RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 LOC400499M0QZD8 3231 aa9.92□□□□□ -0.82
USP42-206ENST00000479544 A6NDX4 124 aa9.91□□□□□ -0.82
USP42-206ENST00000479544 ODF3Q96PU9 254 aa9.91□□□□□ -0.82
USP42-206ENST00000479544 DCHS1Q96JQ0 3298 aa9.91□□□□□ -0.82
USP42-206ENST00000479544 DEFB4AO15263 64 aa9.91□□□□□ -0.82
USP42-206ENST00000479544 Q9UF83 564 aa9.91□□□□□ -0.82
USP42-206ENST00000479544 VPREB3Q9UKI3 123 aa9.91□□□□□ -0.82
USP42-206ENST00000479544 F5H768 121 aa9.9□□□□□ -0.82
USP42-206ENST00000479544 SCXQ7RTU7 201 aa9.9□□□□□ -0.82
USP42-206ENST00000479544 C11orf71Q6IPW1 123 aa9.9□□□□□ -0.82
USP42-206ENST00000479544 DCANP1Q8TF63 244 aa9.9□□□□□ -0.82
USP42-206ENST00000479544 A0A1W2PPR1 153 aa9.9□□□□□ -0.82
USP42-206ENST00000479544 PSMB8P28062 276 aa9.9□□□□□ -0.82
USP42-206ENST00000479544 ENHOQ6UWT2 76 aa9.9□□□□□ -0.83
USP42-206ENST00000479544 NDUFA1O15239 70 aa9.89□□□□□ -0.83
USP42-206ENST00000479544 GYPEP15421 78 aa9.89□□□□□ -0.83
USP42-206ENST00000479544 IGHV4-28A0A0C4DH34 117 aa9.89□□□□□ -0.83
USP42-206ENST00000479544 UBE2D4Q9Y2X8 147 aa9.89□□□□□ -0.83
USP42-206ENST00000479544 MRPS36P82909 103 aaKnown RBP9.88□□□□□ -0.83
USP42-206ENST00000479544 C18orf65Q6ZTR6 163 aa9.88□□□□□ -0.83
USP42-206ENST00000479544 DEFB105AQ8NG35 78 aa9.88□□□□□ -0.83
USP42-206ENST00000479544 SPANXCQ9NY87 97 aa9.88□□□□□ -0.83
USP42-206ENST00000479544 COX6A2Q02221 97 aa9.88□□□□□ -0.83
USP42-206ENST00000479544 C9orf85Q96MD7 179 aa9.88□□□□□ -0.83
USP42-206ENST00000479544 GCN1Q92616 2671 aaKnown RBP9.88□□□□□ -0.83
USP42-206ENST00000479544 USP17L23D6RBM5 183 aa9.87□□□□□ -0.83
USP42-206ENST00000479544 MAP6D1Q9H9H5 199 aa9.87□□□□□ -0.83
USP42-206ENST00000479544 LOC100131303A0A0U1RQF7 123 aa9.87□□□□□ -0.83
USP42-206ENST00000479544 Q96MF0 132 aa9.87□□□□□ -0.83
USP42-206ENST00000479544 ZZEF1O43149 2961 aa9.86□□□□□ -0.83
USP42-206ENST00000479544 SPANXDQ9BXN6 97 aa9.86□□□□□ -0.83
USP42-206ENST00000479544 PYGO1Q9Y3Y4 419 aa9.86□□□□□ -0.83
USP42-206ENST00000479544 Q6ZSN1 163 aa9.86□□□□□ -0.83
USP42-206ENST00000479544 SVIPQ8NHG7 77 aa9.86□□□□□ -0.83
USP42-206ENST00000479544 COX7CP15954 63 aa9.85□□□□□ -0.83
USP42-206ENST00000479544 LINC00526Q96FQ7 95 aa9.85□□□□□ -0.83
USP42-206ENST00000479544 CCL24O00175 119 aa9.85□□□□□ -0.83
USP42-206ENST00000479544 KIF25-AS1Q9Y6Z4 181 aa9.85□□□□□ -0.83
USP42-206ENST00000479544 LINC00242Q5T6M2 205 aa9.85□□□□□ -0.83
USP42-206ENST00000479544 SMIM11BQ8TCY0 68 aa9.85□□□□□ -0.83
USP42-206ENST00000479544 Q6Q795 121 aa9.85□□□□□ -0.83
USP42-206ENST00000479544 LINC00315P59091 139 aa9.84□□□□□ -0.83
USP42-206ENST00000479544 Q8N2B8 174 aa9.84□□□□□ -0.83
USP42-206ENST00000479544 DPH3Q96FX2 82 aa9.84□□□□□ -0.83
USP42-206ENST00000479544 HRCT1Q6UXD1 115 aa9.84□□□□□ -0.83
USP42-206ENST00000479544 SNURFQ9Y675 71 aa9.83□□□□□ -0.84
USP42-206ENST00000479544 AVPP01185 164 aa9.83□□□□□ -0.84
USP42-206ENST00000479544 CXCL5P42830 114 aa9.83□□□□□ -0.84
USP42-206ENST00000479544 UPK3BQ9BT76 320 aa9.83□□□□□ -0.84
USP42-206ENST00000479544 PKIGQ9Y2B9 76 aa9.83□□□□□ -0.84
USP42-206ENST00000479544 ZNF561-AS1K7EIQ3 104 aa9.82□□□□□ -0.84
USP42-206ENST00000479544 PRR3P79522 188 aaKnown RBP9.82□□□□□ -0.84
USP42-206ENST00000479544 RPL18AQ02543 176 aaKnown RBP9.82□□□□□ -0.84
USP42-206ENST00000479544 WFDC10AQ9H1F0 79 aa9.82□□□□□ -0.84
USP42-206ENST00000479544 FAM19A5Q7Z5A7 132 aaPredicted RBP9.82□□□□□ -0.84
USP42-206ENST00000479544 LINC01546A6NGU7 62 aa9.82□□□□□ -0.84
USP42-206ENST00000479544 A0A0U1RQV1 116 aa9.81□□□□□ -0.84
USP42-206ENST00000479544 J3QLI3 93 aa9.81□□□□□ -0.84
USP42-206ENST00000479544 C5orf47Q569G3 176 aa9.81□□□□□ -0.84
USP42-206ENST00000479544 LINC00269Q8N2A0 174 aa9.81□□□□□ -0.84
USP42-206ENST00000479544 SERP2Q8N6R1 65 aa9.81□□□□□ -0.84
USP42-206ENST00000479544 IMUPQ9GZP8 106 aa9.81□□□□□ -0.84
USP42-206ENST00000479544 FAM110AQ9BQ89 295 aa9.8□□□□□ -0.84
USP42-206ENST00000479544 C6orf99Q4VX62 202 aa9.8□□□□□ -0.84
USP42-206ENST00000479544 BRK1Q8WUW1 75 aa9.8□□□□□ -0.84
USP42-206ENST00000479544 SETXQ7Z333 2677 aaKnown RBP9.8□□□□□ -0.84
USP42-206ENST00000479544 JMJD7-PLA2G4BH0Y9G9 81 aa9.8□□□□□ -0.84
USP42-206ENST00000479544 MPLKIPQ8TAP9 179 aa9.8□□□□□ -0.84
USP42-206ENST00000479544 A0A087WYN8 130 aa9.79□□□□□ -0.84
USP42-206ENST00000479544 NHLRC4P0CG21 123 aaPredicted RBP9.79□□□□□ -0.84
USP42-206ENST00000479544 FAM240AA0A1B0GVK7 77 aa9.79□□□□□ -0.84
USP42-206ENST00000479544 SMIM1B2RUZ4 78 aa9.79□□□□□ -0.84
USP42-206ENST00000479544 CCL18P55774 89 aa9.79□□□□□ -0.84
USP42-206ENST00000479544 CHCHD7Q9BUK0 85 aa9.79□□□□□ -0.84
USP42-206ENST00000479544 ASH1LQ9NR48 2969 aaKnown RBP9.79□□□□□ -0.84
USP42-206ENST00000479544 EIF4EBP3O60516 100 aaPredicted RBP9.79□□□□□ -0.84
USP42-206ENST00000479544 LRBAP50851 2863 aa9.78□□□□□ -0.84
USP42-206ENST00000479544 XAGE1AQ9HD64 81 aa9.78□□□□□ -0.84
USP42-206ENST00000479544 TRBV10-1A0A0K0K1A3 114 aa9.77□□□□□ -0.84
USP42-206ENST00000479544 TMEM256-PLSCR3K7ERE1 68 aa9.77□□□□□ -0.84
USP42-206ENST00000479544 AMELXQ99217 191 aa9.77□□□□□ -0.84
USP42-206ENST00000479544 CFAP46Q8IYW2 2715 aa9.77□□□□□ -0.85
USP42-206ENST00000479544 TIMM17BO60830 172 aa9.76□□□□□ -0.85
USP42-206ENST00000479544 DEFB114Q30KQ6 69 aa9.76□□□□□ -0.85
USP42-206ENST00000479544 SMIM9A6NGZ8 99 aa9.76□□□□□ -0.85
USP42-206ENST00000479544 CMC4P56277 68 aaPredicted RBP9.76□□□□□ -0.85
USP42-206ENST00000479544 KLK12Q9UKR0 248 aa9.76□□□□□ -0.85
USP42-206ENST00000479544 TEP1Q99973 2627 aaKnown RBP9.76□□□□□ -0.85
USP42-206ENST00000479544 LINC00846Q9NV44 126 aa9.76□□□□□ -0.85
USP42-206ENST00000479544 HILS1P60008 231 aa9.75□□□□□ -0.85
USP42-206ENST00000479544 ATRQ13535 2644 aa9.75□□□□□ -0.85
USP42-206ENST00000479544 ASPMQ8IZT6 3477 aa9.75□□□□□ -0.85
USP42-206ENST00000479544 IGLV1-40P01703 118 aa9.75□□□□□ -0.85
USP42-206ENST00000479544 FAM236DA0A1B0GTK5 79 aa9.74□□□□□ -0.85
USP42-206ENST00000479544 FAM236CP0DP71 79 aa9.74□□□□□ -0.85
USP42-206ENST00000479544 SBSPONQ8IVN8 264 aa9.74□□□□□ -0.85
USP42-206ENST00000479544 SPAG11BQ08648 103 aa9.74□□□□□ -0.85
USP42-206ENST00000479544 C16orf74Q96GX8 76 aa9.74□□□□□ -0.85
USP42-206ENST00000479544 CDC42SE2Q9NRR3 84 aa9.74□□□□□ -0.85
USP42-206ENST00000479544 CYSRT1A8MQ03 144 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 137.6 ms