUZ4 78 aa11.76□□□□□ -0.53
SMARCD3-212ENST00000485610 SPINK8P0C7L1 97 aa11.76□□□□□ -0.53
SMARCD3-212ENST00000485610 APOMO95445 188 aa11.75□□□□□ -0.53
SMARCD3-212ENST00000485610 HERVK_113P61574 105 aa11.75□□□□□ -0.53
SMARCD3-212ENST00000485610 MAPKAPK5-AS1Q8N8E1 139 aa11.75□□□□□ -0.53
SMARCD3-212ENST00000485610 IGHV1-58A0A0C4DH39 117 aa11.74□□□□□ -0.53
SMARCD3-212ENST00000485610 CFAP161Q6P656 301 aa11.73□□□□□ -0.53
SMARCD3-212ENST00000485610 SACSQ9NZJ4 4579 aa11.72□□□□□ -0.53
SMARCD3-212ENST00000485610 IGHV3-64A0A075B6Q5 118 aa11.72□□□□□ -0.53
SMARCD3-212ENST00000485610 IGLV5-39A0A0G2JS06 123 aa11.72□□□□□ -0.53
SMARCD3-212ENST00000485610 STPG4Q8N801 248 aa11.72□□□□□ -0.53
SMARCD3-212ENST00000485610 C15orf56Q8N910 161 aa11.72□□□□□ -0.53
SMARCD3-212ENST00000485610 ORAOV1Q8WV07 137 aa11.72□□□□□ -0.53
SMARCD3-212ENST00000485610 hDV102S1A0JD36 115 aa11.71□□□□□ -0.53
SMARCD3-212ENST00000485610 HSBP1L1C9JCN9 74 aa11.71□□□□□ -0.53
SMARCD3-212ENST00000485610 USP17L23D6RBM5 183 aa11.71□□□□□ -0.53
SMARCD3-212ENST00000485610 SMIM6P0DI80 62 aa11.71□□□□□ -0.53
SMARCD3-212ENST00000485610 E9PLD3 99 aa11.7□□□□□ -0.54
SMARCD3-212ENST00000485610 SPAG11BQ08648 103 aa11.7□□□□□ -0.54
SMARCD3-212ENST00000485610 GVQW2A0A096LPI5 108 aaPredicted RBP11.69□□□□□ -0.54
SMARCD3-212ENST00000485610 MAJINQ3KP22 176 aa11.69□□□□□ -0.54
SMARCD3-212ENST00000485610 COX7B2Q8TF08 81 aa11.69□□□□□ -0.54
SMARCD3-212ENST00000485610 PLEKHB2Q96CS7 222 aa11.69□□□□□ -0.54
SMARCD3-212ENST00000485610 VAMP8Q9BV40 100 aa11.69□□□□□ -0.54
SMARCD3-212ENST00000485610 TOMM7Q9P0U1 55 aa11.69□□□□□ -0.54
SMARCD3-212ENST00000485610 LRCOL1A6NCL2 159 aa11.68□□□□□ -0.54
SMARCD3-212ENST00000485610 LECT2O14960 151 aa11.68□□□□□ -0.54
SMARCD3-212ENST00000485610 LEPROTO15243 131 aa11.68□□□□□ -0.54
SMARCD3-212ENST00000485610 RTL8CO15255 209 aa11.68□□□□□ -0.54
SMARCD3-212ENST00000485610 PRSS2P07478 247 aa11.68□□□□□ -0.54
SMARCD3-212ENST00000485610 WFDC2Q14508 124 aa11.68□□□□□ -0.54
SMARCD3-212ENST00000485610 HIGD2BQ4VC39 106 aa11.68□□□□□ -0.54
SMARCD3-212ENST00000485610 C14orf177Q52M58 125 aa11.68□□□□□ -0.54
SMARCD3-212ENST00000485610 ANKRD39Q53RE8 183 aa11.68□□□□□ -0.54
SMARCD3-212ENST00000485610 CDPF1Q6NVV7 123 aa11.68□□□□□ -0.54
SMARCD3-212ENST00000485610 Q8IZM0 81 aa11.68□□□□□ -0.54
SMARCD3-212ENST00000485610 HYDINQ4G0P3 5121 aa11.68□□□□□ -0.54
SMARCD3-212ENST00000485610 ZNF561-AS1K7EIQ3 104 aa11.66□□□□□ -0.54
SMARCD3-212ENST00000485610 DNAH10Q8IVF4 4471 aa11.65□□□□□ -0.54
SMARCD3-212ENST00000485610 KIAA0087Q14695 138 aa11.65□□□□□ -0.54
SMARCD3-212ENST00000485610 PAM16Q9Y3D7 125 aa11.65□□□□□ -0.54
SMARCD3-212ENST00000485610 A0A087WTM6 91 aa11.64□□□□□ -0.55
SMARCD3-212ENST00000485610 IGKV2D-26A0A0A0MRZ7 120 aa11.64□□□□□ -0.55
SMARCD3-212ENST00000485610 J3QQQ9 107 aa11.64□□□□□ -0.55
SMARCD3-212ENST00000485610 LGALS3P17931 250 aaKnown RBP11.64□□□□□ -0.55
SMARCD3-212ENST00000485610 TSPEAR-AS2P59090 65 aa11.64□□□□□ -0.55
SMARCD3-212ENST00000485610 CXCL5P42830 114 aa11.63□□□□□ -0.55
SMARCD3-212ENST00000485610 NMUP48645 174 aa11.63□□□□□ -0.55
SMARCD3-212ENST00000485610 S100A12P80511 92 aa11.63□□□□□ -0.55
SMARCD3-212ENST00000485610 C6orf226Q5I0X4 101 aa11.63□□□□□ -0.55
SMARCD3-212ENST00000485610 KMT2CQ8NEZ4 4911 aaKnown RBP11.63□□□□□ -0.55
SMARCD3-212ENST00000485610 SPATA45Q537H7 98 aa11.63□□□□□ -0.55
SMARCD3-212ENST00000485610 NTN5Q8WTR8 489 aaPredicted RBP11.63□□□□□ -0.55
SMARCD3-212ENST00000485610 LINC00526Q96FQ7 95 aa11.63□□□□□ -0.55
SMARCD3-212ENST00000485610 C2orf48Q96LS8 159 aa11.63□□□□□ -0.55
SMARCD3-212ENST00000485610 FRAS1Q86XX4 4008 aa11.62□□□□□ -0.55
SMARCD3-212ENST00000485610 F8WDY8 70 aa11.62□□□□□ -0.55
SMARCD3-212ENST00000485610 CKS1BP61024 79 aa11.62□□□□□ -0.55
SMARCD3-212ENST00000485610 RYR2Q92736 4967 aa11.61□□□□□ -0.55
SMARCD3-212ENST00000485610 DNAH2Q9P225 4427 aa11.61□□□□□ -0.55
SMARCD3-212ENST00000485610 TNP2Q05952 138 aa11.61□□□□□ -0.55
SMARCD3-212ENST00000485610 SFTA2Q6UW10 78 aa11.61□□□□□ -0.55
SMARCD3-212ENST00000485610 NDUFA12Q9UI09 145 aa11.61□□□□□ -0.55
SMARCD3-212ENST00000485610 EREGO14944 169 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms