RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 RNF185Q96GF1 192 aa3.91□□□□□ -1.78
VPS50-215ENST00000480943 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.9□□□□□ -1.79
VPS50-215ENST00000480943 TRBV6-5A0A0K0K1A5 114 aa3.9□□□□□ -1.79
VPS50-215ENST00000480943 FAM231BA6NCW3 169 aa3.9□□□□□ -1.79
VPS50-215ENST00000480943 C9JQL5 133 aa3.9□□□□□ -1.79
VPS50-215ENST00000480943 H7C423 109 aa3.9□□□□□ -1.79
VPS50-215ENST00000480943 PANO1I0J062 215 aa3.9□□□□□ -1.79
VPS50-215ENST00000480943 TSHBP01222 138 aa3.9□□□□□ -1.79
VPS50-215ENST00000480943 ZNF25P17030 456 aaPredicted RBP3.9□□□□□ -1.79
VPS50-215ENST00000480943 KRTAP10-4P60372 401 aaPredicted RBP3.9□□□□□ -1.79
VPS50-215ENST00000480943 RPL37AP61513 92 aaKnown RBP3.9□□□□□ -1.79
VPS50-215ENST00000480943 CNBPP62633 177 aaKnown RBP3.9□□□□□ -1.79
VPS50-215ENST00000480943 PEA15Q15121 130 aa3.9□□□□□ -1.79
VPS50-215ENST00000480943 FAM74A3Q4VXF1 159 aa3.9□□□□□ -1.79
VPS50-215ENST00000480943 NOTCH2NLQ7Z3S9 236 aa3.9□□□□□ -1.79
VPS50-215ENST00000480943 MRAP2Q96G30 205 aa3.9□□□□□ -1.79
VPS50-215ENST00000480943 TMEM101Q96IK0 257 aa3.9□□□□□ -1.79
VPS50-215ENST00000480943 BTF3L4Q96K17 158 aa3.9□□□□□ -1.79
VPS50-215ENST00000480943 NAT8Q9UHE5 227 aa3.9□□□□□ -1.79
VPS50-215ENST00000480943 NAT8BQ9UHF3 227 aa3.9□□□□□ -1.79
VPS50-215ENST00000480943 LRP1Q07954 4544 aaKnown RBP3.89□□□□□ -1.79
VPS50-215ENST00000480943 FAT3Q8TDW7 4589 aa3.89□□□□□ -1.79
VPS50-215ENST00000480943 IGHV3-64A0A075B6Q5 118 aa3.89□□□□□ -1.79
VPS50-215ENST00000480943 C7orf77A4D0Y5 90 aa3.89□□□□□ -1.79
VPS50-215ENST00000480943 CHTF8P0CG12 524 aa3.89□□□□□ -1.79
VPS50-215ENST00000480943 ESDP10768 282 aa3.89□□□□□ -1.79
VPS50-215ENST00000480943 FCER1GP30273 86 aa3.89□□□□□ -1.79
VPS50-215ENST00000480943 CAMPP49913 170 aa3.89□□□□□ -1.79
VPS50-215ENST00000480943 POLR2KP53803 58 aaKnown RBP3.89□□□□□ -1.79
VPS50-215ENST00000480943 SDIM1Q6ZPB5 146 aa3.89□□□□□ -1.79
VPS50-215ENST00000480943 OR5A1Q8NGJ0 315 aa3.89□□□□□ -1.79
VPS50-215ENST00000480943 TRBV27A0A0K0K1C4 114 aa3.88□□□□□ -1.79
VPS50-215ENST00000480943 LINC00959A0A1B0GUT2 108 aa3.88□□□□□ -1.79
VPS50-215ENST00000480943 SMIM27A0A1W2PRY6 76 aa3.88□□□□□ -1.79
VPS50-215ENST00000480943 CCL25O15444 150 aa3.88□□□□□ -1.79
VPS50-215ENST00000480943 XCL1P47992 114 aa3.88□□□□□ -1.79
VPS50-215ENST00000480943 MRPL51Q4U2R6 128 aaKnown RBP3.88□□□□□ -1.79
VPS50-215ENST00000480943 MRPL54Q6P161 138 aaKnown RBP3.88□□□□□ -1.79
VPS50-215ENST00000480943 IGKV2-24A0A0C4DH68 120 aa3.87□□□□□ -1.79
VPS50-215ENST00000480943 PPP1R2P9O14990 202 aa3.87□□□□□ -1.79
VPS50-215ENST00000480943 PPP1R17O96001 155 aa3.87□□□□□ -1.79
VPS50-215ENST00000480943 CIRBPQ14011 172 aaKnown RBP3.87□□□□□ -1.79
VPS50-215ENST00000480943 SS18Q15532 418 aa3.87□□□□□ -1.79
VPS50-215ENST00000480943 RNASE13Q5GAN3 156 aaKnown RBP3.87□□□□□ -1.79
VPS50-215ENST00000480943 FAM104BQ5XKR9 115 aa3.87□□□□□ -1.79
VPS50-215ENST00000480943 MRPL52Q86TS9 123 aaKnown RBP3.87□□□□□ -1.79
VPS50-215ENST00000480943 SPACA4Q8TDM5 124 aa3.87□□□□□ -1.79
VPS50-215ENST00000480943 LINC00526Q96FQ7 95 aa3.87□□□□□ -1.79
VPS50-215ENST00000480943 DPH3Q96FX2 82 aa3.87□□□□□ -1.79
VPS50-215ENST00000480943 SMDT1Q9H4I9 107 aa3.87□□□□□ -1.79
VPS50-215ENST00000480943 CDC42SE2Q9NRR3 84 aa3.87□□□□□ -1.79
VPS50-215ENST00000480943 GVQW2A0A096LPI5 108 aaPredicted RBP3.86□□□□□ -1.79
VPS50-215ENST00000480943 IGHV1-58A0A0C4DH39 117 aa3.86□□□□□ -1.79
VPS50-215ENST00000480943 A0A1B0GW15 77 aa3.86□□□□□ -1.79
VPS50-215ENST00000480943 LINC00862A6NCI5 91 aa3.86□□□□□ -1.79
VPS50-215ENST00000480943 D6R8Y8 96 aa3.86□□□□□ -1.79
VPS50-215ENST00000480943 S100A8P05109 93 aa3.86□□□□□ -1.79
VPS50-215ENST00000480943 CKS2P33552 79 aa3.86□□□□□ -1.79
VPS50-215ENST00000480943 HNRNPA3P51991 378 aaKnown RBP3.86□□□□□ -1.79
VPS50-215ENST00000480943 HBBP68871 147 aa3.86□□□□□ -1.79
VPS50-215ENST00000480943 COX6A2Q02221 97 aa3.86□□□□□ -1.79
VPS50-215ENST00000480943 ZNF664Q8N3J9 261 aa3.86□□□□□ -1.79
VPS50-215ENST00000480943 KIR2DL4Q99706 377 aa3.86□□□□□ -1.79
VPS50-215ENST00000480943 UBE2D4Q9Y2X8 147 aa3.86□□□□□ -1.79
VPS50-215ENST00000480943 A0A096LNI7 61 aa3.85□□□□□ -1.79
VPS50-215ENST00000480943 TRAV13-1A0A0B4J241 112 aa3.85□□□□□ -1.79
VPS50-215ENST00000480943 A0A1B0GXF2 115 aa3.85□□□□□ -1.79
VPS50-215ENST00000480943 NPYP01303 97 aa3.85□□□□□ -1.79
VPS50-215ENST00000480943 KRTAP10-8P60410 259 aa3.85□□□□□ -1.79
VPS50-215ENST00000480943 RPL39P62891 51 aaKnown RBP3.85□□□□□ -1.79
VPS50-215ENST00000480943 SMAGPQ0VAQ4 97 aa3.85□□□□□ -1.79
VPS50-215ENST00000480943 MAJINQ3KP22 176 aa3.85□□□□□ -1.79
VPS50-215ENST00000480943 CD164L2Q6UWJ8 174 aa3.85□□□□□ -1.79
VPS50-215ENST00000480943 Q6ZUT4 128 aa3.85□□□□□ -1.79
VPS50-215ENST00000480943 CARD19Q96LW7 228 aa3.85□□□□□ -1.79
VPS50-215ENST00000480943 C20orf78Q9BR46 151 aa3.85□□□□□ -1.79
VPS50-215ENST00000480943 SMIM2Q9BVW6 85 aa3.85□□□□□ -1.79
VPS50-215ENST00000480943 TRBV24-1A0A075B6N3 115 aa3.84□□□□□ -1.79
VPS50-215ENST00000480943 C1orf196B1AJZ1 125 aa3.84□□□□□ -1.79
VPS50-215ENST00000480943 F8W036 122 aa3.84□□□□□ -1.79
VPS50-215ENST00000480943 COX7A2LO14548 114 aa3.84□□□□□ -1.79
VPS50-215ENST00000480943 PHOX2AO14813 284 aa3.84□□□□□ -1.79
VPS50-215ENST00000480943 TCAPO15273 167 aa3.84□□□□□ -1.79
VPS50-215ENST00000480943 OXTP01178 125 aa3.84□□□□□ -1.79
VPS50-215ENST00000480943 RAB14P61106 215 aa3.84□□□□□ -1.79
VPS50-215ENST00000480943 RPL32P62910 135 aaKnown RBP3.84□□□□□ -1.79
VPS50-215ENST00000480943 KIAA1644Q3SXP7 199 aa3.84□□□□□ -1.79
VPS50-215ENST00000480943 PLAC8Q9NZF1 115 aa3.84□□□□□ -1.79
VPS50-215ENST00000480943 CSDC2Q9Y534 153 aaKnown RBP3.84□□□□□ -1.79
VPS50-215ENST00000480943 IGLV4-69A0A075B6H9 119 aa3.83□□□□□ -1.8
VPS50-215ENST00000480943 SYCNQ0VAF6 134 aa3.83□□□□□ -1.8
VPS50-215ENST00000480943 PNRC1Q12796 327 aaPredicted RBP3.83□□□□□ -1.8
VPS50-215ENST00000480943 Q6ZRU5 148 aa3.83□□□□□ -1.8
VPS50-215ENST00000480943 ATP5L2Q7Z4Y8 100 aa3.83□□□□□ -1.8
VPS50-215ENST00000480943 C5orf38Q86SI9 138 aa3.83□□□□□ -1.8
VPS50-215ENST00000480943 C7orf33Q8WU49 177 aa3.83□□□□□ -1.8
VPS50-215ENST00000480943 PRELID3AQ96N28 172 aa3.83□□□□□ -1.8
VPS50-215ENST00000480943 OPRPNQ99935 248 aaPredicted RBP3.83□□□□□ -1.8
VPS50-215ENST00000480943 TIMM21Q9BVV7 248 aa3.83□□□□□ -1.8
VPS50-215ENST00000480943 APOMO95445 188 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms