RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 IGHV3OR16-9A0A0B4J2B5 98 aa5.54□□□□□ -1.52
SYNE1-225ENST00000481502 H3BRM9 83 aa5.54□□□□□ -1.52
SYNE1-225ENST00000481502 DPM2O94777 84 aa5.54□□□□□ -1.52
SYNE1-225ENST00000481502 KRTDAPP60985 99 aa5.54□□□□□ -1.52
SYNE1-225ENST00000481502 JOSD1Q15040 202 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-225ENST00000481502 CFAP161Q6P656 301 aa5.54□□□□□ -1.52
SYNE1-225ENST00000481502 OR10D4PQ8NGN7 298 aa5.54□□□□□ -1.52
SYNE1-225ENST00000481502 CHCHD10Q8WYQ3 142 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-225ENST00000481502 MRPL35Q9NZE8 188 aaKnown RBP5.54□□□□□ -1.52
SYNE1-225ENST00000481502 PLECQ15149 4684 aaKnown RBP5.54□□□□□ -1.52
SYNE1-225ENST00000481502 IGLV4-69A0A075B6H9 119 aa5.53□□□□□ -1.52
SYNE1-225ENST00000481502 C11orf86A6NJI1 115 aa5.53□□□□□ -1.52
SYNE1-225ENST00000481502 F8WDY8 70 aa5.53□□□□□ -1.52
SYNE1-225ENST00000481502 APOMO95445 188 aa5.53□□□□□ -1.52
SYNE1-225ENST00000481502 IGKCP01834 107 aa5.53□□□□□ -1.52
SYNE1-225ENST00000481502 A0A0J9YXV3 536 aa5.52□□□□□ -1.53
SYNE1-225ENST00000481502 COX7A2LO14548 114 aa5.52□□□□□ -1.53
SYNE1-225ENST00000481502 KRTAP26-1Q6PEX3 210 aa5.52□□□□□ -1.53
SYNE1-225ENST00000481502 SFTA2Q6UW10 78 aa5.52□□□□□ -1.53
SYNE1-225ENST00000481502 C6orf223Q8N319 242 aa5.52□□□□□ -1.53
SYNE1-225ENST00000481502 Q8N3U1 123 aa5.52□□□□□ -1.53
SYNE1-225ENST00000481502 CHAC1Q9BUX1 264 aa5.52□□□□□ -1.53
SYNE1-225ENST00000481502 KRTAP4-8Q9BYQ9 185 aa5.52□□□□□ -1.53
SYNE1-225ENST00000481502 IGKV2D-24A0A075B6R9 120 aa5.51□□□□□ -1.53
SYNE1-225ENST00000481502 HERVK_113P61574 105 aa5.51□□□□□ -1.53
SYNE1-225ENST00000481502 FOXI1Q12951 378 aa5.51□□□□□ -1.53
SYNE1-225ENST00000481502 C14orf177Q52M58 125 aa5.51□□□□□ -1.53
SYNE1-225ENST00000481502 RNASE13Q5GAN3 156 aaKnown RBP5.51□□□□□ -1.53
SYNE1-225ENST00000481502 KRTAP1-5Q9BYS1 174 aa5.51□□□□□ -1.53
SYNE1-225ENST00000481502 IGHV1-58A0A0C4DH39 117 aa5.5□□□□□ -1.53
SYNE1-225ENST00000481502 IGKV3OR2-268A0A0C4DH90 116 aa5.5□□□□□ -1.53
SYNE1-225ENST00000481502 GAGE12HA6NDE8 117 aa5.5□□□□□ -1.53
SYNE1-225ENST00000481502 H0Y8G0 127 aa5.5□□□□□ -1.53
SYNE1-225ENST00000481502 SCGB1D1O95968 90 aa5.5□□□□□ -1.53
SYNE1-225ENST00000481502 ZNF22P17026 224 aaPredicted RBP5.5□□□□□ -1.53
SYNE1-225ENST00000481502 MALP21145 153 aa5.5□□□□□ -1.53
SYNE1-225ENST00000481502 XCL1P47992 114 aa5.5□□□□□ -1.53
SYNE1-225ENST00000481502 COX6A2Q02221 97 aa5.5□□□□□ -1.53
SYNE1-225ENST00000481502 TMEM170BQ5T4T1 132 aa5.5□□□□□ -1.53
SYNE1-225ENST00000481502 C1orf134Q5TEV5 83 aa5.5□□□□□ -1.53
SYNE1-225ENST00000481502 Q6ZRN7 208 aaPredicted RBP5.5□□□□□ -1.53
SYNE1-225ENST00000481502 LINC00469Q8N7U9 141 aa5.5□□□□□ -1.53
SYNE1-225ENST00000481502 CDKN2A-AS1Q9UH64 79 aa5.5□□□□□ -1.53
SYNE1-225ENST00000481502 IGHV3-64A0A075B6Q5 118 aa5.49□□□□□ -1.53
SYNE1-225ENST00000481502 IGLV5-39A0A0G2JS06 123 aa5.49□□□□□ -1.53
SYNE1-225ENST00000481502 LOC105371267A0A1B0GV96 52 aa5.49□□□□□ -1.53
SYNE1-225ENST00000481502 TMEM223A0PJW6 202 aa5.49□□□□□ -1.53
SYNE1-225ENST00000481502 HSBP1L1C9JCN9 74 aa5.49□□□□□ -1.53
SYNE1-225ENST00000481502 PSCAO43653 123 aa5.49□□□□□ -1.53
SYNE1-225ENST00000481502 CXCL5P42830 114 aa5.49□□□□□ -1.53
SYNE1-225ENST00000481502 ZC2HC1BQ5TFG8 222 aa5.49□□□□□ -1.53
SYNE1-225ENST00000481502 CLPSL2Q6UWE3 100 aa5.49□□□□□ -1.53
SYNE1-225ENST00000481502 Q8IZM0 81 aa5.49□□□□□ -1.53
SYNE1-225ENST00000481502 Q9HAA7 133 aa5.49□□□□□ -1.53
SYNE1-225ENST00000481502 IGLV10-54A0A075B6I4 117 aa5.48□□□□□ -1.53
SYNE1-225ENST00000481502 SMIM1B2RUZ4 78 aa5.48□□□□□ -1.53
SYNE1-225ENST00000481502 E9PLD3 99 aa5.48□□□□□ -1.53
SYNE1-225ENST00000481502 SMIM6P0DI80 62 aa5.48□□□□□ -1.53
SYNE1-225ENST00000481502 PYY3Q5JQD4 70 aa5.48□□□□□ -1.53
SYNE1-225ENST00000481502 PLEKHB2Q96CS7 222 aa5.48□□□□□ -1.53
SYNE1-225ENST00000481502 C2orf48Q96LS8 159 aa5.48□□□□□ -1.53
SYNE1-225ENST00000481502 GVQW2A0A096LPI5 108 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-225ENST00000481502 NMUP48645 174 aa5.47□□□□□ -1.53
SYNE1-225ENST00000481502 S100A12P80511 92 aa5.47□□□□□ -1.53
SYNE1-225ENST00000481502 LINC00336Q6ZUF6 198 aa5.47□□□□□ -1.53
SYNE1-225ENST00000481502 C5orf38Q86SI9 138 aa5.47□□□□□ -1.53
SYNE1-225ENST00000481502 LINC00587B1AMM8 73 aa5.46□□□□□ -1.54
SYNE1-225ENST00000481502 M0R2N4 97 aa5.46□□□□□ -1.54
SYNE1-225ENST00000481502 EREGO14944 169 aa5.46□□□□□ -1.54
SYNE1-225ENST00000481502 LEPROTO15243 131 aa5.46□□□□□ -1.54
SYNE1-225ENST00000481502 PMCHL2Q9BQD1 86 aa5.46□□□□□ -1.54
SYNE1-225ENST00000481502 PKIGQ9Y2B9 76 aa5.46□□□□□ -1.54
SYNE1-225ENST00000481502 VPS13DQ5THJ4 4388 aa5.46□□□□□ -1.54
SYNE1-225ENST00000481502 LYSTQ99698 3801 aa5.45□□□□□ -1.54
SYNE1-225ENST00000481502 ALMS1Q8TCU4 4167 aa5.45□□□□□ -1.54
SYNE1-225ENST00000481502 LRCOL1A6NCL2 159 aa5.45□□□□□ -1.54
SYNE1-225ENST00000481502 ZNF561-AS1K7EIQ3 104 aa5.45□□□□□ -1.54
SYNE1-225ENST00000481502 PRSS2P07478 247 aa5.45□□□□□ -1.54
SYNE1-225ENST00000481502 HERV-K104P63124 156 aa5.45□□□□□ -1.54
SYNE1-225ENST00000481502 KIAA0087Q14695 138 aa5.45□□□□□ -1.54
SYNE1-225ENST00000481502 RNF151Q2KHN1 245 aa5.45□□□□□ -1.54
SYNE1-225ENST00000481502 C6orf226Q5I0X4 101 aa5.45□□□□□ -1.54
SYNE1-225ENST00000481502 MAPKAPK5-AS1Q8N8E1 139 aa5.45□□□□□ -1.54
SYNE1-225ENST00000481502 COX7B2Q8TF08 81 aa5.45□□□□□ -1.54
SYNE1-225ENST00000481502 NTN5Q8WTR8 489 aaPredicted RBP5.45□□□□□ -1.54
SYNE1-225ENST00000481502 TRBV30A0A0K0K1B3 111 aa5.44□□□□□ -1.54
SYNE1-225ENST00000481502 USP17L23D6RBM5 183 aa5.44□□□□□ -1.54
SYNE1-225ENST00000481502 J3QQQ9 107 aa5.44□□□□□ -1.54
SYNE1-225ENST00000481502 DLEU1O43261 78 aa5.44□□□□□ -1.54
SYNE1-225ENST00000481502 SPINK8P0C7L1 97 aa5.44□□□□□ -1.54
SYNE1-225ENST00000481502 CNBPP62633 177 aaKnown RBP5.44□□□□□ -1.54
SYNE1-225ENST00000481502 C15orf56Q8N910 161 aa5.44□□□□□ -1.54
SYNE1-225ENST00000481502 ORAOV1Q8WV07 137 aa5.44□□□□□ -1.54
SYNE1-225ENST00000481502 VAMP8Q9BV40 100 aa5.44□□□□□ -1.54
SYNE1-225ENST00000481502 A0A087WTM6 91 aa5.43□□□□□ -1.54
SYNE1-225ENST00000481502 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.43□□□□□ -1.54
SYNE1-225ENST00000481502 MYMXA0A1B0GTQ4 84 aa5.43□□□□□ -1.54
SYNE1-225ENST00000481502 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.43□□□□□ -1.54
SYNE1-225ENST00000481502 NDUFA1O15239 70 aa5.43□□□□□ -1.54
SYNE1-225ENST00000481502 LGALS3P17931 250 aaKnown RBP5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms