RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 C10orf113Q5VZT2 155 aa0.25□□□□□ -2.37
VPS50-212ENST00000476413 LINC00472Q9H8W2 130 aa0.25□□□□□ -2.37
VPS50-212ENST00000476413 IGSF10Q6WRI0 2623 aa0.25□□□□□ -2.37
VPS50-212ENST00000476413 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.25□□□□□ -2.378e-11■■■■□ 22.1
VPS50-212ENST00000476413 PI4KAP42356 2102 aa0.25□□□□□ -2.37
VPS50-212ENST00000476413 SBF2Q86WG5 1849 aa0.24□□□□□ -2.37
VPS50-212ENST00000476413 LRRC37A2A6NM11 1700 aa0.24□□□□□ -2.37
VPS50-212ENST00000476413 WNK1Q9H4A3 2382 aa0.24□□□□□ -2.37
VPS50-212ENST00000476413 PKDREJQ9NTG1 2253 aa0.24□□□□□ -2.37
VPS50-212ENST00000476413 hADV29S1A0JD25 119 aa0.24□□□□□ -2.37
VPS50-212ENST00000476413 ATOX1O00244 68 aa0.24□□□□□ -2.37
VPS50-212ENST00000476413 MPC2O95563 127 aa0.24□□□□□ -2.37
VPS50-212ENST00000476413 UQCRHP07919 91 aa0.24□□□□□ -2.37
VPS50-212ENST00000476413 GNGT1P63211 74 aa0.24□□□□□ -2.37
VPS50-212ENST00000476413 COL5A1-AS1Q5SY13 56 aa0.24□□□□□ -2.37
VPS50-212ENST00000476413 DPY30Q9C005 99 aa0.24□□□□□ -2.37
VPS50-212ENST00000476413 LINC00846Q9NV44 126 aa0.24□□□□□ -2.37
VPS50-212ENST00000476413 ANKRD36A6QL64 1941 aa0.24□□□□□ -2.37
VPS50-212ENST00000476413 DOCK2Q92608 1830 aa0.24□□□□□ -2.37
VPS50-212ENST00000476413 GVINP1Q7Z2Y8 2422 aa0.24□□□□□ -2.37
VPS50-212ENST00000476413 KNL1Q8NG31 2342 aa0.24□□□□□ -2.37
VPS50-212ENST00000476413 GOLGA4Q13439 2230 aaKnown RBP0.23□□□□□ -2.37
VPS50-212ENST00000476413 PZPP20742 1482 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 ANKRD17O75179 2603 aaKnown RBP0.23□□□□□ -2.37
VPS50-212ENST00000476413 CREBBPQ92793 2442 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 DOCK1Q14185 1865 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 C2CD3Q4AC94 2353 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 PATJQ8NI35 1801 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 CSPG4Q6UVK1 2322 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 C7orf77A4D0Y5 90 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 FAM223BA6NKX1 122 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 M0R143 59 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 PSMG4Q5JS54 123 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 ALKAL2Q6UX46 152 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 ZNF720Q7Z2F6 126 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 LINC01600Q96MT4 127 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 SPRR4Q96PI1 79 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 PMCHL2Q9BQD1 86 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 FXYD6Q9H0Q3 95 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 CACFD1Q9UGQ2 172 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 PIEZO2Q9H5I5 2752 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 DNAJC13O75165 2243 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 NCOR2Q9Y618 2525 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 PTPN13Q12923 2485 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 ARHGAP5Q13017 1502 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 NBASA2RRP1 2371 aa0.23□□□□□ -2.37
VPS50-212ENST00000476413 CCDC141Q6ZP82 1450 aa0.22□□□□□ -2.37
VPS50-212ENST00000476413 PDCD11Q14690 1871 aaKnown RBP0.22□□□□□ -2.37
VPS50-212ENST00000476413 NCOA3Q9Y6Q9 1424 aa0.22□□□□□ -2.37
VPS50-212ENST00000476413 PRDM2Q13029 1718 aa0.22□□□□□ -2.37
VPS50-212ENST00000476413 DMBT1Q9UGM3 2413 aaPredicted RBP0.22□□□□□ -2.37
VPS50-212ENST00000476413 UQCRHLA0A096LP55 91 aa0.22□□□□□ -2.37
VPS50-212ENST00000476413 SPRR1AP35321 89 aa0.22□□□□□ -2.37
VPS50-212ENST00000476413 SMIM11AP58511 58 aa0.22□□□□□ -2.37
VPS50-212ENST00000476413 C14orf144Q96I85 54 aa0.22□□□□□ -2.37
VPS50-212ENST00000476413 ZNF292O60281 2723 aa0.22□□□□□ -2.37
VPS50-212ENST00000476413 APC2O95996 2303 aa0.22□□□□□ -2.37
VPS50-212ENST00000476413 NRKQ7Z2Y5 1582 aa0.22□□□□□ -2.37
VPS50-212ENST00000476413 WNK2Q9Y3S1 2297 aa0.22□□□□□ -2.37
VPS50-212ENST00000476413 MYH4Q9Y623 1939 aa0.22□□□□□ -2.37
VPS50-212ENST00000476413 SETBP1Q9Y6X0 1596 aa0.22□□□□□ -2.37
VPS50-212ENST00000476413 CEP290O15078 2479 aa0.22□□□□□ -2.37
VPS50-212ENST00000476413 COL14A1Q05707 1796 aaKnown RBP0.22□□□□□ -2.37
VPS50-212ENST00000476413 CNOT1A5YKK6 2376 aaKnown RBP0.21□□□□□ -2.38
VPS50-212ENST00000476413 NALCNQ8IZF0 1738 aa0.21□□□□□ -2.38
VPS50-212ENST00000476413 ACACAQ13085 2346 aa0.21□□□□□ -2.38
VPS50-212ENST00000476413 NHSL1Q5SYE7 1610 aa0.21□□□□□ -2.38
VPS50-212ENST00000476413 RIF1Q5UIP0 2472 aaKnown RBP0.21□□□□□ -2.38
VPS50-212ENST00000476413 SPG11Q96JI7 2443 aa0.21□□□□□ -2.38
VPS50-212ENST00000476413 TRBV25-1A0A075B6N4 114 aa0.21□□□□□ -2.38
VPS50-212ENST00000476413 A0A0G2JND7 137 aa0.21□□□□□ -2.38
VPS50-212ENST00000476413 LOC730098B7Z3J9 87 aa0.21□□□□□ -2.38
VPS50-212ENST00000476413 S100A8P05109 93 aa0.21□□□□□ -2.38
VPS50-212ENST00000476413 FAUP35544 74 aaKnown RBP0.21□□□□□ -2.38
VPS50-212ENST00000476413 HMGN3Q15651 99 aa0.21□□□□□ -2.38
VPS50-212ENST00000476413 TRGV9Q99603 122 aa0.21□□□□□ -2.38
VPS50-212ENST00000476413 CRIPTQ9P021 101 aa0.21□□□□□ -2.38
VPS50-212ENST00000476413 PDE4DIPQ5VU43 2346 aa0.21□□□□□ -2.38
VPS50-212ENST00000476413 EPG5Q9HCE0 2579 aa0.21□□□□□ -2.38
VPS50-212ENST00000476413 USF3Q68DE3 2245 aa0.21□□□□□ -2.38
VPS50-212ENST00000476413 PKD1L2Q7Z442 2459 aa0.21□□□□□ -2.38
VPS50-212ENST00000476413 LRP6O75581 1613 aa0.2□□□□□ -2.38
VPS50-212ENST00000476413 FLNAP21333 2647 aaKnown RBP0.2□□□□□ -2.38
VPS50-212ENST00000476413 TSC2P49815 1807 aa0.2□□□□□ -2.38
VPS50-212ENST00000476413 KIF20BQ96Q89 1820 aa0.2□□□□□ -2.38
VPS50-212ENST00000476413 RGPD2P0DJD1 1756 aa0.2□□□□□ -2.38
VPS50-212ENST00000476413 A0A1B0GU69 56 aa0.2□□□□□ -2.38
VPS50-212ENST00000476413 I3L2K1 104 aa0.2□□□□□ -2.38
VPS50-212ENST00000476413 SERP2Q8N6R1 65 aa0.2□□□□□ -2.38
VPS50-212ENST00000476413 Q9H521 79 aa0.2□□□□□ -2.38
VPS50-212ENST00000476413 ACANP16112 2415 aa0.2□□□□□ -2.38
VPS50-212ENST00000476413 SETD2Q9BYW2 2564 aaPredicted RBP0.2□□□□□ -2.38
VPS50-212ENST00000476413 CACNA1AO00555 2505 aa0.2□□□□□ -2.38
VPS50-212ENST00000476413 LRRK2Q5S007 2527 aa0.2□□□□□ -2.38
VPS50-212ENST00000476413 RAPGEF6Q8TEU7 1601 aa0.2□□□□□ -2.38
VPS50-212ENST00000476413 PLXNB2O15031 1838 aa0.2□□□□□ -2.38
VPS50-212ENST00000476413 WNK3Q9BYP7 1800 aa0.2□□□□□ -2.38
VPS50-212ENST00000476413 EHBP1L1Q8N3D4 1523 aa0.19□□□□□ -2.38
VPS50-212ENST00000476413 PCNX1Q96RV3 2341 aa0.19□□□□□ -2.38
VPS50-212ENST00000476413 CCDC168Q8NDH2 2452 aa0.19□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms