RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 NDUFC2-KCTD14E9PQ53 114 aa4.4□□□□□ -1.71
USP54-213ENST00000481991 M0R2T5 61 aa4.4□□□□□ -1.71
USP54-213ENST00000481991 BCE1O60756 84 aa4.4□□□□□ -1.71
USP54-213ENST00000481991 C2orf82Q6UX34 121 aa4.4□□□□□ -1.71
USP54-213ENST00000481991 Q6ZUT4 128 aa4.4□□□□□ -1.71
USP54-213ENST00000481991 GNG13Q9P2W3 67 aa4.4□□□□□ -1.71
USP54-213ENST00000481991 MUC17Q685J3 4493 aa4.39□□□□□ -1.71
USP54-213ENST00000481991 GAGE10A6NGK3 116 aa4.39□□□□□ -1.71
USP54-213ENST00000481991 VCYO14598 125 aa4.39□□□□□ -1.71
USP54-213ENST00000481991 UPK1BO75841 260 aa4.39□□□□□ -1.71
USP54-213ENST00000481991 CFC1BP0CG36 223 aa4.39□□□□□ -1.71
USP54-213ENST00000481991 CTRLP40313 264 aa4.39□□□□□ -1.71
USP54-213ENST00000481991 TMEM18Q96B42 140 aa4.39□□□□□ -1.71
USP54-213ENST00000481991 XAGE1AQ9HD64 81 aa4.39□□□□□ -1.71
USP54-213ENST00000481991 BIN3Q9NQY0 253 aa4.39□□□□□ -1.71
USP54-213ENST00000481991 UBE2D4Q9Y2X8 147 aa4.39□□□□□ -1.71
USP54-213ENST00000481991 TRBV6-5A0A0K0K1A5 114 aa4.38□□□□□ -1.71
USP54-213ENST00000481991 ZNF727A8MUV8 499 aa4.38□□□□□ -1.71
USP54-213ENST00000481991 H2AFB1P0C5Y9 115 aa4.38□□□□□ -1.71
USP54-213ENST00000481991 MBD3L1Q8WWY6 194 aa4.38□□□□□ -1.71
USP54-213ENST00000481991 S100ZQ8WXG8 99 aa4.38□□□□□ -1.71
USP54-213ENST00000481991 BORCS7Q96B45 105 aa4.38□□□□□ -1.71
USP54-213ENST00000481991 KIR2DL4Q99706 377 aa4.38□□□□□ -1.71
USP54-213ENST00000481991 MED9Q9NWA0 146 aa4.38□□□□□ -1.71
USP54-213ENST00000481991 TGIF2-C20orf24A0A0A6YYL0 155 aa4.37□□□□□ -1.71
USP54-213ENST00000481991 TRBV30A0A0K0K1B3 111 aa4.37□□□□□ -1.71
USP54-213ENST00000481991 SMKR1H3BMG3 65 aa4.37□□□□□ -1.71
USP54-213ENST00000481991 PRSS2P07478 247 aa4.37□□□□□ -1.71
USP54-213ENST00000481991 POLR2KP53803 58 aaKnown RBP4.37□□□□□ -1.71
USP54-213ENST00000481991 CKS1BP61024 79 aa4.37□□□□□ -1.71
USP54-213ENST00000481991 CCL20P78556 96 aa4.37□□□□□ -1.71
USP54-213ENST00000481991 IFITM3Q01628 133 aa4.37□□□□□ -1.71
USP54-213ENST00000481991 MRPL55Q7Z7F7 128 aaKnown RBP4.37□□□□□ -1.71
USP54-213ENST00000481991 TOMM7Q9P0U1 55 aa4.37□□□□□ -1.71
USP54-213ENST00000481991 CSDC2Q9Y534 153 aaKnown RBP4.37□□□□□ -1.71
USP54-213ENST00000481991 TRBV20OR9-2A0A075B6H5 130 aa4.36□□□□□ -1.71
USP54-213ENST00000481991 IGHV3OR16-9A0A0B4J2B5 98 aa4.36□□□□□ -1.71
USP54-213ENST00000481991 TRBV27A0A0K0K1C4 114 aa4.36□□□□□ -1.71
USP54-213ENST00000481991 A0A1B0GVG6 124 aa4.36□□□□□ -1.71
USP54-213ENST00000481991 IFITM10A6NMD0 228 aa4.36□□□□□ -1.71
USP54-213ENST00000481991 FAM229BQ4G0N7 80 aa4.36□□□□□ -1.71
USP54-213ENST00000481991 ARPC5O15511 151 aa4.35□□□□□ -1.71
USP54-213ENST00000481991 HBBP68871 147 aa4.35□□□□□ -1.71
USP54-213ENST00000481991 MT1HP80294 61 aa4.35□□□□□ -1.71
USP54-213ENST00000481991 KRTAP13-3Q3SY46 172 aa4.35□□□□□ -1.71
USP54-213ENST00000481991 C6orf226Q5I0X4 101 aa4.35□□□□□ -1.71
USP54-213ENST00000481991 FP248Q71RG6 208 aaPredicted RBP4.35□□□□□ -1.71
USP54-213ENST00000481991 KRTAP19-1Q8IUB9 90 aa4.35□□□□□ -1.71
USP54-213ENST00000481991 C3orf22Q8N5N4 141 aa4.35□□□□□ -1.71
USP54-213ENST00000481991 LINC00167Q96N53 147 aa4.35□□□□□ -1.71
USP54-213ENST00000481991 KRTAP9-9Q9BYP9 154 aa4.35□□□□□ -1.71
USP54-213ENST00000481991 KRTAP9-4Q9BYQ2 154 aa4.35□□□□□ -1.71
USP54-213ENST00000481991 UMAD1C9J7I0 102 aa4.34□□□□□ -1.71
USP54-213ENST00000481991 GATCO43716 136 aaKnown RBP4.34□□□□□ -1.71
USP54-213ENST00000481991 RAB4AP20338 218 aa4.34□□□□□ -1.71
USP54-213ENST00000481991 RPL39P62891 51 aaKnown RBP4.34□□□□□ -1.71
USP54-213ENST00000481991 RPL32P62910 135 aaKnown RBP4.34□□□□□ -1.71
USP54-213ENST00000481991 KIAA0087Q14695 138 aa4.34□□□□□ -1.71
USP54-213ENST00000481991 SPAG11AQ6PDA7 123 aa4.34□□□□□ -1.71
USP54-213ENST00000481991 AMN1Q8IY45 258 aa4.34□□□□□ -1.71
USP54-213ENST00000481991 DAND5Q8N907 189 aa4.34□□□□□ -1.71
USP54-213ENST00000481991 SMIM12Q96EX1 92 aa4.34□□□□□ -1.71
USP54-213ENST00000481991 CNFNQ9BYD5 112 aa4.34□□□□□ -1.71
USP54-213ENST00000481991 MANBALQ9NQG1 85 aa4.34□□□□□ -1.71
USP54-213ENST00000481991 EIF4EBP3O60516 100 aaPredicted RBP4.33□□□□□ -1.72
USP54-213ENST00000481991 KRTAP10-6P60371 365 aaPredicted RBP4.33□□□□□ -1.72
USP54-213ENST00000481991 OCC1Q8TAD7 63 aa4.33□□□□□ -1.72
USP54-213ENST00000481991 C11orf52Q96A22 123 aa4.33□□□□□ -1.72
USP54-213ENST00000481991 TIMM21Q9BVV7 248 aa4.33□□□□□ -1.72
USP54-213ENST00000481991 IGKV2-28A0A075B6P5 120 aa4.32□□□□□ -1.72
USP54-213ENST00000481991 A8MWL6 223 aa4.32□□□□□ -1.72
USP54-213ENST00000481991 PDE6DO43924 150 aa4.32□□□□□ -1.72
USP54-213ENST00000481991 IGKV2D-28P01615 120 aa4.32□□□□□ -1.72
USP54-213ENST00000481991 GIPP09681 153 aaPredicted RBP4.32□□□□□ -1.72
USP54-213ENST00000481991 SUMO2P61956 95 aaKnown RBP4.32□□□□□ -1.72
USP54-213ENST00000481991 CTAG1AP78358 180 aa4.32□□□□□ -1.72
USP54-213ENST00000481991 PRLHP81277 87 aa4.32□□□□□ -1.72
USP54-213ENST00000481991 FAM19A1Q7Z5A9 133 aa4.32□□□□□ -1.72
USP54-213ENST00000481991 NKAPP1Q8N9T2 125 aa4.32□□□□□ -1.72
USP54-213ENST00000481991 TEX46H3BTG2 121 aa4.31□□□□□ -1.72
USP54-213ENST00000481991 PPP1R17O96001 155 aa4.31□□□□□ -1.72
USP54-213ENST00000481991 PNRC1Q12796 327 aaPredicted RBP4.31□□□□□ -1.72
USP54-213ENST00000481991 ALKBH7Q9BT30 221 aaPredicted RBP4.31□□□□□ -1.72
USP54-213ENST00000481991 TMEM191AQ9H0A3 160 aa4.31□□□□□ -1.72
USP54-213ENST00000481991 NDUFA13Q9P0J0 144 aa4.31□□□□□ -1.72
USP54-213ENST00000481991 TP73-AS1Q9UF72 201 aa4.31□□□□□ -1.72
USP54-213ENST00000481991 NDUFA12Q9UI09 145 aa4.31□□□□□ -1.72
USP54-213ENST00000481991 IGLV8-61A0A075B6I0 122 aa4.3□□□□□ -1.72
USP54-213ENST00000481991 A0A1B0GUT8 65 aa4.3□□□□□ -1.72
USP54-213ENST00000481991 K7EN84 100 aa4.3□□□□□ -1.72
USP54-213ENST00000481991 RAB5BP61020 215 aa4.3□□□□□ -1.72
USP54-213ENST00000481991 SPANXA1Q9NS26 97 aa4.3□□□□□ -1.72
USP54-213ENST00000481991 PPP1R2P9O14990 202 aa4.29□□□□□ -1.72
USP54-213ENST00000481991 TCAPO15273 167 aa4.29□□□□□ -1.72
USP54-213ENST00000481991 CEBPGP53567 150 aa4.29□□□□□ -1.72
USP54-213ENST00000481991 Q6ZN92 141 aa4.29□□□□□ -1.72
USP54-213ENST00000481991 CBLN2Q8IUK8 224 aa4.29□□□□□ -1.72
USP54-213ENST00000481991 Q8NBF4 154 aa4.29□□□□□ -1.72
USP54-213ENST00000481991 KRTAP4-8A0A0G2JLE6 195 aa4.28□□□□□ -1.72
USP54-213ENST00000481991 HIGD1CA8MV81 97 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms