RNA–Protein interactions for RNA: ENST00000478531.5

BRCA1-215, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-215ENST00000478531 CCL25O15444 150 aa4.53□□□□□ -1.68
BRCA1-215ENST00000478531 GCSHP23434 173 aa4.53□□□□□ -1.68
BRCA1-215ENST00000478531 HERV-K104P63124 156 aa4.53□□□□□ -1.68
BRCA1-215ENST00000478531 LINC01620Q4KN68 170 aa4.53□□□□□ -1.68
BRCA1-215ENST00000478531 C14orf177Q52M58 125 aa4.53□□□□□ -1.68
BRCA1-215ENST00000478531 OPRPNQ99935 248 aaPredicted RBP4.53□□□□□ -1.68
BRCA1-215ENST00000478531 SPANXA1Q9NS26 97 aa4.53□□□□□ -1.68
BRCA1-215ENST00000478531 hDV102S1A0JD36 115 aa4.52□□□□□ -1.69
BRCA1-215ENST00000478531 KRTAP10-1P60331 282 aa4.52□□□□□ -1.69
BRCA1-215ENST00000478531 SS18Q15532 418 aa4.52□□□□□ -1.69
BRCA1-215ENST00000478531 ORMDL2Q53FV1 153 aa4.52□□□□□ -1.69
BRCA1-215ENST00000478531 C2orf66Q6UXQ4 117 aa4.52□□□□□ -1.69
BRCA1-215ENST00000478531 PRSS3P2Q8NHM4 247 aa4.52□□□□□ -1.69
BRCA1-215ENST00000478531 TIMM21Q9BVV7 248 aa4.52□□□□□ -1.69
BRCA1-215ENST00000478531 CSDC2Q9Y534 153 aaKnown RBP4.52□□□□□ -1.69
BRCA1-215ENST00000478531 PRSS1P07477 247 aa4.51□□□□□ -1.69
BRCA1-215ENST00000478531 VAMP3Q15836 100 aa4.51□□□□□ -1.69
BRCA1-215ENST00000478531 SMCO4Q9NRQ5 59 aa4.51□□□□□ -1.69
BRCA1-215ENST00000478531 CYSLTR1Q9Y271 337 aa4.51□□□□□ -1.69
BRCA1-215ENST00000478531 IFITM10A6NMD0 228 aa4.51□□□□□ -1.69
BRCA1-215ENST00000478531 FOXI1Q12951 378 aa4.51□□□□□ -1.69
BRCA1-215ENST00000478531 HIGD2BQ4VC39 106 aa4.51□□□□□ -1.69
BRCA1-215ENST00000478531 FA2HQ7L5A8 372 aa4.51□□□□□ -1.69
BRCA1-215ENST00000478531 C15orf56Q8N910 161 aa4.51□□□□□ -1.69
BRCA1-215ENST00000478531 YPEL4Q96NS1 127 aa4.51□□□□□ -1.69
BRCA1-215ENST00000478531 IGLV4-3A0A075B6K6 122 aa4.5□□□□□ -1.69
BRCA1-215ENST00000478531 C1orf196B1AJZ1 125 aa4.5□□□□□ -1.69
BRCA1-215ENST00000478531 K7EMI3 77 aa4.5□□□□□ -1.69
BRCA1-215ENST00000478531 HAMPP81172 84 aa4.5□□□□□ -1.69
BRCA1-215ENST00000478531 FAM104AQ969W3 186 aa4.5□□□□□ -1.69
BRCA1-215ENST00000478531 TMEM141Q96I45 108 aa4.5□□□□□ -1.69
BRCA1-215ENST00000478531 SRRM2Q9UQ35 2752 aaKnown RBP4.49□□□□□ -1.69
BRCA1-215ENST00000478531 CDK2AP2O75956 126 aa4.49□□□□□ -1.69
BRCA1-215ENST00000478531 MRPS36P82909 103 aaKnown RBP4.49□□□□□ -1.69
BRCA1-215ENST00000478531 CD164L2Q6UWJ8 174 aa4.49□□□□□ -1.69
BRCA1-215ENST00000478531 Q6ZN92 141 aa4.49□□□□□ -1.69
BRCA1-215ENST00000478531 C2orf88Q9BSF0 95 aa4.49□□□□□ -1.69
BRCA1-215ENST00000478531 AP5S1Q9NUS5 200 aa4.49□□□□□ -1.69
BRCA1-215ENST00000478531 PYGO1Q9Y3Y4 419 aa4.49□□□□□ -1.69
BRCA1-215ENST00000478531 M0QXV9 152 aa4.49□□□□□ -1.69
BRCA1-215ENST00000478531 COX7A2LO14548 114 aa4.49□□□□□ -1.69
BRCA1-215ENST00000478531 ZC2HC1BQ5TFG8 222 aa4.49□□□□□ -1.69
BRCA1-215ENST00000478531 TEX43Q6ZNM6 134 aa4.49□□□□□ -1.69
BRCA1-215ENST00000478531 C18orf32Q8TCD1 76 aa4.49□□□□□ -1.69
BRCA1-215ENST00000478531 SMIM6P0DI80 62 aa4.48□□□□□ -1.69
BRCA1-215ENST00000478531 C5orf38Q86SI9 138 aa4.48□□□□□ -1.69
BRCA1-215ENST00000478531 TOMM6Q96B49 74 aa4.48□□□□□ -1.69
BRCA1-215ENST00000478531 LINC00526Q96FQ7 95 aa4.48□□□□□ -1.69
BRCA1-215ENST00000478531 VPS13BQ7Z7G8 4022 aa4.48□□□□□ -1.69
BRCA1-215ENST00000478531 FAT1Q14517 4588 aa4.48□□□□□ -1.69
BRCA1-215ENST00000478531 IGHV1-58A0A0C4DH39 117 aa4.47□□□□□ -1.69
BRCA1-215ENST00000478531 SCO1O75880 301 aa4.47□□□□□ -1.69
BRCA1-215ENST00000478531 PMCHL1Q16048 86 aa4.47□□□□□ -1.69
BRCA1-215ENST00000478531 SCGB3A1Q96QR1 104 aa4.47□□□□□ -1.69
BRCA1-215ENST00000478531 FAM30AQ9NZY2 134 aa4.47□□□□□ -1.69
BRCA1-215ENST00000478531 GVQW2A0A096LPI5 108 aaPredicted RBP4.47□□□□□ -1.69
BRCA1-215ENST00000478531 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.47□□□□□ -1.69
BRCA1-215ENST00000478531 LINC01546A6NGU7 62 aa4.47□□□□□ -1.69
BRCA1-215ENST00000478531 IGIPA6NJ69 53 aa4.47□□□□□ -1.69
BRCA1-215ENST00000478531 TRGC2P03986 189 aa4.47□□□□□ -1.69
BRCA1-215ENST00000478531 CNBPP62633 177 aaKnown RBP4.47□□□□□ -1.69
BRCA1-215ENST00000478531 LINC00173Q6ZV60 143 aa4.47□□□□□ -1.69
BRCA1-215ENST00000478531 TIMM17AQ99595 171 aa4.47□□□□□ -1.69
BRCA1-215ENST00000478531 ABCA13Q86UQ4 5058 aa4.47□□□□□ -1.69
BRCA1-215ENST00000478531 A0A1B0GV72 72 aa4.46□□□□□ -1.7
BRCA1-215ENST00000478531 SLPIP03973 132 aa4.46□□□□□ -1.7
BRCA1-215ENST00000478531 XGP55808 180 aa4.46□□□□□ -1.7
BRCA1-215ENST00000478531 PAPPA-AS1Q5QFB9 102 aa4.46□□□□□ -1.7
BRCA1-215ENST00000478531 URB1-AS1Q96HZ7 61 aa4.46□□□□□ -1.7
BRCA1-215ENST00000478531 APOMO95445 188 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 NPSP0C0P6 89 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 UBE2D1P51668 147 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 RAB5BP61020 215 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 COX6A2Q02221 97 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 LINC00242Q5T6M2 205 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 C9orf163Q8N9P6 203 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 ORAOV1Q8WV07 137 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 AMELXQ99217 191 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 PCLOQ9Y6V0 5065 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 IGLV4-69A0A075B6H9 119 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 IGHV3-64A0A075B6Q5 118 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 A0A096LNJ9 63 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 IGHV3OR16-9A0A0B4J2B5 98 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 COLCA2A8K830 154 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 HBDP02042 147 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 SMR3BP02814 79 aaPredicted RBP4.45□□□□□ -1.7
BRCA1-215ENST00000478531 SPAG11BQ08648 103 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 C6orf226Q5I0X4 101 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 CARD19Q96LW7 228 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 MAP1LC3CQ9BXW4 147 aa4.45□□□□□ -1.7
BRCA1-215ENST00000478531 LINC01549A6NIU2 74 aa4.44□□□□□ -1.7
BRCA1-215ENST00000478531 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.44□□□□□ -1.7
BRCA1-215ENST00000478531 NDUFA6P56556 154 aa4.44□□□□□ -1.7
BRCA1-215ENST00000478531 Q6ZSA8 131 aa4.44□□□□□ -1.7
BRCA1-215ENST00000478531 SCXQ7RTU7 201 aa4.44□□□□□ -1.7
BRCA1-215ENST00000478531 BAGE3Q86Y29 109 aa4.44□□□□□ -1.7
BRCA1-215ENST00000478531 A0A0J9YXV3 536 aa4.44□□□□□ -1.7
BRCA1-215ENST00000478531 SYCNQ0VAF6 134 aa4.44□□□□□ -1.7
BRCA1-215ENST00000478531 OR10D4PQ8NGN7 298 aa4.44□□□□□ -1.7
BRCA1-215ENST00000478531 CAMK2N2Q96S95 79 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms